BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478218
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09080.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3727 0.0
> AT3G09080.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:2776259-2781785 REVERSE LENGTH=3081
Length=3081
Score = 3727 bits (2018), Expect = 0.0
Identities = 2378/2549 (93%), Gaps = 36/2549 (1%)
Strand=Plus/Plus
Query 497 AGGTTGAAAAATGTTTTGCTCTATCTGCATCCAGTGGATTGATAGCCTGCGCTTGCAGCA 556
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 557 AGGTTCAAAAATGTTTTGCTCTATCTGCATCCAGTCGATTGATAGCCTGCGCTTGCAGCA 616
Query 557 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATACAATTTT 616
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 617 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATCCAGTTTT 676
Query 617 CAGATGCTAAAAGCAGCAACACTGAAAATCAGTCTCATTCAGCAGAACTCAAAAATACAG 676
|||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| ||
Sbjct 677 CAGATGCTAAAAGCAGCAACACTGAAAATCTGTCTCAATCACCAGAACCCAAAAATATAG 736
Query 677 AATCTCCGCCTGTTATTTTTCCGGACGCAGTTGCTTGCCAGTTTTCTACCAAAGATAAGC 736
||||| |||||| ||| || ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 737 AATCTTCGCCTGGTATCTTCCCGGACGCAGTTGCTTGTCAGTTTTCTACCACAGATAAGC 796
Query 737 TCGTTGTCATCTATGGGGATCGTAGTCTCTATGTTTGGGATGTGAACGATGTGAACAAGC 796
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 797 TCGTTGTCATCTATGGGAATCGTAGTCTCTATGTTTGGGATGTGGATGATGTGAACAAGC 856
Query 797 CTACTAGGTTCTCGATGATGATATCACATTCTGCCGGAATTCGGGATATCAAAAACCTCT 856
||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 857 CTACTAGGTGCTCCATGATGATATCACACTCTGCCGGAATTTGGGATATCAAAAACCTCT 916
Query 857 CTTGTGGAAATTTGCACAGTCCAACAGCTGCATGTGTAGCTAGGGGATGCAGTGAAGGGG 916
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 917 CTTGTGGAAATATGCACAGTCCAACAGCTGCATGTGTAGCCAGGGGATGCAGTGAAGGGG 976
Query 917 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTTGAAG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 977 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTCCAAG 1036
Query 977 TGGGTCC---AGCAGCCAACGCAAGCAGTAATCCCTCAGAATCTTCCACACAAGGGATTA 1033
|| ||| || |||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1037 TGAATCCGTTAGAAGCCAATGCAAGCAGCAATCCCTCAGAATCTTCAACACAGGGGATTA 1096
Query 1034 TGCATTTAGCTAGCGCTGGAATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1093
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGCATTTAGCTAGCGCTGGCATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1156
Query 1094 TT-GGTTTCCGAGCACTGG-TAGTAAGTGAAGATGGAAAGTACTTAGCAGCTGGGGACTG 1151
|| ||||| || ||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 1157 TTGGGTTT-CGGGCACTGGCT-GTAAGTGAAGATGGAAAGTACTTAGCAGCTGGTGACTG 1214
Query 1152 TGGAGGGAACCTTCATATATATGACCTACAAGAATCAGAATATACATGCTTTACGGATGC 1211
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1215 TGGAGGGAACCTTCATATATATGATCTGCAAGAATCAGAATATACATGCTTTATGGATGC 1274
Query 1212 TCATGAAGCAGAAATTCAGTCATTGAGCTTCAGCTCTCCTGGACTGA-AAGACGTTGATT 1270
|||||||||||||||||||||||||||||| |||| ||||| ||||| || |||||||||
Sbjct 1275 TCATGAAGCAGAAATTCAGTCATTGAGCTTTAGCTTTCCTGTACTGACAA-ACGTTGATT 1333
Query 1271 CTGAAAATGCCTCAAGCAGCGATTTCTTGCTTGTTTCTGGTGGGAAGGGCCGAGCGATCC 1330
||||||||||||| | | | |||||||| ||||||||| |||||||| || || |
Sbjct 1334 CTGAAAATGCCTC-A--A--G----CTTGCTTGCTTCTGGTGGAAAGGGCCGCGCAATTC 1384
Query 1331 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGAAGTGTTTGTGGTTCAGCTGCTG 1390
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1385 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGGAGTGTTTGTGGTTCAGCTGCTG 1444
Query 1391 TAACTTCTGTTAAATTTGCATGTAATGGCCAGAAAATGTTAACTTCTGGTGCAGATAGGT 1450
|||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1445 TAACTTCTGTTAAATTCGCATGCAATGGCCGGAAAATGTTAACTTCTGGTGCAGATAGGT 1504
