BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478226
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09130.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1537 0.0
> AT3G09130.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42786.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2799312-2800505
FORWARD LENGTH=1194
Length=1194
Score = 1537 bits (832), Expect = 0.0
Identities = 1077/1194 (90%), Gaps = 21/1194 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAACAGAT-AGCTGATGAGATTGGTTCTCTTTCCCTCGTCACTGGCTGCAAAAT 59
||| ||||||| || | ||||||||||| ||||| ||||| | |||||||| | |
Sbjct 1 ATGCCGAAACATATCA-TTGATGAGATTGAATCTCTCTCCCTTGCCACTGGCTTTATCCT 59
Query 60 CAAGAATGAGGATTTAACTGAAGAGAAGAGCTTAATGGTGAAGCCAACCATGGGCAGGAC 119
|||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 60 CAAGAATGGGGATTTTACTGAGGAGAAAAGCTTGCTGGTGAAGCCAACCATGGGCGGGAC 119
Query 120 CTGGCACTGGTCTCCAATAGAGGGTCTTCACTCACAGGATTCAATCAGGCATACTCATGC 179
||||||||||||||| ||| | ||||||||||||||||||||||||||| | |||| |||
Sbjct 120 CTGGCACTGGTCTCCTATAAAAGGTCTTCACTCACAGGATTCAATCAGGAAGACTCGTGC 179
Query 180 CTATATATTGCAAGAGATTGCAAGGATGACCATCTATCCCGAGGCCGGTGTCAG-CCATA 238
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 180 CTACATATTGCAGGAGATTGCAAGGATGACCATCTATCCCGAGGCCGGTGTCAGTCC-TA 238
Query 239 CCTTGAGACACAAGAAGGGTATTGTCATTGGGGTGGCGAGAGCCGTGTCCACTGAGCTGT 298
||||||| | ||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 239 CCTTGAGGCGCAAGAAGGGTATTGTCATTGGGGTGGCCAGAGCTGTGTCTACTGAGCTGT 298
Query 299 ATCACATTGTTGACAATGACCTCATA-ATGGAGGAGATGGACACAGCGAAATTGGCAACG 357
|||||||||| || |||||||||||| | |||||||||||||||||||||| |||| |
Sbjct 299 ATCACATTGTCGAGAATGACCTCATAGA-GGAGGAGATGGACACAGCGAAACTGGCGGTG 357
Query 358 GAATACGATAGG-AAAACCATAGTGATCAAAAACGACGTGGACTCAAAGTGGAAGGAGGA 416
| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGATACGAT-GGCGAAACCATAGTGATCAAAAACGACGTGGACTCAAAGTGGAAGGAGGA 416
Query 417 GCTGTCCAAACCTTTGAAATTGTCTGAAACCGAAAATAAAGTGATTCAAAGACTGCTCTT 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTGTCCAAACCTTTGAACTTGTCTGAAACCGAAAATAAAGTGATTCAAAGACTGCTCTT 476
Query 477 AATCGCTCATGGAGTGATTCCCCTCCAGGGGTACTCATTGGTCACGACTTCCCACCATTA 536
|||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 477 AATCTCCCATGGAGTCATTCCCCTCCAGGGCTACTCATTGGTCACGACTTCCCACCACTA 536
Query 537 CAATGACCAGTCGAAGAGAGCATTTTCCATGGTGGAGAGGCAATTCTTTTCTCGCTTTGA 596
||||||| |||||||||||||||||||| |||||||||||| || |||||||||| |||
Sbjct 537 CAATGACAAGTCGAAGAGAGCATTTTCCGCGGTGGAGAGGCAGTTTTTTTCTCGCTGTGA 596
Query 597 CCAATTCTCTTGGTGGAAAGAGGATGAAGAGGCCTTAAGGGACGCCATGTGGCACAAGGC 656
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 597 CCAATTATCTTGGTGGAAAGAGGATGAAGAAGCCTTAAGGGACGCTATGTGGCACAAGGC 656
Query 657 TGGACACCCAGTGAAGATATCTTTCAAGAAGGAGATTGCATGCAGTAATACCATTAAGCA 716
|||||| |||||||||||||||||||||||||||||||| ||||||| ||| || |||||
Sbjct 657 TGGACATCCAGTGAAGATATCTTTCAAGAAGGAGATTGCCTGCAGTATTACTATCAAGCA 716
Query 717 GAGTCTAATTAACGCAGGTATTCAGAGCG-CTGCATTTAGGCTCCCTGCTACTGAAGACG 775
|||||| ||||||||||||| ||||| | |||| |||||||||||| ||||||||||
Sbjct 717 GAGTCTGGCTAACGCAGGTATTGGGAGCGTC-GCATGTAGGCTCCCTGCCACTGAAGACG 775
Query 776 CCGTTATG-AAGGCTGGAGCCTACAGGAAACTTTTAAAAACTTTGTCACCTATCTTCGAT 834
|||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 TCGTT-TGGAAGGCTGAAGCCTACAGGAACCTTTTAAAAACTTTGTCACCTATCTTCGAT 834
Query 835 GATGAGGTCAAGTGGGAGGCTCTTGATGAGATGCTATCATATCTGGATAATTTTTCAGCT 894
||||||||||||||||||||||||||||||||| ||||||||||| || |||| || |||
Sbjct 835 GATGAGGTCAAGTGGGAGGCTCTTGATGAGATGTTATCATATCTGAATCATTTCTCCGCT 894
Query 895 GCTAGGCCAACAGAGGTAGTTACCGTTCACAACGCGCCTACTCACCTCCTGAGCATGGAC 954
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 895 GCTAGGCCAACAGAGGTAGTGACCGTTCACAACGCGCCTACTCACCTCATGAGCTTGGAC 954
Query 955 ACGAGGGAGAAGGTGGTGGTTTGGATTGCACAATGGTGCTCTCAGAACGCTGAAAAAGTA 1014
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACGAGGGAGAAGGTCGTGACATGGATTGCACAATGGTGCTCTCAGAACGCTGAAAAAGTA 1014
Query 1015 GCTATTTGTTTAGGGTTTCACACGGCCATGTCT-GAAAAGGCTGGAAAGTTTGTCTGG-C 1072
|||||||||||||| |||||||||||| || || ||||| |||||||||||| | || |
Sbjct 1015 GCTATTTGTTTAGGCTTTCACACGGCCTTG-CTTGAAAACGCTGGAAAGTTTCCC-GGAC 1072
Query 1073 CCTCCCACTCGCTCTCTG-TACTCAAGAGAACCAATGTTGACTCCTGCATCTTAGGGAGA 1131
||||| |||||||| || |||||| || | ||||||||||||||| ||||||||||| |
Sbjct 1073 CCTCCTACTCGCTCA-TGGTACTCA-GA-A-CCAATGTTGACTCCTACATCTTAGGGACA 1128
Query 1132 AAACTTTTCTCTGATTACACTGTCTTCAAGGCCAAGCTTCGTCAAATCATGGAC 1185
|| |||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1129 AAGCTTTTCTCTGATTATACCGTCTTCAAGGCCAAGCTTCGTCAACTCATGGAC 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5