BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478240
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09250.2 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1131 0.0
> AT3G09250.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr3:2839000-2840614 FORWARD LENGTH=892
Length=892
Score = 1131 bits (612), Expect = 0.0
Identities = 691/730 (95%), Gaps = 2/730 (0%)
Strand=Plus/Plus
Query 1 ATCTCTTTGAATATTTTGATTCCTTGTTTCCATGGCGCTTCATGGGTCTGGA-TTTTTAT 59
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 50 ATCTCTTTGAATATTTCGATTCCTTGTTACCATGGCGCTTCATGGGTCTGGAGTTTTT-T 108
Query 60 GCAAAGTTTCAAACATGGTAGAGATCACTTCTCTGTTTGGTGGTTCGATGAGGCTGCTTC 119
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 109 GTAAAGTTTCAAACATGGTAGAGATCACTTCTCCGTTTGGTGGTTCCATGAGGCTGCTTC 168
Query 120 ACTTGCCTAAATCTTATCCGATTCATTGCAACATGGTTTCAGCTAGCAATACATTCGGTT 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 169 ACTTGCCTAAATCTTATCCGATTCACTGCAACATGGTTTCAGCTAGCAATACATTTGGGT 228
Query 180 CTGGTCATCTCAAGCTTCAAAACAAAGAACCGTGCTCCCGTTTTAGGCCTTGTCGAGTCA 239
| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 229 CAGCTCATCTCAAGCTGCAAAACAAAGAACCGTGCTCCCGTTTAAGGCCTTGTCGAGTCA 288
Query 240 AACGCGAAGACAATAACCAAACTGCGGATGTTGAAAGCATTTCAGTGGATGAGACCACGT 299
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 289 AACGCGAAGAAAATAACCAAACTGCGGATGTTGAAAGCATTTCAATGGATGAGAACACGT 348
Query 300 TGAAGCAAGATCTCGAGATTGCGATCCAGGAAGAAAACTATGTGGAGGCAGCTAAAATCC 359
|||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||
Sbjct 349 TGAAGCAAGATCTCGAGACTGCGGTCCAGGAAGAGAATTATGTGGAGGCAGCTAAAATCC 408
Query 360 GGGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 468
Query 420 GGTTCTACCAATCTTTCAGAAACGGTGATTTAGCTGCAATGCAATCTTTGTGGTCAAAAT 479
||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||
Sbjct 469 GGTTCTACCAATCTTTCAGAAACGGGGATTTAGCTGCGATGCAATCACTATGGTCAAAAT 528
Query 480 CCGGAAACCCGTGCTGTGTGCATCCAGGGGCCAAAGGCATTACTGGGTATGATTACGTGA 539
| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 529 CAGGAAACCCGTGCTGTGTACATCCAGGGGCCAAAGGCATAACTGGTTATGATTACGTGA 588
Query 540 TGGAAAGCTGGGAATTTGTGTGGATGAACTATGAGTTTCCGTTACAGATTGAGCTGAAAG 599
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 589 TGGAAAGCTGGGAGCTTGTGTGGATGAACTATGAGTTTCCGTTACTGATTGAGCTGAAAG 648
Query 600 ATATTGAGGTTCATGTCCGAGGCGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 659
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 649 ATGTCGAGGTTCATGTCCGAGGAGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 708
Query 660 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATAGATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 709 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATCGATG 768
Query 720 GGCAATGGTT 729
| ||||||||
Sbjct 769 GACAATGGTT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5