BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478217
Length=3230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09070.1 | Symbols: | Protein of unknown function (DUF740) ... 2364 0.0
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1212 0.0
AT5G01170.1 | Symbols: | Protein of unknown function (DUF740) ... 122 2e-26
> AT3G09070.1 | Symbols: | Protein of unknown function (DUF740)
| chr3:2768688-2771174 REVERSE LENGTH=2487
Length=2487
Score = 2364 bits (1280), Expect = 0.0
Identities = 1563/1692 (92%), Gaps = 49/1692 (3%)
Strand=Plus/Plus
Query 1569 AAGAGGAGGAAGA-G-A-ACTACGTTGAAGCTGGCGACTTTGAGATTCTCAATGATTCCG 1625
|||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAGGAGGAGGAGGAAGACTACGTTGAAGCTGGCGACTTTGAGATTCTCAATGATTCCG 874
Query 1626 GCGAACTAATTG-GGGAAAAACGCGACGAGATTGTTGAAGTTAGAGAGGAGATTGAAGAA 1684
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 875 GCGAACTAA-TGAGGGAAAAAAGCGACGAGATTGTTGAAGTTAGAGAGGAGATTGAAGAA 933
Query 1685 GCGGAGAAACCAGA-AAAGGGTTTAAGCGAAGAGGAGTTGAAGCCAATTAAGGATTACAT 1743
|||| ||||||| | |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 934 GCGGTGAAACCA-ACAAAGGGTTTAAGCGAAGAGGAGTTAAAGCCAATAAAGGATTACAT 992
Query 1744 AGATCTTGATACTCAAACCAAGAAGCCATCGGTGCGACGGAGTTTTTGGTCGGCGGCCTC 1803
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 993 AGATCTTGATTCTCAAACCAAGAAGCCATCGGTACGACGGAGTTTTTGGTCGGCGGCCTC 1052
Query 1804 TGTTTTCAGCAAGAAGCTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGGAA 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1053 TGTTTTCAGCAAGAAGCTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGTAA 1112
Query 1864 CGGCGGCGACCATCGGCCGGGATCAGCTAGATTACCGGTGGA-AAAGCCGATTGGGAGAC 1922
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1113 CGGCGGCGACCATCGGCCAGGATCAGCTAGATTACCGGTGGAGAAA-CCGATTGGGAGAC 1171
Query 1923 AGCTCCGAGATACTCAATCGGAGATTGCTGATTACGGAT-TCGGTCGGAGGTCGTGCGAT 1981
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1172 AGCTCCGGGATACTCAATCGGAGATTGCTGATTACGGATAT-GGTCGGAGGTCGTGCGAT 1230
Query 1982 ACTGACCCTCGATTCTCTCTCGACGCCGGAAGATTCTCTCTTGACGCCGGAAGATTCTCC 2041
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1231 ACCGACCCTCGATTCTCTCTAGACGCCGGAAGATTCTCTCTTGACGCCGGTAGATTCTCC 1290
Query 2042 GTTGATATCGGTAGGATCTCGCTTGATGACCCTCGTTACTCGTTTGACGAGCCGAGAGCT 2101
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1291 GTTGACATCGGTAGGATCTCGCTTGATGATCCTCGTTATTCGTTTGACGAGCCGAGAGCT 1350
Query 2102 TCTTGGGACGGATCTTTGATCGGACGGACAGCT-TTTCCACCTGCCGTGAGAGCTCCTCC 2160
||||||||||| |||||||| ||||||||| | ||||| || |||| ||||||||||||
