BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478245
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-... 2676 0.0
AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family ... 1391 0.0
AT3G09310.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 104 3e-21
> AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-related
protein 3B | chr3:2857847-2860668 FORWARD LENGTH=1804
Length=1804
Score = 2676 bits (1449), Expect = 0.0
Identities = 1554/1603 (97%), Gaps = 14/1603 (1%)
Strand=Plus/Plus
Query 1 AAACAAGTGACAACGAAGACCAAGCAGGTCCAGCACACGATCCTAAATCCTGT--GCATC 58
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAACAAGTGACAACGAAGACC-AGCAGGTCCAGCACACGATCCTAAATCCTGTGAGCATC 59
Query 59 GTCTCCATCGCTGGTCTTCCATTATTGACGAATCTCTTTG-CtttttttCTTCCTTCTTA 117
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 GTCTCCATCGCTGGTCTTCCATTATTGACGAATCTCTTTGCCTTTTTTTCTTCCTTCTTA 119
Query 118 AACAAACCCAATTCGATTTCAACGAACGCCTCTTCTCTCTCACTCTCTTTCCCGATTTGT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 AACAAACCCAATTCGATTTCAACGAACGCCTCTTCTCTCTCACTCTCTTT--CGATTTGT 177
Query 178 TCATTTGCCGGAGCTCGTAGTGTAAGCG-GATCCGCGGCTGAGAGATGGCTCCTAATGAT 236
|| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 178 TC-TTTGCCGGAGCTCGTAGTGTAAGCGTGATCCGCGGCGGAGAGATGGCTCCTAATGAT 236
Query 237 CCTAAAAAAGCC---GGT---GGCGGAAGTGGTTTCTTCGCTTCTCTTGCTTCTTCGATC 290
|||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 237 CCTAAAAAAGCCGTTGGTGGCGGCGGAAGTGGTTTCTTCGCCTCTCTTGCTTCGTCGATC 296
Query 291 TCCAATTTGGGATCTGCTATGACCAAATCAGTTAATGGTTTGGTTCCCTATGAGGGGCTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 TCCAATTTGGGATCTGCTATGACCAAATCAGTTAATGGTTTGGTTCCCTATGAGGGACTT 356
Query 351 GAAGTTATCAATCCCGAAGGAAGTACAGATGATGCAGAGGAGGAAGCAAGCAGAGGAAGA 410
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 GAAGTTATCAATCCTGAAGGAAGTACAGATGATGCTGAGGAGGAAGCAAGCAGAGGAAGA 416
Query 411 TGGAAGCAAGAGGATCGAGATGGGTATTGGAAGATGATGCAGAAGTACATAGGATCTGAT 470
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGAAGCAAGAGGATCGAGATGGCTATTGGAAGATGATGCAGAAGTACATAGGATCTGAT 476
Query 471 GTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTCCAGAAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 GTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAA 536
Query 531 ATGGCAGAGTTGATGGAATACTCGCATCTCCTAGACATGGCAGACAAAACTGAGGACCCT 590
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 537 ATGGCGGAGTTGATGGAATACTCGCATCTGCTAGACATGGCAGACAAAACCGAGGACCCT 596
Query 591 TATATGCGCATGGTGTATGCATCATCATGGGCTATATCCGTGTATTATGCTTTCCAACGT 650
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 TATTTGCGCATGGTGTATGCATCATCGTGGGCTATATCCGTGTATTATGCTTTCCAACGT 656
Query 651 ACCTGGAAACCATTCAATCCAATCCTCGGTGAGACTTATGAGATGGCTAATTACAATGGT 710
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 657 ACCTGGAAACCATTCAATCCAATCCTTGGTGAGACTTATGAGATGGCTAATTACAATGGT 716
Query 711 GTTAACTTCATATCTGAACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTTAACTTCATATCTGAACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 776
Query 771 AATGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATTTCTGGGAAATTCC 830
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 777 AATGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATTTTTGGGCAATTCC 836
Query 831 ATTGACGTTTACCCAGTAGGAAGGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTGACGTTTACCCAGTAGGAAGGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTT 896
