BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478237 Length=1966 Score E Sequences producing significant alignments: (Bits) Value AT3G09220.1 | Symbols: LAC7 | laccase 7 | chr3:2827239-2830542 ... 2905 0.0 > AT3G09220.1 | Symbols: LAC7 | laccase 7 | chr3:2827239-2830542 REVERSE LENGTH=1964 Length=1964 Score = 2905 bits (1573), Expect = 0.0 Identities = 1844/1973 (93%), Gaps = 26/1973 (1%) Strand=Plus/Plus Query 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTACTAGCTCTCCCTCATCtttttt 60 ||||||||||||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTGCTAGCTCT--CTCATC--CTTC 56 Query 61 tCTCTAGAGATGGAGGGTGTTAGGGTTTCTCTTGCTTGCGCTCTATTTCTTTTCGCAGTC 120 |||||| |||||||||| ||||||||| || |||||||||||||| ||||| ||||| || Sbjct 57 TCTCTATAGATGGAGGGAGTTAGGGTTCCTATTGCTTGCGCTCTAATTCTTCTCGCAATC 116 Query 121 TCTTCGATAGCTTCTGCCGCCATTGTCGAACACACCTTCAACGTACAAAACTTAACGCTG 180 ||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| || Sbjct 117 TCTTCCATAACTTCTGCCTCCATTGTGGAACACACCTTCAACGTACAAAACTTAACGGTG 176 Query 181 TCTAGGCTGTGCAAACGGCAATTGATAACGGTAGTTAACGGAAGCCTACCTGGACCAACA 240 ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 177 TCTAGGCTGTGCAAACGGCAAGTGATAACGGTCGTTAACGGAAGCCTGCCTGGACCAACA 236 Query 241 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTCCTAAACAATTCCCCTCACAAC 300 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 237 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTTCTAAACCATTCCCCTCACAAC 296 Query 301 ATCACAATTCATTGGCACGGGATCTTCCATAGACTAACAGTTTGGGCAGATGGACCGAGT 360 ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct 297 ATCACAATTCATTGGCATGGGATCTTCCATAAACTAACGGTTTGGGCAGATGGACCGAGT 356 Query 361 ATGATAACGCAGTGCCCAATACAGCCTGGCCATAGATACGCTTACAGATTCAACATCACC 420 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 357 ATGATAACGCAGTGCCCAATCCAGCCTGGCCAAAGATACGCTTACAGATTCAACATCACC 416 Query 421 GGCCAAGAAGGCACCTTGTGGTGGCACGCTCACGCGTCTTTCCTACGCGCCACCGTATAC 480 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 417 GGCCAAGAAGGCACCTTGTGGTGGCATGCACACGCGTCTTTCCTACGCGCCACCGTATAC 476 Query 481 GGTGCTCTTGTCATCCGACCTAAATCCGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 540 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 477 GGTGCTCTCGTCATCCGCCCTAAATCTGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 536 Query 541 GAAGTTCCCATCTTATTCGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 600 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GAAGTTCCCATCTTATTTGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 596 Query 601 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCTTCCC 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 597 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCGTCCC 656 Query 661 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGTCTAGACGTGGTGAAAGGGAAG 720 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| Sbjct 657 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGCCTAAACGTGGTGAAAGGAAAG 716 Query 721 AGATACTTACTTCGCATCATAAACGCGGCGATGAACATTCAAATGTTTTTCAAGATAGCC 780 ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct 717 AGATACTTACTTCGCATCATAAACGCGGCCATGAACATCCAACTGTTTTTCAAGATAGCC 776 Query 781 AATCACAGACTGACAGTTGTTGCCGCTGACGCAGTCTACACCGCACCTTATGTCACCGAC 840 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 777 AATCACAGACTGACAGTTGTAGCCGCCGACGCAGTCTACACCGCACCTTACGTCACCGAC 836 Query 841 GTCATCGTCATCGCACCTGGCCAAACCATTGACGCTCTTCTCTTCGCCGATCAGTCCATC 900 ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || Sbjct 837 GTCATTGTCATCGCACCGGGCCAAACCATCGACGCCCTTCTCTTCGCCGATCAGTCCGTC 896 Query 901 GACACGTCCTACTACATGGCTGCTCATCCTTACGCCAGCGCTCCGAGC-GTCCCTTTCCC 959 || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 897 