Sbjct 1351 TCTTGGGACGGGTCTTTGATTGGACGGACA-ATGTTTCCTCCCGCCGCGAGAGCTCCTCC 1409
Query 2161 GCCGCCGTCAATGCTTTCTGTGGTGGAGGATGCGCCGCCGCCGGTGCACCGTCACGTAAC 2220
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GCCGCCGTCAATGCTCTCGGTGGTGGAGGATGCGCCGCCGCCGGTGCACCGTCACGTAAC 1469
Query 2221 CCGAGCGGATATGCAGTTTCCGGTGGAAGAACCGGCGCCGCCACCACCGGTGGTTAACCA 2280
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1470 CCGAGCGGATATGCAGTTTCCGGTGGAAGAACCGGCGCCACCACCACCGGTGGTTAACCA 1529
Query 2281 AAGTAACGGTGTGTCCGACCCGGTTATCAT-CCCGGGCGGGTCAATCCAAACCCGAGACT 2339
|| ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 1530 AACCAACGGTGTGTCAGACCCGGTTATCATACCC-GGCGGATCAATCCAAACCCGAGACT 1588
Query 2340 ACTACACTGACTCATCGTCTCGGAGGCGGAAAAGTCTCGACAGGTC---TAGCTCCATGA 2396
|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1589 ACTATACTGACTCATCGTCAAGGAGGCGGAAAAGTCTCGACAGGTCTAGTAGCTCCATGA 1648
Query 2397 GGAAGACGGCTGCATCGGTTGTGGCGGATATGGACGAGCCAAAACTTTCAGTGTCGTCGG 2456
|||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1649 GGAAAACGGCTGCAGCCGTTGTGGCGGATATGGACGAGCCAAAGCTTTCAGTGTCGTCGG 1708
Query 2457 CTATATCAATTGACGCTTACTCAGGATCACTGAGAG---ACAACAATTACGCGGCGGAGA 2513
|||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||
Sbjct 1709 CTATATCAATTGACGCTTACTCAGGATCACTGAGAGATAACAACAACTACGCCGTGGAGA 1768
Query 2514 CGACGGATAACGGCTTTTTCCGGGAACCGGCGGTGATGATCGGCGAGAGGAAAGTGAATA 2573
|| | |||||||| | |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1769 CGGCAGATAACGGATCTTTCCGGGAACCGGCGATGATGATCGGCGATAGGAAAGTGAATA 1828
Query 2574 GTAACGATAGTAACAAGAAATCAAGACGATGGGGGAAATGGAGCATCTTAGGGCTTATTT 2633
||||||||| ||||||||| || ||||| |||||||| |||||||| ||||| |||||||
Sbjct 1829 GTAACGATAATAACAAGAAGTCGAGACGGTGGGGGAAGTGGAGCATTTTAGGACTTATTT 1888
Query 2634 ACAGGAAGAGTGTTAACAAGTATGAGG-A-A-GAGGAGGAGGAAGAGGATAGGTATAGGA 2690
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1889 ACAGGAAGAGTGTTAACAAGTATGAGGAAGAGGAGGAGGAGGAAGAGGATAGGTATAGGA 1948
Query 2691 GATTAAACGGTGGAATGGTGGAGAGATCGTTATCGGAGTCATGGCCGGAGCTGAGAAACG 2750
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1949 GATTAAACGGTGGAATGGTGGAGAGATCGTTATCGGAGTCATGGCCGGAGCTGAGGAATG 2008
Query 2751 GTGGAGTAGTAGGAGGAGGTCCGAGGATGGTGAGGAGTAATAGCAATGTGAGCTGGAGGA 2810
| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 GAGGAGGAGGAGGAGGAGGGCCGAGGATGGTGAGGAGTAATAGCAATGTGAGCTGGAGGA 2068
Query 2811 GTTCCGGTGGTGGATCAGCGAGGAAAGTTAACGGATTGGATAGGAGGAATAAGAGTTCAA 2870
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2069 GTTCCGGAGGTGGATCAGCGAGGAAAGTCAACGGATTGGATAGGAGGAATAAGAGTTCAA 2128
