BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478225
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09120.1 | Symbols: | Protein of unknown function (DUF674) ... 1476 0.0
> AT3G09120.1 | Symbols: | Protein of unknown function (DUF674)
| chr3:2796958-2798764 REVERSE LENGTH=1625
Length=1625
Score = 1476 bits (799), Expect = 0.0
Identities = 1024/1132 (90%), Gaps = 18/1132 (2%)
Strand=Plus/Plus
Query 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAA-AACCCTCTTGAGATTCGTAACT 59
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAAGAAAACTCTTGAGATTCGTAACC 60
Query 60 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTGTTCACGTCTTCATAGCCTA-ATATC 118
|||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||| |
Sbjct 61 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTATTCACATCTTCATA-CCGAGATACC 119
Query 119 TAAATTCTCAGTTACTGCTCTTCCTTG-TTTTGCTCTTACTCGTTTCCTTAACCTACAAT 177
|||| ||||||||||||||||||||| |||| |||||||||||||||||||| || |||
Sbjct 120 TAAAACCTCAGTTACTGCTCTTCCTTGCTTTT-CTCTTACTCGTTTCCTTAACTTAAAAT 178
Query 178 GGC-AAGAAGTGCGAAGTTTAGCTTGAAACTTCTCGTTGATGAGAAGAAAAACAAAGTTG 236
||| ||| |||| |||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 179 GGCTAAG-AGTGAGAAGATTAGCTTGAAACTTCTCGTTGATGAGAAAAAAAACAAGGTTG 237
Query 237 TGTTAGCTGAGGCTGGTCATGATTTTGTTGATGTGCTCTTTGGTCTCTTGACACTCCCAA 296
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 TTTTGGCTGAGGCTGGTCAAGATTTTGTTGATGTGCTCTTTGGTCTCTTGACATTCCCAA 297
Query 297 TGGGGACTATTGCAAGATTGCTGGAGAATCATCAGAAGTTACCACAAGTCTTAGGTTGTT 356
|||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||
Sbjct 298 TGGGGACTATTGCAAGATTGCTGGAGAAGCATCAGAAGTTACCACAAATCCTAGGATGTT 357
Query 357 ACAAGAATCTTAAACAAAGTGTTTCAGATATGGTCATTGATGATTTCGAGACCGAGGCTT 416
|||||||||||| | ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 358 ACAAGAATCTTAGTCGAAGTGTTTCAGATATGGCCGTTGATGATTTCAAGACCGAGGCTT 417
Query 417 GCAAGAGTATGTTGCTTTCTCCAAAGAGTTCGAAGGAGATCCATTGCAGAAGACTCAAGT 476
| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 418 GTAAGAGTATGTTGCTTTCTCCAAAGAGCTCCATGGAGATCCATTGCAGAAGACTCAAAC 477
Query 477 TGAACATTGATGATACTGC-GGCCACAACGTTCTATGTATGCTCTAAATTGTATGAGAGC 535
|| |||||||||||||| | ||| |||| ||||||||||||||| ||| | ||||||||
Sbjct 478 TGCACATTGATGATACT-CAGGCTACAATGTTCTATGTATGCTCAAAAAAGCATGAGAGC 536
Query 536 GACTCATGTAAGGTATACAGCAATTTTTACAACTCAAGATGTAGCTGTGGATCTTTGATG 595
|||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 GACTCAAGTAA-GTAT--AGCAATTTTTACAAATCAAGATGTAGCTGTGGATCTTTGATG 593
Query 596 AGCTATTC-GGTTCAGGTTCCAGAAGACGCGCAAGTTCTAGAGTTGTTAGGGAATGCTGT 654
| ||| || | |||| ||||||||||| | ||||||| |||| | |||||| |||||||
Sbjct 594 ATCTA-TCAGATTCATGTTCCAGAAGATGAGCAAGTTGTAGACTCGTTAGGAAATGCTGA 652
Query 655 AGATGGTGTGTTTGTTAGCTGTAGATCCTCTTTCATTGTCACAAATGATTTGAAAGTGAT 714
||||| ||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct 653 AGATGTTGTGTTTGTTAGCTGTAGATCATCTTTCATTCTGACAGATGATTTGAAAGTGAT 712
Query 715 GTTGAACTCTATTGATGAAATAGTGAAGGTGGTCAATGGCCTAGGATATCCAAATTTAAA 774
|||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 713 GTTGAATTCTATCGATGAAATAGTCAAGGTTCTCAATGGCCTAGGATATCCAAATATAAA 772
Query 775 TGAGCTGCAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTGCTGTCTCTACTGGGGAA 834
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 773 CGATCTTAAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTTTTGTCTCTACTGGGGAA 832
Query 835 TTTATTCACTTCCGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGAGCATGACAAC 894
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 833 TTTATTCACTTCAGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGTGTATGACGAC 892
Query 895 GATGCTTCCATTGCCGCCTCCACCAATGTTCAAAACTGGAAC-AGTAGAACAGGGCAGTG 953
||||||| || || | ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 893 GATGCTTACACTGTCACCTCCACCAATGTTCAAAACTGG-ACGGGTAGAACAGGGCAGTG 951
Query 954 GATGCCATATGAAAGTGTTCGTTGGAAAGTTAGACAGGAAGATTCTTTATGCTGAGTGCA 1013
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 952 GATGCCATATTAAAGTGTTCGTTGGAAAGTTAGACAGAAAGATTCTTTATGCTGAGTGCA 1011
Query 1014 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTCCCTCTTGAGTCGGCGTCTT 1073
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1012 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTGCCTCTCGAGTCGGCGTCTT 1071
Query 1074 CGCTCTCC-AATGACAATACCATTTTTGGATGTGTCAAGAATTTGTGCAGAT 1124
|| ||| | || |||||||||||| | |||||||| |||||||||||| |||
Sbjct 1072 CGTTCTTCGAA-GACAATACCATTATCGGATGTGTAAAGAATTTGTGCTGAT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5