BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478211
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09030.1 | Symbols: | BTB/POZ domain-containing protein | c... 2259 0.0
> AT3G09030.1 | Symbols: | BTB/POZ domain-containing protein |
chr3:2754782-2756507 FORWARD LENGTH=1726
Length=1726
Score = 2259 bits (1223), Expect = 0.0
Identities = 1487/1611 (92%), Gaps = 31/1611 (2%)
Strand=Plus/Plus
Query 1 CGGTTCAAGCTGAAATCGAAACTCGAACCGGACTGTGATGGTGGTTTCCGATGGCGGCGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 23 CGGTTCAAGCTGAAATCGAAACTCGAACCGGACTGTGATGGTGGTTTCCGATGGCGGCAA 82
Query 61 GCGAGTGAAGCTCAACGTTGGCGGCGAAATCTTCGAAACCAACGCGTCAACAATTCAGTC 120
||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||
Sbjct 83 ACGAGTGAAGCTCAACGTCGGCGGCGAGATCTTCGAAACCAACGCGTCGACCATTCAATC 142
Query 121 ATCTTGCCCAGACTCTCTTCTTGCGGCTCTATCGACTCCAACCTCCCATGGCTCAAATCC 180
|||||||||||||||||| || || |||||||||||| ||||||||||||| || |||||
Sbjct 143 ATCTTGCCCAGACTCTCTCCTCGCAGCTCTATCGACTTCAACCTCCCATGGATCGAATCC 202
Query 181 GGTTTTCATCGATCGTGACCCGGAAATTTTCGCCGTCATTCTCAATCTCCTCCGTACTGG 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 203 GGTTTTCATCGATCGTGACCCGGAGATTTTCGCCGTCATTCTCAATCTCCTCCGTACTGG 262
Query 241 TCGACTTCCAGCTAATTCCTCCGGCGTTTTCTCCAAGCAAGAGCTACTCGATGAGGCTAT 300
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 263 TCGACTCCCAGCTAATTCCTCCGGCGTTTTTTCCAAGCAAGAGCTACTAGATGAGGCTAT 322
Query 301 GTATTACGGCGTCGAATCACTCCTCAGATTGGCGATGTTACCGCCGCCGCTGCTAGGTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GTATTACGGCGTCGAATCACTCCTCAGATTGGCGATGTTACCGCCGCCGCTGCTAGGTTT 382
Query 361 CGATGCGTCTCTAGTCTCCACAATCGTACCGGCTGCTGATGGAGTTCCGTCTGCTTTAAC 420
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 383 CGATGCGTCTCTTGTCTCCACAATCGTACCGGCTGCTGATGGAGTCCCGTCTGCTTTAAC 442
Query 421 CGCCACCGCTGGAGACGCTTCTCTGTGGATCGCTCACGGCGGTCAGATCTCCGTTTACGA 480
||| || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 443 CGCTACTGCTGGAGACGCCTCTCTGTGGATCGCTCACGGTGGTCAGATCTCCGTCTACGA 502
Query 481 TTGGAGTCTTTCTCATGCTGGAACCGTCCGTACGCATCTCAATGATATCACATCGATCTG 540
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 503 TTGGAGTCTTTCCCATGCTGGAACCGTCCGTACACATCTCAACGATATCACATCGATCTG 562
Query 541 CCGTGTGTGGAGTGAAGCGGCTGCAATCGGATCTGGATCCGCGTCGGGGCTTCACTTCTA 600
|||||| ||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 563 CCGTGTCTGGGGCGAAGCTGCTGCAATTGGATCTGGATCCGCGTCGGGACTTCATTTCTA 622
Query 601 CGATCTGTCTGGAGGTCGATACGTCGGATCTACGCATTGGACTGATCCGGAGGATCCGAG 660
|||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||
Sbjct 623 CGATCTCTCTGGAGGTCGATACATCGGATCTACGCACTGGACGGATCCGGAAGATCCGAG 682
Query 661 GATCCATAAGGCACGCGTGGCTGC-GATTGCTGATTCGGACGGTGGAGTTTTCGCATCCT 719
|||||||||||||||||| || || | ||||||||||||| |||||||| ||||||||||
Sbjct 683 GATCCATAAGGCACGCGTCGCCGCCG-TTGCTGATTCGGAAGGTGGAGTATTCGCATCCT 741
Query 720 TTGATTGCCTGCATAGAGAGAACAGTGTTCTCCAGATCGACAAATCCACGCTCCAAGTAG 779