Query 2871 GGTACTCACCTAAGAATGGGGAAAACGGAATGTTGAAGTTTTACTTGCCACATATGAAAG 2930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 GGTACTCACCTAAGAATGGGGAAAACGGAATGTTGAAGTTTTACTTGCCACATATGAAAG 2188
Query 2931 GTAGCCGGAGAATGAGCGGTGCAGGAGGAGGAGGCGGTGGTGGTGGTGGAGGCGGCGGGT 2990
||| ||||||||||||||| ||||||||| ||| ||||| || || ||||| | |
Sbjct 2189 CTAGTCGGAGAATGAGCGGTACAGGAGGAGCAGGAGGTGGCGGCGGCGGAGG-G-----T 2242
Query 2991 GGGCGAATAGTCACGGGCATTCTATAGCGAGGAGTGTAATGAGGCTGTATTGATCAACAA 3050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2243 GGGCGAATAGTCACGGGCATTCTATAGCGAGGAGTGTAATGAGGCTGTATTGATCAACAA 2302
Query 3051 A-TTGTTCATTGGATGGTTTAGGGGTTTAGCTCTATGAAGTCTCAAGCTTTGGttttt-- 3107
| ||||||||||||||||||| || |||||||||||| || || ||||| |||||
Sbjct 2303 AATTGTTCATTGGATGGTTTAA---TT-AGCTCTATGAAG-CTGAACCTTTG-TTTTTAG 2356
Query 3108 t-ttt--ttAATTTCG-TTGG-TT-CGGTGCAATTGGTTTACCTTT-TAATGTTAAGG-G 3159
| ||| || ||| | || || |||| |||||||||||| ||| ||||||||||| |
Sbjct 2357 TATTTCGTTGGTTTAGGTTTAATTTCGGTTCAATTGGTTTAC-TTTGTAATGTTAAGGAG 2415
Query 3160 GG-AGGCATTTTCAAACGAATCACTTGTTGTCGTTGTCTATTTTAACCGGAATAAACCGC 3218
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 GGGATGCATTCTCAAACGAATCACTTGTTGTCGTTGTCTATTTTAACCGGAATAAACCGC 2475
Query 3219 CTTTCGACCAGC 3230
| ||||||||||
Sbjct 2476 CATTCGACCAGC 2487
Score = 1210 bits (655), Expect = 0.0
Identities = 765/815 (94%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 1 TTTTCCTTTAATAATTCttttgttttgtttttttCTTGTTCATCTCCTTTCTCTTTCAAT 60
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 TTTTTCTATAATAATTCTTTTGTTTTGTTTTTTTCTTGTTCATCTCCTTTCTCTTTCAAT 84
Query 61 TACCGTTGGAACAAGACGAAGTTTCAGAGACAACACTACTCAAtctctctctctctctAA 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 85 TACCGTTGGAACAAGACGAAGTTTCAGAGACAACACTACCCAATCTCTCTCTCT----AA 140
Query 121 CCTCAA-TGTTGTCTTTCTCTCTATAAGCCAGA--CCAGACAGTGATGACGATGTTGTAA 177
||| || |||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 141 CCTTAAGTGTTGTCTTTCTCTCTATAAGCCAGAGACCAGACAGTGATGACGATATAGTAT 200
Query 178 ATGAGACCAGAGGGAGGATTAGCCACCATTTCCCGTCATGAATCCAGCTACAGACCCAGT 237
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 201 ATGAGACCAGAGGGAGGATTAACCACCATTTCCCGTCATGAATCCAGCTACTGACCCAGT 260
Query 238 CTCTGCCGCCGCAGCTGCTCTAGCTCCGCCTCCACAACCTCCGCAGCCTCACCGTCTCTC 297
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTCCGCCGCCGCAGCTGCTCTTGCTCCGCCTCCACAACCTCCGCAGCCTCACCGTCTCTC 320
Query 298 TACCTCTTGTGACCGTCACCCAGAAGAGCGGTTCACCGGTTTTTGCCCTTCTTGTCTCTG 357
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TACCTCTTGCAACCGTCACCCAGAAGAGCGGTTCACCGGTTTTTGCCCTTCTTGTCTCTG 380
Query 358 TGAACGTCTCTCAGTCTTAGATCAGAACAACAATGGCGGTGCCTCTTCTTCTTCTTCCTC 417
