BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478229
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09150.2 | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin ... 1978 0.0
> AT3G09150.2 | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin
oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
| chr3:2803528-2805564 FORWARD LENGTH=1358
Length=1358
Score = 1978 bits (1071), Expect = 0.0
Identities = 1219/1288 (95%), Gaps = 20/1288 (2%)
Strand=Plus/Plus
Query 1 AAGAATTGAAGAGAGTGTCGGAGGAAGGAGACC-TTGAGTTATCAATTTGTGATTGTTGT 59
||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||||| | ||||
Sbjct 76 AAGAATTGAAGAGAGTGTCCGAGGAAGGAGACCTTTG-GTT-TCAGTTTGTGAGTCTTGT 133
Query 60 TGTAATGGCTTTGTCAATGGAGTCTGGATTTTCAATTGGGTCGTGCTTCAAGGCACCAAA 119
|||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 134 TGTAATGGCTTTATCAATGGAGTTTGGGTTTTCAATTGGGTCATGCTTCAAGGCACCAAA 193
Query 120 CCCTCCTGTTCTAATCTCTGCAAGCCCTAAGAAGATCAATTTCACGTCGAGAAGGAG-AA 178
||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||
Sbjct 194 CCCACCTGTTCTAATCTCTGCAAGCCCTAATAAGATCAATTTCACGTTGAGAAGGAGAAA 253
Query 179 GTAAAAGATTCTTATTTAGAGTCTCTGCTGTTTCCTACAAGGAATTCGCAGAGTCTGCTT 238
| |||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 254 G-AAAAGATTCTTACTTAGAGTCTCTGCTGTGTCGTATAAGGAATTCGCAGAGTCTGCTT 312
Query 239 TAGAAGAAACCAGGAAAAAGATCGTTCTTGAACCTTCACATCTCCAGGAAAAGTATAGTA 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TAGAAGAAACCAGGAAAAGGATCGTTCTTGAACCTTCACATCTCCAGGAAAAGTATAGTA 372
Query 299 GCATGACAGGATTGGATGGGAGGACGGAACTTCGAATGCTTGCTTTTAAATCTTCAAAGA 358
||||||||||| | ||||| | ||| ||||||| ||||||||||||||||||||||||||
Sbjct 373 GCATGACAGGACTAGATGGTAAGACCGAACTTCAAATGCTTGCTTTTAAATCTTCAAAGA 432
Query 359 TTAGACTCTTGCGGAGTATGGCAATAGAGAATGAGACAATGCAGGTCTTTGACTTTGCAG 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 433 TTAGACTCTTGAGGAGTATGGCAATAGAGAATGAGACAATGCAGGTCTTTGACTTTGCGG 492
Query 419 GTTTCATGGAGCCTGAGTATGATACTCCCATATTCTGTGCTAACTTCTTCACATCTGCCA 478
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 493 GTTTCATGGAGCCTGAGTATGATACTCCCATATTCTGTGCTAACTTTTTCACATCTACCA 552
Query 479 ACGTGAACATAGTTGTATTGGACCTTAATCCTTTGCATCAGCTGACTGACCAGACGGATT 538
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 553 ACGTTAACATAGTTGTATTGGACCTTAATCCTTTGCATCAGTTGACTGACCAGACGGATT 612
Query 539 ACCAAGACAAGTATTATAACAAGATCATGTCCATATATCACAAATATGCTGAGACTTTCC 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 613 ACCAAGACAAGTATTATAACAAGATAATGTCCATATATCACAAATATGCTGAGACTTTCC 672
Query 599 CATGGGGAGGGAAATTGACTGGTGAATCCATAAAGtttttttCGCCTTTGGTGATGTGGA 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 673 CATGGGGAGGGAAATTGACTGGTGAATCCATAAAGTTTTTCTCGCCTTTGGTGATGTGGA 732
Query 659 CCAGGTTTTCGTCTAGCCAAGAAAAACATAAGGCTTTGTTCTCTGCGTTTCTCGAGTACT 718
| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 733 CTAGGTTTTCGTCTAGCAAAGAAAAACATAAGGCTTTGTTCTCTGCGTTTCTAGAGTACT 792
Query 719 ACCAGGCATGGCTTGAGATGACAATCCAAGTGAGGGAGGAGATGGAACCATCTCAGGTGA 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 793 ATCAGGCATGGCTTGAGATGACAATCCAAGTGAGGGAGGAGATGGAACCATCTCATGTGA 852
Query 779 TAGCCAATTGTGAAGCACAACACAAGTACCTGACATGGCGAGCACAAAAGGATCCTGGAC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GAGCCAATTGTGAAGCACAACACAAGTACCTGACATGGCGAGCACAAAAGGATCCTGGAC 912
Query 839 ATAGTCTTCTTAAAAGATTAGTTGGTGAAGCAAAGGCAAAGGAGCTGCTAAGGGATTTCC 898
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 913 ATGGTCTTCTTAAAAGATTAGTAGGTGAAGCAAAGGCAAAGGAGCTGCTAAGGGATTTCC 972
Query 899 TGTTCAATGGGGTCGATGAGTTAGGCACAAAAACATTCATTGATTACTTTCCAGAGTACC 958
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TGTTCAATGGGGTGGATGAGTTAGGCACAAAAACATTCATTGATTACTTTCCAGAGTACC 1032
Query 959 AAACAGAAGATGGAACTGTAAGCGATAAACGAAGTATCATTGGGAAGTCATATGAAACTC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AAACAGAAGATGGAACTGTAAGCGATAAACGAAGTATCATTGGGAAGTCATATGAAACTC 1092
Query 1019 GGCCATGGGATTTAACAGGACAATTTATCAGCTAACAATGAATATATGTGAACAAGTTC- 1077
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1093 GTCCATGGGATTTAACAGGACAATTTATCGGCTAACAATGA-TATATGTGAACAAGT-CA 1150
Query 1078 GATTTCAGAGTCATCAACACAAGAGGAAGTGAACTTAGGGAAGTAGGAATAAAAAAGAGC 1137
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1151 GATTTCAGAGTCATCAACACAAGAGGACGTGAACTTAGGGAAGTAGGAATAAGAAAGAGC 1210
Query 1138 AGCATGATGAGGAGTCTCTCAGGTCTATCTCCATCTCAAGATGATTGTTTGACTTACCAT 1197
||||||| | | |||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1211 AGCATGA-G-G-AGTCTCTCAGGTCTATCTGCATTTCAAGATGATTGTTTGAGTTACCAT 1267
Query 1198 GCATTGTAGTTTAACAAGTATTACAAGTGTAACTCTCAGCCCTTCATCAAAAGGAGAATT 1257
|||||||||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct 1268 GCATTGTAGTTT------TA---CAAGTGTAGCTCTCAGCCCTTCATCAAAATGAGAATC 1318
Query 1258 CTCGAGTATGATATGATTTTAATGAAAA 1285
||||||||||||||||||||||||||||
Sbjct 1319 CTCGAGTATGATATGATTTTAATGAAAA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5