BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478213
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09035.1 | Symbols: | Concanavalin A-like lectin family pro... 2161 0.0
AT3G09190.1 | Symbols: | Concanavalin A-like lectin family pro... 976 0.0
> AT3G09035.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:2758820-2760347 FORWARD LENGTH=1528
Length=1528
Score = 2161 bits (1170), Expect = 0.0
Identities = 1407/1519 (93%), Gaps = 25/1519 (2%)
Strand=Plus/Plus
Query 1 AGTGTATCTGTGAGAGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATATTTACTACT 60
||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 20 AGTGTGTCTGTGAGGGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATA-TT--TACT 76
Query 61 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACA--CAACTTACT 118
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 77 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACACTCCACTTACT 136
Query 119 ---AAAAA-CATTATTTCTTCTTGAAATA-TGGATTTCATTCTCGAATCCTAGAGAATTC 173
||||| |||||||||||||| || | |||| ||| |||||||||| |||| |||||
Sbjct 137 AAAAAAAATAATTATTTCTTCTTG-AAGAGTGGAATTCTTTCTCGAATCTTAGAAAATTC 195
Query 174 CATTTAGAACTAAAGAAGAGAGATAGATCCAGTTTCTCGTCCCATTTAAGCTATGGCCAT 233
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 196 CATTTAGAACTAAAGAAGAGAGAGAGATCCAGTTTCTCGTCCCAGTTAAGCTATGGCCAT 255
Query 234 GTTCAAAACCTTATCTTTTTTGTTCCTCTTATGCTTTCAGATACATGGAACGATGTCTGC 293
||||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||
Sbjct 256 GTTCAAAACCTTATCTTTTTTGTTCCTTTTGTGCTTTCAGATACATGGAACGGTGGCTGC 315
Query 294 AGCTGAAAATTCCTCGTTTTCATTCAATGGGTTTGCT-ATATCTCCCAGTTTTGACAAGA 352
|| ||||||||||| ||||||||||||||| |||| | | |||||| || ||||||||||
Sbjct 316 AGATGAAAATTCCTTGTTTTCATTCAATGGTTTTG-TAAAATCTCCGAGCTTTGACAAGA 374
Query 353 GTGTTGCTCTGTTTGGGGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 412
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 434
Query 413 ACTCAGTGACTCGAAGCGTTGGACGAGTCGTTTACAAGAAACCCATCAATCTTTTCCAAG 472
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 435 ACTCAGTGACTCGAAGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAATCTTTTCAAAG 494
Query 473 GTAAACAGAGGAATTCGAGATCTTTCTCGACTCACTTCTCGTTTTCTTCCATGTCCAGTG 532
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 495 GTAAACAGAGGAATTCGAGATCTTTCTCTACTCACTTCTCGTTTTCTTCCATGTCCAACG 554
Query 533 AGATTAGTGATGGTGCCTTGGCTTTTGTAATGGTTCCAACTAGTTTGGATCTTAGTCTGT 592
||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 555 AGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGGATCTTAGTCTGT 614
Query 593 TTGGTAACAAGGACAACAGTTCCTCTGCTTTAGGGTTCCTATCACAATATGCAAAGAACG 652
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 615 TTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATCACAATATGCAAAGAACG 674
Query 653 AGACAGTTTTTGCTGTTGAGTTTGATATCTCCAAGAGAGGAAACTGTGCAAGAATCTTAA 712
|||||||| ||||||| ||||||| |||||||| || ||||||| |||||||||| |||
Sbjct 675 AGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGTGCAAGAATTTTAG 734
Query 713 TTGGTAGACCTGAATCTGCCCAAATTAGAAACCTTTCCTTTGTGGGTGACTTGATGATGG 772
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 735 TTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGTGACTTGATGATGG 794
