BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478237
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09220.1 | Symbols: LAC7 | laccase 7 | chr3:2827239-2830542 ... 2905 0.0
> AT3G09220.1 | Symbols: LAC7 | laccase 7 | chr3:2827239-2830542
REVERSE LENGTH=1964
Length=1964
Score = 2905 bits (1573), Expect = 0.0
Identities = 1844/1973 (93%), Gaps = 26/1973 (1%)
Strand=Plus/Plus
Query 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTACTAGCTCTCCCTCATCtttttt 60
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTGCTAGCTCT--CTCATC--CTTC 56
Query 61 tCTCTAGAGATGGAGGGTGTTAGGGTTTCTCTTGCTTGCGCTCTATTTCTTTTCGCAGTC 120
|||||| |||||||||| ||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 57 TCTCTATAGATGGAGGGAGTTAGGGTTCCTATTGCTTGCGCTCTAATTCTTCTCGCAATC 116
Query 121 TCTTCGATAGCTTCTGCCGCCATTGTCGAACACACCTTCAACGTACAAAACTTAACGCTG 180
||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 117 TCTTCCATAACTTCTGCCTCCATTGTGGAACACACCTTCAACGTACAAAACTTAACGGTG 176
Query 181 TCTAGGCTGTGCAAACGGCAATTGATAACGGTAGTTAACGGAAGCCTACCTGGACCAACA 240
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 177 TCTAGGCTGTGCAAACGGCAAGTGATAACGGTCGTTAACGGAAGCCTGCCTGGACCAACA 236
Query 241 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTCCTAAACAATTCCCCTCACAAC 300
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 237 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTTCTAAACCATTCCCCTCACAAC 296
Query 301 ATCACAATTCATTGGCACGGGATCTTCCATAGACTAACAGTTTGGGCAGATGGACCGAGT 360
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 297 ATCACAATTCATTGGCATGGGATCTTCCATAAACTAACGGTTTGGGCAGATGGACCGAGT 356
Query 361 ATGATAACGCAGTGCCCAATACAGCCTGGCCATAGATACGCTTACAGATTCAACATCACC 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 357 ATGATAACGCAGTGCCCAATCCAGCCTGGCCAAAGATACGCTTACAGATTCAACATCACC 416
Query 421 GGCCAAGAAGGCACCTTGTGGTGGCACGCTCACGCGTCTTTCCTACGCGCCACCGTATAC 480
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 417 GGCCAAGAAGGCACCTTGTGGTGGCATGCACACGCGTCTTTCCTACGCGCCACCGTATAC 476
Query 481 GGTGCTCTTGTCATCCGACCTAAATCCGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 540
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 GGTGCTCTCGTCATCCGCCCTAAATCTGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 536
Query 541 GAAGTTCCCATCTTATTCGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAGTTCCCATCTTATTTGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 596
Query 601 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCTTCCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCGTCCC 656
Query 661 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGTCTAGACGTGGTGAAAGGGAAG 720
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 657 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGCCTAAACGTGGTGAAAGGAAAG 716
Query 721 AGATACTTACTTCGCATCATAAACGCGGCGATGAACATTCAAATGTTTTTCAAGATAGCC 780
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 717 AGATACTTACTTCGCATCATAAACGCGGCCATGAACATCCAACTGTTTTTCAAGATAGCC 776
Query 781 AATCACAGACTGACAGTTGTTGCCGCTGACGCAGTCTACACCGCACCTTATGTCACCGAC 840
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 777 AATCACAGACTGACAGTTGTAGCCGCCGACGCAGTCTACACCGCACCTTACGTCACCGAC 836
Query 841 GTCATCGTCATCGCACCTGGCCAAACCATTGACGCTCTTCTCTTCGCCGATCAGTCCATC 900
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 837 GTCATTGTCATCGCACCGGGCCAAACCATCGACGCCCTTCTCTTCGCCGATCAGTCCGTC 896
Query 901 GACACGTCCTACTACATGGCTGCTCATCCTTACGCCAGCGCTCCGAGC-GTCCCTTTCCC 959
|| || |||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 897 GATACCTCCTACTACATGGCAGCTCACCCTTACGCCAGCGCTCCC-GCCGTCCCTTTCCC 955
