BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478219
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09085.1 | Symbols: | Protein of unknown function (DUF962) ... 695 0.0
> AT3G09085.1 | Symbols: | Protein of unknown function (DUF962)
| chr3:2782133-2782740 FORWARD LENGTH=608
Length=608
Score = 695 bits (376), Expect = 0.0
Identities = 514/575 (89%), Gaps = 31/575 (5%)
Strand=Plus/Plus
Query 1 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAA---C-A-AT--A-ATC--- 49
||||||||||||||||||||||||||||||||||||||||| | | || | |||
Sbjct 7 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAAGCTCGAGATCAATATCGAA 66
Query 50 ----G---A-AAAA-TAGGGTTTTAATTTGAGAGAGAAGATGAATTTTAGAAGCTTTGAG 100
| | |||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 67 TAAGGATCACAAAATTAGGGTTTTAATTTGATAGAGAAGATGAATTTCAGAAGCTTTGAG 126
Query 101 GAGTTCTGGCCTTTCTACGTGATGCAACACTCGAATCCGTTAACGAGACGGTGGCACTTC 160
|||||||||||||||||| ||||||||||||||||||| | ||| || ||| |||||||
Sbjct 127 GAGTTCTGGCCTTTCTACATGATGCAACACTCGAATCCATCGACGCGAAGGTTGCACTTC 186
Query 161 ATAGGTATAATCGCGAGCATCGTGGCTTTGCTGTGTTCGATTTTGATCAACTGGTGGTTC 220
|||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 187 ATAGGTATCATCGCGAGCATCGTTGCTTTGATATGTTCGATTTTGATCAACTGGTGGTTC 246
Query 221 GTT-GCTCTGGTGCCTCTCCTTGGGTACGGGTTCGCGTGGTTTAGCCACTTCTTCGTGGA 279
|| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 247 -TTAGCTCTGGTGCCTCTGCTTGGGTACGGATTCGCGTGGTATAGCCACTTCTTCGTGGA 305
Query 280 AGGGAATGTTCCGGCAAGCTTCGGGCATCCCCTTTGGTCGTTTCTCTGCGATCTCAAGAT 339
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 306 AGGGAATGTTCCGGCGAGCTTTGGGCATCCGCTTTGGTCGTTTCTCTGCGATCTCAAGAT 365
Query 340 GTTTAGTCTGATGCTTACAGGAAGCATGGAGAGAGAGATGAAGAGACTCGGTAAGAGGCC 399
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 366 GTTTAGTCTGATGCTCACAGGAAGCATGGAGAGAGAGATGAAGAGACTTGGTAAGAGGCC 425
Query 400 ATTGCTGCAACTCTCTTGAAGCAGAAG-A-A-ATCTTTATAGAATTGTTCTTGATTCTTC 456
|||| |||| |||||||||||||| || | | |||| |||||||||||||||||||||||
Sbjct 426 ATTGTTGCAGCTCTCTTGAAGCAGCAGCAGATATCTCTATAGAATTGTTCTTGATTCTTC 485
Query 457 TCATTGCGTTCTGCGATTGGATTT-AGACTCGAGATTTGTAATTACTTAATGGAATCGCT 515
| |||||||||||||||||||||| |||||| || ||||||||||||| ||||||||| |
Sbjct 486 TTATTGCGTTCTGCGATTGGATTTTAGACTCCAG-TTTGTAATTACTTCATGGAATCGTT 544
Query 516 GTTTGCGACTGATCGATCATTCCTTCAAATTCAAA 550
|||||||| ||||| || ||| ||||||||||||
Sbjct 545 GTTTGCGAATGATC-AT--TTC-TTCAAATTCAAA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5