Query 773 ACAATGGAGGGACTTTGAACTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 832
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 854
Query 833 TTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTGGATCCATTCTTCTCTTTCTCAGTAG 892
|||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| ||||
Sbjct 855 TTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTCTCTTTCTCGGTAG 914
Query 893 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 974
Query 953 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGCTTTGAAATAAGGCATCCTCCTC 1012
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 975 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAATAAGACATCCTCCTC 1034
Query 1013 CGATGTGGATGCATTCAGAGCCGCTTGAACCGAATGAAGTCTCAAAGGAGGAAGA---TG 1069
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||
Sbjct 1035 CGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAGTTTCAAAGGAGGAGGAAAATG 1094
Query 1070 GTCGAGGTACAAGTGAGTGTATATGGAAGATGCTTGGTGCTTTGGTTTTTGGTGCAGCTT 1129
||||||| | ||||||||||| |||| ||||||||||||||| | |||||||||||||
Sbjct 1095 GTCGAGGGAGAAGTGAGTGTACGCGGAAAATGCTTGGTGCTTTGATCTTTGGTGCAGCTT 1154
Query 1130 GTGGAGCCTTAGGGACAATGCTTGCTTTGTATATCTGGACGATATGCCGTGTTAGGCGGT 1189
|||||||||||||| || |||| | ||||||| |||||||||||||||||||||||||||
Sbjct 1155 GTGGAGCCTTAGGGGCACTGCTGGGTTTGTATCTCTGGACGATATGCCGTGTTAGGCGGT 1214
Query 1190 CAATGGCCGTGGTTCCTGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTAAGTA 1249
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1215 CAATGGCCGTGGTTCCAGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTA-GT- 1272
Query 1250 GTTTGGTTTTGTT-TTGAAAAGTTGTCCTGCGTTGTGGTGTAAATTTAGGAActt-cttc 1307
|| ||||||| | ||||||||||||| || |||||||||||||||||||||||| || |
Sbjct 1273 -TT-GGTTTTGGTGTTGAAAAGTTGTCTTGTGTTGTGGTGTAAATTTAGGAACTTTCT-C 1329
Query 1308 ttcttcttcttcCCTCTTGTTTTACCTGATCGTTCTTTAGTTATTCTTATGTTTGTGTAC 1367
|||||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||
Sbjct 1330 TTCTTCTTCTTCCCTCTTGTTT-ACTTGATCGTTCTTTAGTGATTCTTATGTCTGTTTAC 1388
Query 1368 TTAGTTGCAGGTTTTGTGGTATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1427
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TTAGTTGCAGGTTTTGTGAAATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1448
Query 1428 AAGCTTATTGGTATGTTGCCAAATTAACTTAGTTGTTGATGTTGTTCTTGATCCATTTGG 1487
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1449 AAGCTTATTGATATGTTGC-AAATTAACTTAGTTGTTCATGTTGTTCTTGATCCATTTGG 1507
Query 1488 ATGATGAGTTGTGCATTTA 1506
|| ||||| ||||||||||
Sbjct 1508 ATTATGAGCTGTGCATTTA 1526
> AT3G09190.1 | Symbols: | Concanavalin A-like lectin family protein
| chr3:2821479-2822687 REVERSE LENGTH=1209
Length=1209
Score = 976 bits (528), Expect = 0.0
Identities = 865/1020 (85%), Gaps = 53/1020 (5%)
Strand=Plus/Plus
Query 226 ATGGCCATGTTCAAAACCTTATCTTTTTTGTTCCTCTTATGCTTTCAGATACATGGAACG 285
||||| || ||||||||| |||||||| || |||| ||||||||| |||||||||||||
Sbjct 1 ATGGCGATATTCAAAACCCTATCTTTTCTGGTCCTTTTATGCTTTGAGATACATGGAAC- 59
Query 286 ATGTCTGCAGCTGAAAATTCCTCGTTTTCATTCAATGGGTTTGCT-ATATCTCCCAGTTT 344
| |||| || ||| | |||||||||| ||| || | | | ||||| |||||
Sbjct 60 ----C-GCAGGTGTGGATTTCACGTTTTCATTTGATGAATTCG-TAAAATCTCAGAGTTT 113
Query 345 TGACAAGAGTGTTGCTCTGTTTGGGGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCA 404