|||||||||||||||||||||||||| ||||||||||||| || || ||||||||||
Sbjct 381 TGAACGTCTCTCAGTCTTAGATCAGACCAACAATGGCGGT---TC--CT-CTTCTTCCTC 434
Query 418 TAAAAAACCTCCGACCATCTCTGCTGCGGCTCTCAAGGCTCTCTTTAAGCCTTCTGGAAA 477
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 TAAAAAGCCTCCGACCATCTCTGCTGCGGCTCTCAAGGCTCTCTTTAAGCCTTCCGGAAA 494
Query 478 CAACGGAG-GAGGCGGTGGAAACAACAA-CGGAAACGGCCGGGTTAAACCCGGATTCTTC 535
|||||||| | ||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 495 CAACGGAGTG-GGCGGTGTAAATA-CAAACGGAAACGGCCGGGTTAAACCCGGATTCTTC 552
Query 536 CCGGAGCTTCGTCGGACGAAATCTTTCTCAGCGTCTAAGAACAACGAAGGATTCTCCGGC 595
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 553 CCGGAGCTCCGTCGTACGAAATCTTTCTCAGCATCCAAGAACAACGAAGGATTCTCCGGC 612
Query 596 GTGTTTGAGCCACAACGTAGGTCTTGTGACGTCAGACTTCGAAGCTCTCTGTGGAACTTG 655
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 613 GTGTTTGAGCCACAACGTAGGTCTTGTGACGTCAGGCTTCGAAGCTCTCTTTGGAACTTG 672
Query 656 TTTAGCCAAGATGAGCAACGAAACCTTCCAAGCAATGTCACCGGCGGTGAGATTGAGGTG 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 TTTAGCCAAGATGAGCAACGAAACCTTCCAAGCAATGTCACCGGCGGTGAGATTGATGTC 732
Query 716 GAGCCGAGGAAATCTAGCGTTGCGGAGCCTGTTTTAGAGGTTAACGACGAAGGAGAAGCT 775
|||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 733 GAGCCGAGGAAATCAAGCGTTGCGGAGCCTGTTCTAGAGGTAAACGATGAAGGAGAAGCT 792
Query 776 GAAAGTGACGACGAAG---TTGAAGAGGAGGAGGA 807
|||||||||||||||| ||||||||||||||||
Sbjct 793 GAAAGTGACGACGAAGAACTTGAAGAGGAGGAGGA 827
> AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:2766367-2768430 REVERSE LENGTH=2064
Length=2064
Score = 1212 bits (656), Expect = 0.0
Identities = 727/762 (95%), Gaps = 2/762 (0%)
Strand=Plus/Plus
Query 808 AGGGTTTCTTA-ATTGGATGTGGAAAGAGGGTTTTAAGCCGGATGTGTTTAGTTACAGCA 866
|||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 507 AGGGTTTC-TAGATTGGATGTGGAAAGAGGGGTTTAAGCCTGATGTGTTTAGTTACAGCA 565
Query 867 CTGTGATCAACGATCTTGCGAAAACTGGAAAATTGGATGATGCATTGGAACTGTTCGATG 926
||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||
Sbjct 566 CTGTGATCAACGATCTTGCTAAAGCTGGGAAATTGGATGATGCACTGGAACTGTTCGATG 625
Query 927 ATATGTCTGAAAGAAGAGTGGCACCTGATGTTACGTGTTATAATATCTTAATTGATGGGT 986
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 626 AAATGTCTGAAAGAGGAGTGGCACCTGATGTCACGTGTTATAATATCTTAATTGATGGGT 685
Query 987 TTCTTAAGGAAAAAGATCACAAGATGGCTATGCAACTGTGGGACAAACTGTTGGAGGACT 1046
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 686 TTCTTAAGGAAAAAGATCACAAGACGGCTATGGAACTGTGGGACAGACTGTTGGAGGACT 745
Query 1047 CTTCTGTTTATCCGAATGTTAAGACTCACAACATCATGATTAGTGGTTTGAGCAAATGTG 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 746 CTTCTGTTTATCCGAATGTTAAGACTCACAACATCATGATTAGTGGTTTGAGCAAATGCG 805