GATACCTCCTACTACATGGCAGCTCACCCTTACGCCAGCGCTCCC-GCCGTCCCTTTCCC 955 Query 960 AAACACCACCACTAGAGGCGTCATCCACTACGGTGGCGCGTCGAAAACACGGCGATCAAA 1019 |||||||||||| ||||||||||| ||||| || ||||||||||||||| |||||||||| Sbjct 956 AAACACCACCACCAGAGGCGTCATTCACTATGGCGGCGCGTCGAAAACAGGGCGATCAAA 1015 Query 1020 GCCGGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCCCACAGATTCTA 1079 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1016 GCCCGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCTTACAGATTCTA 1075 Query 1080 CTCCAATCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCCACGTGGA 1139 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1076 CTCCAACCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCTACGTGGA 1135 Query 1140 CGAAGAGATGCTCGTAACCATCGGGCTTGGACTAGAGGCATGCGCAGATAACACCACGTG 1199 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1136 CGAAGAGATGCTCGTAACCATCGGTCTTGGGCTAGAGGCATGCGCAGATAACACCACGTG 1195 Query 1200 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1255 Query 1260 TTTGGAAGCGGTGTTTCACGGCGTTAATGGGATTTTCACAGCGGATTTTCCAGACCAGCC 1319 |||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| Sbjct 1256 CTTGGAAGCAGTGTTTCACGACGTTAAAGGGATTTTCACCGCGGATTTTCCAGACCAGCC 1315 Query 1320 TCCGGTTAAGTTCGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1379 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TCCGGTTAAGTTTGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1375 Query 1380 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAACT-CGACGGTGGAGGTGGTGT 1438 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 1376 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAA-TACGACGGTGGAGGTAGTGT 1434 Query 1439 TGCAGAACCATGCGCTTATTGCGGCGGAGAGTCATCCCATGCACCTCCATGGATTCAATT 1498 | ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 1435 TACAGAACCATGCGCTTATAGCGGCGGAGAGTCATCCCATGCATCTACATGGATTTAATT 1494 Query 1499 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGCAGCAAGTTAA 1558 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1495 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGGAGCAAGTTAA 1554 Query 1559 ATCTTGTTAACCCGCAATTCCGTAACACATTGGCTGTGCCTGTTGGTGGATGGGCCGTGA 1618 |||| ||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||| Sbjct 1555 ATCTCGTTGACCCGCAATCCCGTAACACTTTGGCTGTCCCTGTTGGTGGATGGGCTGTGA 1614 Query 1619 CCCGTTTCACAGCTAATAATCCAGGTGCGTGGATTTTCCATTGTCATATCGATGTTCACT 1678 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1615 TCCGTTTCACTGCTAATAATCCAGGTGCGTGGATTTTTCATTGTCATATCGATGTTCACT 1674 Query 1679 TACCATTCGGACTAGGGATGGTACTTGTGGTTGAGAACGGCCCGACGAAGTCTTCCACCT 1738 |||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||| Sbjct 1675 TACCATTCGGACTAGGGATGATATTTGTGGTTAAGAACGGACCGACCAAGTCGACCACCT 1734 Query 1739 TGCCACCGCCACCACCGGATCTTCCCAAATGTTAGGCAAGATACAAAAAGG-T-TTTCTT 1796 |||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||| | Sbjct 1735 TGCCACCGCCACCACCAGATCTTCCCAAATGTTAAGCAAGATAAAAAAAACATATTTCAT 1794 Query 1797 -GAAAACAATAAGAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTCAAATTAA 1855 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1795 CGAAAACAATAAAAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTC---TC-- 1849 Query 1856 GTGTCTCAAAATTTGTTTTGATGTAGTCTGTATTAATGAAATTGTATTGTAGTCCATTCA 1915 ||||||| | ||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 1850 -TGTCTCACA-TTTGTTTTGATGTAGTCGGTA--AA-GAAATTGTATTGTAGTCCATTCA 1904 Query 1916 TATGTT-T-ACCAATATTTGTGTGTGTTGTGAGTAATTTATATGATTTATTAT 1966 |||||| | |||||| | ||||||| |||||||||||||||||||||||||| Sbjct 1905 TATGTTGTTACCAAT-T--GTGTGTGCTGTGAGTAATTTATATGATTTATTAT 1954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97389057300 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5