Query 891 GACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGAT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGAT 956
Query 951 TCGCCTGGGGAAATGATCATGACAAACCTGACCACCGGTGACAAAGTTGTGCTTTACTTT 1010
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 957 TCGCCTGGGGAAATGATCATGACAAATCAGACCACCGGTGACAAAGTCGTGCTTTACTTT 1016
Query 1011 CAACCATGTGGCTGGTTCGGATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAACCATGTGGCTGGTTCGGATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCC 1076
Query 1071 TCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG 1136
Query 1131 TGTGACGGTGAAGGTGAACCTCTCCCAGGCACCGAACTGAAAGAGGTATGGAAACTCGCT 1190
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGTGATGGTGAAGGTGAACCTCTCCCAGGCACCGAACTGAAAGAGGTATGGAAACTCGCT 1196
Query 1191 GATGTTCCAAAGGATGACAAATACCAATACACACACTTTGCTCACAAGATCAATAGTTTC 1250
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 1197 GATGTGCCAAAGGATGACAAATATCAATACACTCACTTTGCTCACAAGATTAATAGCTTC 1256
Query 1251 GACACTGCCCCGAAAAAGCTGTTGCCGTCTGATTCACGGTTACGACCTGATAGATACGCA 1310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1257 GACACTGCCCCGAAAAAGCTGTTGCCCTCTGATTCACGGTTACGACCTGATAGATACGCA 1316
Query 1311 CTTGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAAAGCAGCATGGAAGAGAGACAG 1370
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1317 CTTGAGATGGGCGACATGTCCAAATCAGGCTATGAGAAGAGCAGCATGGAAGAGAGACAG 1376
Query 1371 AGAGCTGAAAAGAGAACCCGCGAAGAGAAAGGCCAAGGCTTTACTCCTAAATGGTTCGAT 1430
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1377 AGAGCTGAAAAGAGAACCCGCGAAGAGAAAGGCCAAGCCTTTACTCCAAAATGGTTCGAT 1436
Query 1431 GTAACGGAAGAAGTCACTGCTACACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGA 1490
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1437 GTAACGGAAGAAGTCACTGCTACACCATGGGGTGATCTGGAAGTTTACCAATTCAATGGA 1496
Query 1491 AAGTACTCGGAGCATCGTGCAGCTGCCGATAACTCTGAAGATAACACTGACCCTAAGTCG 1550
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1497 AAGTACTCGGAACATCGTGCAGCTGCGGATAACTCTGAAGATAACACCGACCCTAAGTCG 1556
Query 1551 ATCCAATTCAACCCATGGCAATTTCAAGATCTGTCTACTTAAA 1593
||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1557 ATCCAATTCAACCCATGGCAATTCCAAGATCTGTCTACTTAAA 1599
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1693 TTCGTCGTCATAGTTATCTTCTTCTTCTT 1721
|||||||||||||||||||||||||||||
Sbjct 1776 TTCGTCGTCATAGTTATCTTCTTCTTCTT 1804
> AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family
protein | chr5:413520-416225 FORWARD LENGTH=1690
Length=1690
Score = 1391 bits (753), Expect = 0.0
Identities = 1149/1342 (86%), Gaps = 20/1342 (1%)
Strand=Plus/Plus
Query 261 GGTTTCTTCGCTTCTCTTGCTTCTTCGATCTCCAATTTGGGATCTGCTATGACCAAATCA 320
||||||||||| ||||||||||| || ||| ||||||| ||||| || |||| ||||||
Sbjct 150 GGTTTCTTCGCCTCTCTTGCTTCATCCATCACCAATTTCGGATCGGCCATGAGTAAATCA 209
Query 321 GTTAATGGTTTGGTTCCCTATGAGGGGCTTGAAGTTATCAATCCCGAAGGAAGTACAGAT 380
|| || |||||| | ||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 210 GTGAACGGTTTGATGGGATATGAAGGGCTTGAAGTGATTAATCCAGAAGGAAGTACAGAC 269
Query 381 GATGCAGAGGAGGAAGCAAGCAGAGGAAGATGGAAGCAAGAGGATCGAGATGGGTATTGG 440
||||||||||| |||||| | ||||||||||||||||||||||| || ||||| ||||||
Sbjct 270 GATGCAGAGGAAGAAGCAGGGAGAGGAAGATGGAAGCAAGAGGAACGTGATGGCTATTGG 329
Query 441 AAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATT 500