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 114 TGACAAGAGTGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTCGATTCA 173
Query 405 GCTGACTGACTCAGTGACTCGAAGCGTTGGACGAGTCGTTTACAAGAAACCCATCAATCT 464
||||||||||||||||| ||| | || ||||||||| ||||||||||||||||||||||
Sbjct 174 GCTGACTGACTCAGTGAATCGGACCGAGGGACGAGTCTTTTACAAGAAACCCATCAATCT 233
Query 465 TTTCCAAGGTAAACAGAGGAA-TTCGAGATCTTTCTCGACTCACTTCTCGTTTTCTTCCA 523
|||||||||||| ||||||| | || || |||||||||| |||||||| || ||| |
Sbjct 234 ATTCCAAGGTAAAGAGAGGAACTCCGTTAT-TTTCTCGACTTACTTCTCG--TT-TTCGA 289
Query 524 TGTCCAGTGAGATTAGTGATGGTGCCTTGGCTTTTGTAATGGTTCCAACTAGTTTGGATC 583
|| ||| ||||||| ||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 290 TGCCCAATGAGATTGGTGAT-GT--CTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATC 346
Query 584 TTAGTCTGTTTGGTAACAAGGACAACAGTTCCTCTGCTTTAGGGTTCCTATCACAATATG 643
|||||||||||||||| || || |||||||||||||||||||||| |||| | | ||||
Sbjct 347 TTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTAGGGTTTCTATTAGAGTATG 406
Query 644 CAAAGAACGAGACAGTTTTTGCTGTTGAGTTTGATATCTCCAAGAGAGGAAACTGTGCAA 703
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 407 CAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAA 466
Query 704 GAATCTTAATTGGTAGACCTGAATCTGCCCAAATTAGAAACCTTTCCTTTGTGGGTGACT 763
|| ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 467 GAGTCTTAATTGGTAGACCTGAGTCTGCCAAAATTAGAAACCTTTCGTTTGTGGGTGACT 526
Query 764 TGATGATGGACAATGGAGGGACTTTGAACTGTATGATTGAGTATGAGGCAAGTTCTAAGA 823
|||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 527 TGATGATGGATGATGGAGGGATTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGA 586
Query 824 GAATGATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTGGATCCATTCTTCTCTT 883
|||||| |||||| |||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 587 GAATGAGGGTTCGTTTCAGAAAACGTGGTTCGATAAAGATGTTTGATCCGTTCTTCTCTT 646
Query 884 TCTCAGTAGACTTGGCCAAG-TTATGGAAAGGTGGTGAAGTCACT-GTGGGTTTAAGCTC 941
|||| |||||||||| ||| || ||||||||||||||||||| | ||||||||||||||
Sbjct 647 TCTCGGTAGACTTGGAGAAGCTT-TGGAAAGGTGGTGAAGTCA-TGGTGGGTTTAAGCTC 704
Query 942 TGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGCTTTGAAATAAG 1001
||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 705 TGCTAATGGGAA--C-TCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATATG 761
Query 1002 GCATCCTCCTCCGATGTGGATGCATTCAGAGCCGCTT-GAACCGAATGAAG-TCTCAA-- 1057
||||| | |||||| ||| |||| ||| ||| || | ||| ||||||| | | ||
Sbjct 762 GCATCTTGATCCGATATGGGTGCAACCAGCGCCA-TTAGGACCAAATGAAGGTTTGAAGC 820
Query 1058 ---A-G-------G-A---GGAAGATGGTCGAGGTACA-AGTGAGTGTATATGGAAGA-T 1100
| | | | |||||| || |||| | | |||||||||||||||| || |
Sbjct 821 CGGACGTTTCCACGGAAATGGAAGAGGGCCGAGAAA-ATAGTGAGTGTATATGGA-GAAT 878
Query 1101 GCTTGGTGCTTTGGTTTTTGG-TGCAGCT-TGTGGAGCCTTAGGGACAATG-CTTGCTTT 1157
|||||||||| |||| || || ||||| | ||||||||| ||||| ||||| | ||| |
Sbjct 879 GCTTGGTGCTCTGGTCTT-GGCTGCAG-TATGTGGAGCCGTAGGGGCAATGTCA-GCTAT 935
Query 1158 GTATATCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCTGAGGAATGTGC 1217
|||| | ||||| || ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 936 GTATCTTTGGACTATTTGCAGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5