Query 1451 TGCAGCTGTTTGACGTTGTCAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATCCTA 1510
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1505 TGCAGATGTTTGACGTTAACAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATACTC 1564
Query 1511 AAACTCTCTCTCATGGAACCATCTATGATGTGGTTGTAGATCCAACATCAGGACTTGTTG 1570
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1565 AAACTCTCTCTCATGGAACGATCTATGATGTGGCTGTAGATCCAACATCAGGACTTGTTG 1624
Query 1571 TCACAGTGGGACAGGATAAGAAGATAAACATATTCGACATAGGCAGTGGAAAGCTTGTTA 1630
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1625 TCACAGTGGGACAGGATAAGAAGATAAACATATTTGACATAGAAAGTGGAAAGCTTGTCA 1684
Query 1631 GATCATTCAAGCAAGACAGAGACCATGGAGATCCCTTAAAGGTCATTTTGGACCCAAGCT 1690
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1685 GATCATTCAAGCAAGACCGAGACCATGGAGATCCCGTAAAGGTCATTTTGGACCCAAGCT 1744
Query 1691 ACAGCTACTTAGTATGCTCCTACTCTAACAGGACAATCTGCTTTGTCGA-TTTCGTCACC 1749
|| |||||| |||||||||||||||||||||||||| |||||||| || ||| ||||||
Sbjct 1745 GCAACTACTTGGTATGCTCCTACTCTAACAGGACAATTTGCTTTGTGGACTTT-GTCACC 1803
Query 1750 GGAGAGTTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1809
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GGAGAGCTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1863
Query 1810 CCTGATTGCAAACATATCATTTCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1869
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1864 CCTGATTGCAAACATATCATATCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1923
Query 1870 CCTCTGCGAATGGCTACTCGTATTATACAGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1929
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1924 CCTTTGCGAATGGCTACTCGTATTATACGGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1983
Query 1930 GCCCAACTTGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAAAGAT 1989
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1984 GCCCAACTGGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAATGAT 2043
Query 1990 GCATCATGTTCTGCAAACTATAAGCCAGTAGAAGAGAACGCAGATCAGATGCAGCAGCAA 2049
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2044 GCATCATGTTCTGCAAACTATAAGCCAGTAGAGGAGAACGCAGATCAGATGCAGCA--A- 2100
Query 2050 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGACTTCCTAAGTGGGCTCAA 2109
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2101 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGGCTTCCTAAATGGGCTCAA 2160
Query 2110 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAGGATTCCATTTCAAACCAGAAA 2169
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2161 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAAGATTCCATTTCAAACCAGAAA 2220
Query 2170 CATGAAGATAAAAGTCTGGCAAATACTGTTGTTGACTGTGCTGAAGAATGCTCTTCTGTA 2229
||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||
Sbjct 2221 CATGAAGATAAAAGTATGGCAAATACTATTG---ACAATGCTGAAGAATGCTCTTCTGTG 2277
Query 2230 AATCTTGATTGCCAAACTCCCAAACAAGGTTCAA-AAGCCGAAAATTCATGCCTTGGAAG 2288
|||||||| | |||||||||||| |||||||||| || |||||||| |||||||||||||
Sbjct 2278 AATCTTGAATACCAAACTCCCAAGCAAGGTTCAAGAA-CCGAAAATGCATGCCTTGGAAG 2336
Query 2289 TCTTTCCAAAAGCTCCAGCGATACTGAAACTTCAGTCCTTCAAAGAGATGATCCTAGCCA 2348
|| ||||||||||||| ||||||||||||||||| |||||| |||||||||||||| |
Sbjct 2337 CCTGTCCAAAAGCTCCAACGATACTGAAACTTCAGGGCTTCAAGGAGATGATCCTAGCAA 2396
Query 2349 CAAGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATTC 2408
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2397 TAGGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATAC 2456
Query 2409 TCCAAACATCCAAGCACCTTTCATTATACAACAGAAACCTGAGAATTTCTGCACCAAACA 2468
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2457 TCCAAACATCCAAGCATCTTTCATTAAACAACAGAAACCTGAAAATTTCTGCACCAAACA 2516
Query 2469 TTCTGCCGGGCATGGGGG-CATGCTCAAGCAGTTTGATAACAGTTTGTCAATGATAGACG 2527
