BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478212

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09032.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   785    0.0  


> AT3G09032.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G01225.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr3:2757435-2758097 REVERSE LENGTH=663
Length=663

 Score =  785 bits (425),  Expect = 0.0
 Identities = 539/588 (92%), Gaps = 31/588 (5%)
 Strand=Plus/Plus

Query  1    CTCTTCACCGCAATTTCAG---AC-AAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG  56
            |||||||||||||||||||   || |||||||||||||||||||||||||||||||||||
Sbjct  22   CTCTTCACCGCAATTTCAGACAACAAAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG  81

Query  57   CTTTAATCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACATGACGGTTTAAG  116
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  82   CTTTAACCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACACGACGGTTTAAG  141

Query  117  CTCATCACATCACAGCCGGAGAAGGGTGGTTCTCTTCGGAATTCTCAGTTTTGGTCTAAG  176
            ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  142  CTCGTCACATCACAGCCGGAGAAGGGTGGTTCTCGTCGGAATTCTCAGTTTTGGTCTAAG  201

Query  177  GAGCTCGCCGGCCGCCAGGAAATTGATCCACCGTATTGGAGCTAGAGTCGCCAAAACGCT  236
            ||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct  202  GAGCTCGCCGGCCGCGAGGAAATTGATCCAACGTATTGGAGCAAGATTCGCCAAAACGCT  261

Query  237  GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAA-AAA--CGTCATCGTTTTTGTT  293
            |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||
Sbjct  262  GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAAGAAAAACGTCATCGTTTTTGTT  321

Query  294  GCCTTCGTCATCGTCTTCTTCCTCTTCG--A-CTATTTATATGAAGAGGTCAAAGTCAGT  350
            ||||||||| ||||| ||||| ||||||  | ||||||||||||||||||||||||| ||
Sbjct  322  GCCTTCGTCGTCGTCGTCTTCTTCTTCGTCAGCTATTTATATGAAGAGGTCAAAGTCTGT  381

Query  351  AAACGAGACAGAGTCTCACCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC  410
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  382  AAACGAGACAGAGTCTCATCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC  441

Query  411  TTCTTTTTCTCTTTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTT---GATTTGACCC  467
            ||||||| |||| ||||||||||||||||||||||||||||||||||   ||||| ||||
Sbjct  442  TTCTTTTCCTCTGTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTTCTTGATTTTACCC  501

Query  468  GGTTTGGATTTGCGTCCGGTCAAACAGAG--CTCTTACTTTCTCt-ttttttttttCTTT  524
            |||||||||||||||||||||||||||||  ||| || || |||| ||||||||||||  
Sbjct  502  GGTTTGGATTTGCGTCCGGTCAAACAGAGAGCTCCTA-TT-CTCTGTTTTTTTTTTCT--  557

Query  525  TGTTGTTATGTTAGAGAATTGAGCATTGTATAGGAGTGTTTTAAATTT  572
             ||    ||||||||||||||    |   |||||||||||||||||||
Sbjct  558  -GTA---ATGTTAGAGAATTG----T---ATAGGAGTGTTTTAAATTT  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5