BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478227
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09140.1 | Symbols: | Protein of unknown function (DUF674) ... 880 0.0
> AT3G09140.1 | Symbols: | Protein of unknown function (DUF674)
| chr3:2800853-2802795 REVERSE LENGTH=1856
Length=1856
Score = 880 bits (476), Expect = 0.0
Identities = 623/692 (90%), Gaps = 18/692 (3%)
Strand=Plus/Plus
Query 1 AATCTCCGATGGCTGAGAGTACAGAGACAGAGAAGCTAAGTCTGAGACTTCTCATAGATG 60
||||||| ||||||||||||||| || || | ||||||||| ||||||||||||||||||
Sbjct 15 AATCTCCAATGGCTGAGAGTACAAAGTCAAAAAAGCTAAGTGTGAGACTTCTCATAGATG 74
Query 61 AACAGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTGCTCTTTA 120
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 75 AACTGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTTCTCTTTA 134
Query 121 GTTTTCTCGCACTTCCCATGGGAACTATTGTAAGATTGCTTGAGGAACATCGGAAATCGC 180
|||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 135 GTTTTCTCGCTCTTCCCATGGGAACTATTGTTAGATTGCTTGAGAAACATCAAAAATCGC 194
Query 181 CTCAAGTGGTTGTAGGATGTTTTAACAATCTTTACAAAAGTGTTTCAGAGATGGGTATTG 240
||||||||| | |||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 195 CTCAAGTGGGTATAGGATGTTTCAACAATCTTTACAAAAGTGTTTCAGAGATGGATCTTG 254
Query 241 AGAGTTTTCAGACAGAAGCATGTAAGCAAATTCTACTGTATCCTAGGAGTGTGAATCTTG 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 255 AGAGTTTTCAGACAGAAGCATGTAAGCAAGTTCTACTGTATCCTAGGAGTGTGAATCTTG 314
Query 301 AGAAGTACAGAAAGATTAAGTTGAAAATAGATGACAC-AGAGGCTGTCAAGTACTTTGTT 359
|||||| |||||| || ||||||||||| |||||||| || |||||| ||||||||||||
Sbjct 315 AGAAGTTCAGAAATATGAAGTTGAAAATTGATGACACTAG-GGCTGTTAAGTACTTTGTT 373
Query 360 TGCTCAGGTGTTCACTACAGAGAATCCTGCAGAACTTT-TTATAGCATTTCGAACAAGGA 418
|||||||| || || | ||||||||||||| | | ||||||||||||||||| |||
Sbjct 374 TGCTCAGGC-TT---TA-A-AGAATCCTGCAGA-CATCATTATAGCATTTCGAACACGGA 426
Query 419 GGAATGTGAATGTGGAGAGTAT-GA-GAACTCGTATTTTGTCAGAAGATTGATGAATTGG 476
|||||||||||||||||| || | || |||| | |||||| |||| |||||||| ||
Sbjct 427 GGAATGTGAATGTGGAGAA-ATTGTTGA-CTCGAAGGTTGTCAAAAGAGTGATGAATCGG 484
Query 477 GAGATTCTGAGACCTGAA-AAGGAACAAGTTCAAGGAAGCATTTTTAGAAAGGATAATGA 535
|||||| | ||| |||| ||| | |||||||||||||| ||||| ||||||||||||||
Sbjct 485 GAGATTAAGGGACTTGAAGAAG-AGCAAGTTCAAGGAAGGATTTTGAGAAAGGATAATGA 543
Query 536 TGGAGTTTTTGTCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGC 595
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TGGAGTTTTTTTCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGA 603
Query 596 GGCGAGCTCTATGGATTATGTTTTGAATACTCTCAGAGGCTTAGGCTACGAAAATTCT-C 654
|||||||||||||||| ||||||||||||||||||||||||||||||||| | || || |
Sbjct 604 GGCGAGCTCTATGGATAATGTTTTGAATACTCTCAGAGGCTTAGGCTACGCAGATACTTC 663
Query 655 ACAAGCTCGGTGAAATACTTCTTGATGTCGGT 686
||||||| |||||||||||||| ||||||||
Sbjct 664 -CAAGCTCAGTGAAATACTTCTTCATGTCGGT 694
Score = 479 bits (259), Expect = 4e-134
Identities = 362/407 (89%), Gaps = 26/407 (6%)
Strand=Plus/Plus