Query 1107 GAAGAGTAGATGATTGTTTGAAGATATGGGACAGAATGAAACAGAATGAGCGAGAAAAAG 1166
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 806 GAAGAGTAGATGATTGTTTAAAGATATGGGAGAGAATGAAACAAAATGAGCGTGAAAAAG 865
Query 1167 ATTTGTATACATATAGCAGTTTGATACATGGGCTGTGCGATGAAGGGAATGTTGATAAGG 1226
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 866 ATTTATATACATATAGCAGTTTGATACATGGGCTGTGCGATGCAGGTAATGTTGATAAGG 925
Query 1227 CTGAAAGTGTGTTTAACGAGTTGGTCGAAAGGAAGGCCTTTATTGATGTGGTTACATACA 1286
|||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 926 CTGAAAGTGTGTTTAATGAGTTGGACGAAAGGAAAGCCTCGATTGATGTGGTTACATACA 985
Query 1287 ATACTATGCTTGGTGGGTTTTGCCGTTGTGGGAAAATTAAGGAGAGTTTGGAGTTATGGA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 986 ATACTATGCTTGGTGGGTTTTGCCGTTGTGGGAAAATTAAGGAGAGTTTGGAGTTGTGGA 1045
Query 1347 GAATCATGGAGCAGAGGAATTCAGTTAACATAGTGAGTTATAACATTTTGATAAAAGGGT 1406
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1046 GAATCATGGAGCACAAGAATTCAGTTAACATAGTGAGTTATAACATTTTGATTAAAGGGT 1105
Query 1407 TGTTGGAGAATGGGAAGATCGATGAAGCAACAATGATTTGGAGGCTTATGCCTGCCAAGG 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TGTTGGAGAATGGGAAGATCGATGAAGCAACAATGATTTGGAGGCTTATGCCTGCCAAGG 1165
Query 1467 GCTATGCAGCTGACAACACAACTTATGGTATTTTTATTCACGGGTTATGTGTGAATGGTT 1526
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1166 GCTATGCAGCTGACAAAACTACTTACGGTATTTTTATTCACGGGTTATGTGTGAATGGTT 1225
Query 1527 ATGTAAATAAAGCCTTGGGGGTGATGCAAGAGGTGGAGAGCA 1568
|||| |||||||||||||||||||||||||||||||||||||
Sbjct 1226 ATGTGAATAAAGCCTTGGGGGTGATGCAAGAGGTGGAGAGCA 1267
> AT5G01170.1 | Symbols: | Protein of unknown function (DUF740)
| chr5:58162-60136 FORWARD LENGTH=1975
Length=1975
Score = 122 bits (66), Expect = 2e-26
Identities = 136/167 (81%), Gaps = 15/167 (9%)
Strand=Plus/Plus
Query 1712 GAAGAGGAGTTGAAGCCAATTAAGGATTACATAGATCTTGATACT--CAAACCAAGAAGC 1769
|||||||| ||||||||||| ||||||||||| |||| | |||| ||||| ||||| |
Sbjct 745 GAAGAGGAATTGAAGCCAATGAAGGATTACATGGATC-T-CTACTCACAAACAAAGAAAC 802
Query 1770 CATCGGT----G----CGAC-GGAGTTT-TTGGTCGGCGGCCTCTGTTTTCAGCAAGAAG 1819
| ||||| | || | ||||||| || |||||||||||||||||||||||||||
Sbjct 803 CGTCGGTGAAAGATTTCGCCGGGAGTTTCTT-TTCGGCGGCCTCTGTTTTCAGCAAGAAG 861
Query 1820 CTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGGAACGG 1866
||||||||||||| |||||| || ||| ||||||||| | | |||||
Sbjct 862 CTTCAGAAATGGAAGCAGAAGCAGAAGGTGAAGAAGCCGAGAAACGG 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160684718429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5