|||||||||||| ||||| |||| |||| ||||||||||||||||||||||| ||||||
Sbjct 2517 TTCTGCCGGGCA-GGGGGACATGTTCAAACAGTTTGATAACAGTTTGTCAATAATAGACA 2575
Query 2528 AGGTTGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCTTCCCAGTTTTTCCTAAGAA 2587
| || ||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 2576 ATGTCGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCGTCTCAGTTTGTCCTAAGAA 2635
Query 2588 GAGACTACATCGGCGGAAGC-AAACAATTTATGCGTACGCCCTCCCAGAAATCAGGGTAC 2646
|||||||||| ||||||| | |||||||||| |||||| |||||||| ||||||||||||
Sbjct 2636 GAGACTACATTGGCGGAA-CTAAACAATTTACGCGTACACCCTCCCAAAAATCAGGGTAC 2694
Query 2647 AAGACTTTGAGGTCGATCCAAGAACATCTCCCTCTTGATACGGTGAAAGATCAATCTTCA 2706
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 2695 AAGACTTTGAGGTCGATCCAAGAACATATCCCTCTTGATACGGTGAATGATCAATCTTCA 2754
Query 2707 CATAGTTCAGAAGAACATCCTGAACAGGACAAGACGTCTTCAGAAGTATTCCATGATACA 2766
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2755 CATAGTTCAGAAGAACATCCTGAGCAGGACAAGACGTCTTCAGAAGTATTCCACGATACA 2814
Query 2767 CTTGCAGACGATTCACTTCAAGAAAGGATAACTTCCTGCCGTCAAGCATTACACGGTTTA 2826
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2815 CTTGCAGACGAGTCACTTCAAGAAAGGATAACTTCTTGCCGTCAAGCGTTACACGGTTTA 2874
Query 2827 AACGCTGCTGCTGCGGTTTTCGTCCAGTCAATGTCGGAATTATCTACAGCTTCTCCCCGA 2886
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2875 AACACTGCTGCTGCGGTTTTCGTCCAGTCAATATCGGAATTATCTACAGCTTCTCCTCGG 2934
Query 2887 GATCAAATCTCAGGTGAACTTAGAGATCAGTTGTTTGATGAAGCAGCTCTGATGATTCCA 2946
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 2935 GATCAAATCTCAGGTGAACTTAGAGCTCAGTTGTTTGATGAAGCAGCTTTAATGATTCCA 2994
Query 2947 AAAT-TGTCTCATAAAGTTAATGAAGTTGTTGCCAAGATAATGCCTGCGCACAAAAATAG 3005
| | ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||
Sbjct 2995 GA-TGTGTCTCATAAAGTTAGCGAAATTGTTGCCAAGATAATGCTTGAGCACAAAAATAG 3053
Query 3006 AAAC-AGTGATAGAATGTTCTCCAATTAG 3033
|| | |||||||||||||| |||||||||
Sbjct 3054 AA-CTAGTGATAGAATGTTGTCCAATTAG 3081
Score = 654 bits (354), Expect = 0.0
Identities = 411/439 (94%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTAAGCCAGAAATTAAAGAAGCCTAGTTCATCCACCAAGCTAATTCTACAAGAG 60
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGAAGCTGAGCCAGAAATTAAAGAAGCCTAGCTCATCCACGAAGCTAATTCTACAAGAG 60
Query 61 ATCATCGGTTTGACGAC-AACAAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGGTTTGACGACGAA-GAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119
Query 120 ATGTGTTTACTTGGCGGGATGTGTTGTGGTAGTCTACGATGTAGGTTCTTTCACTCAATC 179
|||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 120 ATGTGTTTACTTAGCGGGATGTGTTGTGGTAGTCTACGATGTAGATTCGTGCACTCAGTC 179
Query 180 GCATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTTGCGGTTTCGCAGAA 239
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 180 ACATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTGGCGATTTCGCAGAA 239
Query 240 TGGGCGATTTGTAGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTGGCATT 299
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGGGAGATTTGTTGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTAGCATT 299
Query 300 TCATGGAAAGCAAACTGATAATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTGGTATC 359
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TCATGGAAATCAAACTGATGATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTTATATC 359
Query 360 AATCAATAGAGTGAACTCTAGTGGAATTGACGAACAAAGTGACGAATTTATCTCAATATA 419
| ||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 360 AGCCAACAGAGTGAACTCTAGTGGAAGTGACGAACAAATTGACGAAGTTATCTCAATATA 419
Query 420 CGCTCTCACAGAAGCAGGT 438
|||||| ||||||||||||
Sbjct 420 CGCTCTAACAGAAGCAGGT 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150801830658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5