BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478232

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09160.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   265    3e-70


> AT3G09160.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr3:2805779-2807055 REVERSE LENGTH=865
Length=865

 Score =  265 bits (143),  Expect = 3e-70
 Identities = 198/223 (89%), Gaps = 9/223 (4%)
 Strand=Plus/Plus

Query  231  CTTCTCTATAGTGTATCTAGTGGGGA-AAGACGCAGTAGACGAGGCCCCAAAGCTTAGTG  289
            ||||||||||||||||||| | |||| |||||||| ||||| |||||||||| |||||||
Sbjct  595  CTTCTCTATAGTGTATCTACT-GGGAGAAGACGCAATAGACAAGGCCCCAAAACTTAGTG  653

Query  290  GGACCGACATGGGAGGGGGGCACAAAGTAGTTGTTCGGTTTGTTGCTTACCATGGAAGAA  349
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  654  GGACCGACATGGGAGGGGGGCGCAAAGCAGTTGTTCGGTTTGTTGCTTACCATGGAAGAA  713

Query  350  CCATTGTCCACCCCCGCCGCCACAAAGGCCGCATCATTCGTGGCCGCCCA-AGGGAAAAG  408
             |||| |||||||||||||||| ||||||||||||||| ||||||||||| | | |||||
Sbjct  714  ACATTTTCCACCCCCGCCGCCAGAAAGGCCGCATCATTTGTGGCCGCCCAGATG-AAAAG  772

Query  409  CGGAATATGGCTGAAA-AA-GAAGA-AGAT-AAGAAGCCAAAG  447
            |  || |||||||  | || ||||| | || ||||||||||||
Sbjct  773  CCAAAGATGGCTGCCATAATGAAGATA-ATTAAGAAGCCAAAG  814


 Score =  204 bits (110),  Expect = 7e-52
 Identities = 137/149 (92%), Gaps = 6/149 (4%)
 Strand=Plus/Plus

Query  85   ACTCGCAATTCTTCTCTCTGGAGGT-ATGCTTTTATTTATTTTGTGGGAGAAGGCGCAGC  143
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct  324  ACTCGCAATTCTTCTCTCTGGA-GTCATGCTTTTATTTATTTTGTGGGAGAAGGCACAGC  382

Query  144  AGACAAGGCGTTACAACTTAATGGAAGTGACATGGGAGGATGGACTGTCGATGCTGAGGC  203
            ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  383  AGACAAGGCCTTGCAACTCAATGGAAGTGACATGGGAGGATGGACTGTCGATGCTGAGGC  442

Query  204  CT-TGCCCTTTCCTGAA-GAAGACGACAA  230
            |  | |||||||| ||| ||||| |||||
Sbjct  443  CGAT-CCCTTTCC-GAAAGAAGAAGACAA  469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5