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 742 TTGATTGCCTGCACAGAGAGAACAGTGTTCTCCAGATCGACAAATCCACTCTTCAAGTCG 801
Query 780 CCGCCGTGATTGGCCAGCAATCTGGAAACTCGGCTAAAACCACAGTACCGGAGAAACTCC 839
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CCGCCGTGATCGGTCAGCAATCTGGAAACTCGGCTAAAACCACAGTACCGGAGAAACTCC 861
Query 840 GGTGGCTGCCAACGAACGGTCTTTTGGTCGGATCAGCCGTTCAACGCGGAGTGTTTGGTT 899
||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 862 GGTGGCTGCCAGCGAAAGGTCTTTTGGTGGGATCAGCCGTTCAACGTGGAGTGTTTGGTT 921
Query 900 GCTCTGGCTACATCCGGATTTGGGACCCAAGGTCCAGGAACATCGTATGGGAAACGAGTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 GCTCTGGCTACATCCGGATTTGGGACCCAAGGTCCAGGAACATCGTATGGGAAACGAACG 981
Query 960 AGCCAGGATCGGGACGAAGCACTAGGTTTGGAGACGCCTTAGCTGATATGGACGTGGATG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 982 AGCCAGGATCGGGACGAAGCACTAGGTTTGGAGACGCCTTAGCTGATATGGACGTGGACG 1041
Query 1020 TTGAAGACTCGATCCTCTTCAAGGTATGTTCCAAGTCAGGAGACCTTGGAATGGCTGACA 1079
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1042 TTGAAGACTCGATCCTTTTCAAGGTATGTTCCAAGTCAGGAGACCTCGGAATGGCAGACA 1101
Query 1080 TCCGTAAATTAGGTGATGATCCATGGGTATATATGTCAGACGAGAATCCCGGGGCGTGGA 1139
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1102 TTCGTAAATTAGGTGAAGATCCATGGGTATATATGTCAGACGAGAATCCCGGTGCCTGGA 1161
Query 1140 AGGCCGGTGACGGAGGCGGTTACAGCGTTGTACATTGTTACAGAAAGCAAGTGTTGGCGG 1199
| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1162 AAGCCGGCGACGGAGGTGGTTACAGCGTGGTACATTGTTACAGAAAGCAAGTGTTGGCCG 1221
Query 1200 CGAGAGGTGGTGCATTAGAGGTATGGTCAAGTGTTAAGGGGAAGACAAGTGGTGATCCGA 1259
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1222 CCAGAGGTGGTGCATTAGAGGTATGGTCAAGTGTTAAGGAGAAGACAAGTGGTGATCCAA 1281
Query 1260 TTCGCAGAAGAAACTTTGTAGACAAGGAAGATGATTCCAAGAGAGGGATGATTTCGAAAA 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TTCGCAGGAGAAACTTTGTAGACAAGGAAGATGATTCCAAGAGAGGGATGATTTCGAAAA 1341
Query 1320 TTGAAGCCGGAGGTGACCGGCTCTTTGTTTCTCGGGAATTTATGGAAGGTGTTGAAGTCT 1379
||||||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 1342 TTGAAGCAGGAGGTGACCGGCTCTTTGTTTCTCGGGAATGTATGGAAGGTGTGGAGGTCT 1401
Query 1380 GGGAAACTTCTAATTTCTCAGGTGTGATATCGGTTGAGTAATAATAGTTTCCAGAAGAAC 1439
|||||||||||| |||||| |||||| |||| || ||||||| |||||| |||||||
Sbjct 1402 GGGAAACTTCTAGTTTCTCCGGTGTGGTATCCGTCGAGTAATG---GTTTCCCGAAGAAC 1458
Query 1440 GGTGA-C---CACCCTCTGTTTTCCCGGGAAAATCTTGATAGTTTC--AG-A---T---- 1485
||||| | |||||||||||||||||||||||||||| || |||| || | |
Sbjct 1459 GGTGATCGATCACCCTCTGTTTTCCCGGGAAAATCTTGTTAATTTCGCAGGAAAGTAACA 1518
Query 1486 --T-TTCAAACTTTCCAGGGTCTAGTAGA---CTAGTGGTACTGATTGTCTGC-AGA-AT 1537
| ||||||||||||||||||||||||| ||||| ||||||||||||| | | |
Sbjct 1519 AATCTTCAAACTTTCCAGGGTCTAGTAGAAGACTAGTAGTACTGATTGTCT-CTACCCAG 1577
Query 1538 GAAGAACAGCT-GAACAGAATGAAGAACATCATCAAGATTCAAACTTTACC 1587
| | || || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 GTCCA-CA-CTTGAACAGAATGAAGAACATCATCAAGATTCACACTTTACC 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5