Query 755 TCCATCTTTGCAAGGATCTGGAGACGGAGCAGGACCAGGCCAAACCATAACTTTTAAAGC 814
|||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 895 TCCAACTTTGCAAGGATCTGGAGATGGAGCAGTACCAGGCCAAACCATAACTTTTAAAGC 954
Query 815 ATTTGTTAGAAAACCGGACACCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 874
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATTTGTTAGAAAACCGAACATCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 1014
Query 875 TCTTCTTTTCACCTTTT-TAGCTTTGCCACTTGAATCCGTCTGGGACATCTCTGGAGACA 933
|||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| || |
Sbjct 1015 TCTTCTTTTCAC-TTTTCTAGCTTTGCCACTTGAATCTGTCTGGAACATCTCTGCAGGGA 1073
Query 934 GTATCAGTTTAGGCTGTATTGGAAACTTATTCAGAAGCTTCAAGAGTTTGAATGAAGGAA 993
|||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1074 ATATCAGTTTAGGTTGTATTGGAAACTTATTCAGAAGCTTCAAGAG----AAT------- 1122
Query 994 CTGATGCTTCATCCTCTTCCAAAAGCCA-GCTCCCTTCGTTTTATAGCTGCCCTAAACAG 1052
||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||
Sbjct 1123 -TGATGCTTCATCCTCTTCCAAAA-CCAAGCTTCCTTCGTTTTATAGTTGCCCTAAACAG 1180
Query 1053 TTACTTGATGTCGTCACTGAGAAACAAGAGATCTATTGCAGTTTCAA-TC-GCTCTGTTG 1110
||||||||||||||||||||| ||||||||||||||||||||||||| | | || ||||
Sbjct 1181 TTACTTGATGTCGTCACTGAGCAACAAGAGATCTATTGCAGTTTCAAGTGTG-TC-GTTG 1238
Query 1111 ATAA--AACCTA-TGGGTATGACTTTAAGTTCACTAGGAAGAGGCCT 1154
| || || || || ||||||||||||||||||||| |||| ||||
Sbjct 1239 A-AACTAA--TAATGAGTATGACTTTAAGTTCACTAGAAAGATGCCT 1282
Score = 398 bits (215), Expect = 1e-109
Identities = 314/359 (87%), Gaps = 18/359 (5%)
Strand=Plus/Plus
Query 1161 AAAACAGCAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTTTCA 1220
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1377 AAAACA-CAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTCTCA 1435
Query 1221 AACATTAGTTTGCTAAATTTGAAAATGCACATGGAGAAGGAAGATGTTGAAGAACAAGTG 1280
||||||||||||||||| ||||| |||||| |||| || ||||||||||||||||| |||
Sbjct 1436 AACATTAGTTTGCTAAAGTTGAACATGCACTTGGATAAAGAAGATGTTGAAGAACATGTG 1495
Query 1281 ATCACCATAGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCTGTGATAACATCCTCA 1340
|||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1496 ATCACCATTGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCCCTGATGACATCCTCA 1555
Query 1341 GCTTTAACTACTTGTTTCTGGAGCTTAATCGCGAAGAAGGCCAAAGAAGAAATTTAACTC 1400
|||||||||| || |||||||||||||||| ||||||||||||||| ||| | |||
Sbjct 1556 GCTTTAACTAGTTCTTTCTGGAGCTTAATCTCGAAGAAGGCCAAAGCAGAGA-----CTC 1610
Query 1401 AGTAGTTATGTAC--CAGTAT---C-ATCTCCTATTTTAACTTT-ATCAAAAAACACTAT 1453
||||||||||| | || ||| | |||| ||||||||||||| |||||||||||| ||
Sbjct 1611 AGTAGTTATGTTCATCAATATGTTCCATCTTCTATTTTAACTTTTATCAAAAAACACAAT 1670
Query 1454 TAGTACTCGTCATGTTTATCTTCTTATTGAATGAAGTT-CATCCAAACTGAGTCAATTA 1511
| || | |||||| ||||||||||| ||||| || || ||| || ||||||||||||
Sbjct 1671 TTGT-C--GTCATGCTTATCTTCTTACTGAATAAA-TTACATTGAACCTGAGTCAATTA 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5