BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478219 Length=550 Score E Sequences producing significant alignments: (Bits) Value AT3G09085.1 | Symbols: | Protein of unknown function (DUF962) ... 695 0.0 > AT3G09085.1 | Symbols: | Protein of unknown function (DUF962) | chr3:2782133-2782740 FORWARD LENGTH=608 Length=608 Score = 695 bits (376), Expect = 0.0 Identities = 514/575 (89%), Gaps = 31/575 (5%) Strand=Plus/Plus Query 1 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAA---C-A-AT--A-ATC--- 49 ||||||||||||||||||||||||||||||||||||||||| | | || | ||| Sbjct 7 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAAGCTCGAGATCAATATCGAA 66 Query 50 ----G---A-AAAA-TAGGGTTTTAATTTGAGAGAGAAGATGAATTTTAGAAGCTTTGAG 100 | | |||| |||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 67 TAAGGATCACAAAATTAGGGTTTTAATTTGATAGAGAAGATGAATTTCAGAAGCTTTGAG 126 Query 101 GAGTTCTGGCCTTTCTACGTGATGCAACACTCGAATCCGTTAACGAGACGGTGGCACTTC 160 |||||||||||||||||| ||||||||||||||||||| | ||| || ||| ||||||| Sbjct 127 GAGTTCTGGCCTTTCTACATGATGCAACACTCGAATCCATCGACGCGAAGGTTGCACTTC 186 Query 161 ATAGGTATAATCGCGAGCATCGTGGCTTTGCTGTGTTCGATTTTGATCAACTGGTGGTTC 220 |||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||| Sbjct 187 ATAGGTATCATCGCGAGCATCGTTGCTTTGATATGTTCGATTTTGATCAACTGGTGGTTC 246 Query 221 GTT-GCTCTGGTGCCTCTCCTTGGGTACGGGTTCGCGTGGTTTAGCCACTTCTTCGTGGA 279 || |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| Sbjct 247 -TTAGCTCTGGTGCCTCTGCTTGGGTACGGATTCGCGTGGTATAGCCACTTCTTCGTGGA 305 Query 280 AGGGAATGTTCCGGCAAGCTTCGGGCATCCCCTTTGGTCGTTTCTCTGCGATCTCAAGAT 339 ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 306 AGGGAATGTTCCGGCGAGCTTTGGGCATCCGCTTTGGTCGTTTCTCTGCGATCTCAAGAT 365 Query 340 GTTTAGTCTGATGCTTACAGGAAGCATGGAGAGAGAGATGAAGAGACTCGGTAAGAGGCC 399 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 366 GTTTAGTCTGATGCTCACAGGAAGCATGGAGAGAGAGATGAAGAGACTTGGTAAGAGGCC 425 Query 400 ATTGCTGCAACTCTCTTGAAGCAGAAG-A-A-ATCTTTATAGAATTGTTCTTGATTCTTC 456 |||| |||| |||||||||||||| || | | |||| ||||||||||||||||||||||| Sbjct 426 ATTGTTGCAGCTCTCTTGAAGCAGCAGCAGATATCTCTATAGAATTGTTCTTGATTCTTC 485 Query 457 TCATTGCGTTCTGCGATTGGATTT-AGACTCGAGATTTGTAATTACTTAATGGAATCGCT 515 | |||||||||||||||||||||| |||||| || ||||||||||||| ||||||||| | Sbjct 486 TTATTGCGTTCTGCGATTGGATTTTAGACTCCAG-TTTGTAATTACTTCATGGAATCGTT 544 Query 516 GTTTGCGACTGATCGATCATTCCTTCAAATTCAAA 550 |||||||| ||||| || ||| |||||||||||| Sbjct 545 GTTTGCGAATGATC-AT--TTC-TTCAAATTCAAA 575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26372927175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5