BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478215
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1476 0.0
> AT3G09050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; Has 120 Blast hits to 120 proteins in 47 species:
Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants
- 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
| chr3:2764651-2766144 FORWARD LENGTH=1223
Length=1223
Score = 1476 bits (799), Expect = 0.0
Identities = 980/1061 (92%), Gaps = 37/1061 (3%)
Strand=Plus/Plus
Query 1 ATCAATAATAATCTCTCAAATATAGGGTCTCTTATGCAAACACTTTAAAACTCAAAACTT 60
||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 59 ATCTATAATAATGTCTCAAATATAGGGTCTTTTATGCAAATACTTTAAAACTCAAAACTG 118
Query 61 GTTTTGGATAATGCGTAAACTAAATTAAAGAACGAGA----GGTTACTGTGAAACGAGCC 116
||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 119 GTTTTGGATAATGCGTAAACTAAATTAAAAAACGAGAGGTGGGTTACTCTGAAACGAGCC 178
Query 117 -TC-TC-TCTTC-TT--------C----AAGATGGTGAACACGCTTCATGCATTTCAGAC 160
|| || ||||| || | |||||| ||||||| |||||||||||||||||
Sbjct 179 TTCTTCTTCTTCGTTGAAGAAAACATAGAAGATGATGAACACACTTCATGCATTTCAGAC 238
Query 161 AACCTTAACACCAAACTTCCATGTTCTTTTCAATGCCTCGAGACA-TCCCATCTCCAGAA 219
|||||||||||||||||| |||||||||||||||||||||||||| || | | ||| ||
Sbjct 239 AACCTTAACACCAAACTTTCATGTTCTTTTCAATGCCTCGAGACATTCTC-TTTCCCGAC 297
Query 220 CCCAATTTCTCTGTCTCTCCAAATCGGGAGACGGAACTTCAGATTCTGATTCTGATCCCG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCCAATTTCTCTGTCTCTCCAAATCGGGAGACGGAACTTCAGATTCTGATTCTGATCCCG 357
Query 280 ACCCTCCAAAACCCGAAGGCGATACTCGGAGACAAGAACTCTTAGCCAGGATCGCCATGA 339
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 358 ACCCTCCAAAACCCGAAGGCGATACTCGCAGGCAAGAACTCTTAGCTAGGATCGCCATGA 417
Query 340 TTCAGACTTCGAAGGTCCGTTTAACGGATTTCTTGGACGAGCGATCAGAGTATCTCACCA 399
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 418 TTCAGACATCGAAGGTCCGTTTGACGGATTTCTTGGACGAGAGATCAGAGTATCTCACCA 477
Query 400 AGTTTGCTGAAGAAGCCAATGCGGAGTTTGACAAGGTTGGAGAAGACGCCATGAAAGACC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTTTGCTGAAGAAGCCAATGCGGAGTTTGACAAGGTTGGAGAAGACGCCATGAAAGACC 537
Query 460 TTGACGAAGCTAGCACAAGGATACTGGAGAATATCGAAAGCAAGATGCAAGCTTTTGAGG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGACGAAGCTAGCACAAGGATACTGGAGAATATCGAAAGCAAGATGCAAGCTTTTGAGG 597
Query 520 AATCTGCGGGATTGAACAGATTAGAGATAGAGGAGAACGATAATAAGTTGGCTGAGTTTG 579
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 AATCTGCGGGATTGAACAGATTAGAGATCGAGGAGAACGATAATAAGTTGGCTGAGTTTG 657
Query 580 AGGAGAAGATCCAAGTAGACAGGAATGAAGGATTGTTCTTTAAAAGCTTGCGTGACAAAA 639
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 AGGAGAAGATTCAAGTAGACAGGAATGAAGGATTGTTCTTTAAAAGCTTACGTGACAAAA 717
Query 640 AACCGGTGGATAGAGAGCAAGCTAAACAGGAAGCTGATAAAATACAAGAGGTTACCAAAG 699
|||| ||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||
Sbjct 718 AACCAGTGGATAGAGAGCAAGCTAGAGAGGAAACTGAGAAAATACAAGAGGTTACCAAAG 777
Query 700 AAAGTGTGGGATCAAAGTCAAGAAGGAATATTTACCTCGGGTTGATTGGGATCGTGGTTC 759
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 778 AAAGTGCAGGATCAAAGTCAAGAAGGAATATTTACCTCGGGTTAATTGGGATTGTGGTTC 837
Query 760 TCGCAATTGCTGATTCCTTTGTTTCTTCACCGGATTGGAGAAAAGTCGCAATTCTTGGAG 819
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCGCAATTGCTGATTCCTTCGTTTCTTCACCGGATTGGAGAAAAGTCGCAATTCTTGGAG 897
Query 820 CTATTCTTGTCCCACTGCTCACTCAATTCGTCTACGAGCAGACATTATTATCAGAAGAAG 879
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 898 CTATCCTTGTCCCACTGCTCACTCAATTCGTATACGAGCAGACATTATTATCAGAAG--- 954
Query 880 CAGATAAGGGAAAGGGAGACAAGAAGGAATGAACGA--GA-G---AC----T--GTATCA 927
||||||||||||||| | |||||||||||||||||| || | || | |||| |
Sbjct 955 CAGATAAGGGAAAGGAAAACAAGAAGGAATGAACGATAGAAGCCGACAAACTCTGTATTA 1014
Query 928 ATCGAAAGGGATAAATATAACTTGATCGCATAGACCCAAAGTGTGAAACTTATCACTTTT 987
|||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1015 ATCGAAAGAGATGAATATAACTTGATGGCATAGACCCAAAGTGTGAAACTTATCACTTTA 1074
Query 988 GGTTAGATGCGTCAAGCTACAGTTTTTCTTTTGCATCATCA 1028
|||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1075 GGTTTGATGCGTCAAGCTACAGCTTTTCTTTTGCATCATCA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5