Query 960 AAACACCACCACTAGAGGCGTCATCCACTACGGTGGCGCGTCGAAAACACGGCGATCAAA 1019
|||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||||||
Sbjct 956 AAACACCACCACCAGAGGCGTCATTCACTATGGCGGCGCGTCGAAAACAGGGCGATCAAA 1015
Query 1020 GCCGGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCCCACAGATTCTA 1079
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 GCCCGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCTTACAGATTCTA 1075
Query 1080 CTCCAATCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCCACGTGGA 1139
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 CTCCAACCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCTACGTGGA 1135
Query 1140 CGAAGAGATGCTCGTAACCATCGGGCTTGGACTAGAGGCATGCGCAGATAACACCACGTG 1199
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1136 CGAAGAGATGCTCGTAACCATCGGTCTTGGGCTAGAGGCATGCGCAGATAACACCACGTG 1195
Query 1200 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1255
Query 1260 TTTGGAAGCGGTGTTTCACGGCGTTAATGGGATTTTCACAGCGGATTTTCCAGACCAGCC 1319
|||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 1256 CTTGGAAGCAGTGTTTCACGACGTTAAAGGGATTTTCACCGCGGATTTTCCAGACCAGCC 1315
Query 1320 TCCGGTTAAGTTCGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TCCGGTTAAGTTTGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1375
Query 1380 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAACT-CGACGGTGGAGGTGGTGT 1438
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1376 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAA-TACGACGGTGGAGGTAGTGT 1434
Query 1439 TGCAGAACCATGCGCTTATTGCGGCGGAGAGTCATCCCATGCACCTCCATGGATTCAATT 1498
| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 1435 TACAGAACCATGCGCTTATAGCGGCGGAGAGTCATCCCATGCATCTACATGGATTTAATT 1494
Query 1499 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGCAGCAAGTTAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1495 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGGAGCAAGTTAA 1554
Query 1559 ATCTTGTTAACCCGCAATTCCGTAACACATTGGCTGTGCCTGTTGGTGGATGGGCCGTGA 1618
|||| ||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1555 ATCTCGTTGACCCGCAATCCCGTAACACTTTGGCTGTCCCTGTTGGTGGATGGGCTGTGA 1614
Query 1619 CCCGTTTCACAGCTAATAATCCAGGTGCGTGGATTTTCCATTGTCATATCGATGTTCACT 1678
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1615 TCCGTTTCACTGCTAATAATCCAGGTGCGTGGATTTTTCATTGTCATATCGATGTTCACT 1674
Query 1679 TACCATTCGGACTAGGGATGGTACTTGTGGTTGAGAACGGCCCGACGAAGTCTTCCACCT 1738
|||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||
Sbjct 1675 TACCATTCGGACTAGGGATGATATTTGTGGTTAAGAACGGACCGACCAAGTCGACCACCT 1734
Query 1739 TGCCACCGCCACCACCGGATCTTCCCAAATGTTAGGCAAGATACAAAAAGG-T-TTTCTT 1796
|||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||| |
Sbjct 1735 TGCCACCGCCACCACCAGATCTTCCCAAATGTTAAGCAAGATAAAAAAAACATATTTCAT 1794
Query 1797 -GAAAACAATAAGAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTCAAATTAA 1855
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1795 CGAAAACAATAAAAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTC---TC-- 1849
Query 1856 GTGTCTCAAAATTTGTTTTGATGTAGTCTGTATTAATGAAATTGTATTGTAGTCCATTCA 1915
||||||| | ||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1850 -TGTCTCACA-TTTGTTTTGATGTAGTCGGTA--AA-GAAATTGTATTGTAGTCCATTCA 1904
Query 1916 TATGTT-T-ACCAATATTTGTGTGTGTTGTGAGTAATTTATATGATTTATTAT 1966
|||||| | |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1905 TATGTTGTTACCAAT-T--GTGTGTGCTGTGAGTAATTTATATGATTTATTAT 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97389057300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5