||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||
Sbjct 330 AAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATC 389
Query 501 ATTTTTGAACCAATGACAATGCTCCAGAAAATGGCAGAGTTGATGGAATACTCGCATCTC 560
||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| || |
Sbjct 390 ATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGTTGATGGAATACTCATATTTG 449
Query 561 CTAGACATGGCAGACAAAACTGAGGACCCTTATATGCGCATGGTGTATGCATCATCATGG 620
||||||||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||||
Sbjct 450 CTAGACATGGCTGACAAAACTGAAGATCCTTACATGCGTATGGTATATGCATCATCATGG 509
Query 621 GCTATATCCGTGTATTATGCTTTCCAACGTACCTGGAAACCATTCAATCCAATCCTCGGT 680
|||||||| |||||||| || | ||| ||||||||||| || ||||||||||| ||||||
Sbjct 510 GCTATATCTGTGTATTACGCCTACCAGCGTACCTGGAAGCCGTTCAATCCAATTCTCGGT 569
Query 681 GAGACTTATGAGATGGCTAATTACAATGGTG-TTAACTTCATATCTGAACAGGTCAGCCA 739
||||||||||||||| ||||| | ||||| | | || || ||| ||||||||||| ||||
Sbjct 570 GAGACTTATGAGATGACTAATCATAATGG-GATCAATTTTATAGCTGAACAGGTCTGCCA 628
Query 740 TCACCCACCAATGAGTGCTGGTCATGCTGAAAATGAGCATTTTACGTATGATTGTACTTC 799
||||||||||||||||||||||||||||||||| |||||||| | || ||||| |||||
Sbjct 629 TCACCCACCAATGAGTGCTGGTCATGCTGAAAACGAGCATTTCGCTTACGATTGCACTTC 688
Query 800 AAAACTGAAAACAAAATTTCTGGGAAATTCCATTGACGTTTACCCAGTAGGAAGGACACG 859
|||||||||||| ||||| || || || || ||||| || ||||||||||||||||||||
Sbjct 689 AAAACTGAAAACGAAATTCCTAGGCAACTCAATTGATGTCTACCCAGTAGGAAGGACACG 748
Query 860 GGTGACACTTAAAAGAGATGGAGTTGTTCTTGA-CTTGGTACCTCCTCTGACCAAA-GTT 917
|||||||||||||||||||| || |||||||| ||| |||||||| |||| |||| |||
Sbjct 749 AGTGACACTTAAAAGAGATGGTGTCGTTCTTGATCTT-GTACCTCCACTGA-CAAAGGTT 806
Query 918 CACAACCTAATCTTTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAAC 977
|| ||||| ||||| || ||||| |||||||||||||| || || ||| ||||||| |||
Sbjct 807 CATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAAC 866
Query 978 CTGACCACCGGTGACAAAGTTGTGCTTTACTTTCAACCATGTGGCTGGTTCGGATCTGGT 1037
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 867 CTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGATCTGGA 926
Query 1038 CGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGACT 1097
|||||||||||||| || || || ||||| | |||| ||||| ||||| || |||||
Sbjct 927 CGATATGAAGTGGACGGTTACGTGTATAATTCAGCTGAAGAGCCCAAGATGCTAATGACC 986
Query 1098 GGCAAATGGAACGAGTCCATGAGTTATCAGCCGTGTGACG-GTGAAGGTGAACCTCTCCC 1156
|| ||||||||||||||| ||||||||||||| ||||| | | ||||| |||||||| ||
Sbjct 987 GGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCG-GAAGGCGAACCTCTTCC 1045
Query 1157 AGGCACCGAACTGAAAGAGGTATGGAAACTCGCTGATGTTCCAAAGGATGACAAATACCA 1216
||||||||||||||| ||||| ||||| | ||||| | ||||||| | || ||||||||
Sbjct 1046 AGGCACCGAACTGAAGGAGGTGTGGAAGGTTGCTGAAGCTCCAAAGAACGATAAATACCA 1105
Query 1217 ATACACACACTTTGCTCACAAGATCAATAGTTTCGACACTGCCCCGAAAAAGCTGTTGCC 1276
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 1106 ATACACACATTTTGCTCACAAGATCAATAGTTTTGACACTGCCCCTAAAAAGCTACTGTC 1165
Query 1277 GTCTGATTCACGGT-TACGACCTGATAGATACGCACTTGAGATGGGCGACATGTCCAAAT 1335
|||||||||| || |||| |||||||||||||| || |||||||| || ||||||||||
Sbjct 1166 ATCTGATTCAC-GTCTACGTCCTGATAGATACGCGCTGGAGATGGGTGATATGTCCAAAT 1224
Query 1336 CAGGCAAT-GAGAAA-AGCAGCATGGAAGAGAGACAGAGAGCTGAAAAGAGAACCCGCGA 1393
| || | | || ||| |||||| | || || ||||| |||||||| |||| || | | ||
Sbjct 1225 CTGG-ATTCGA-AAAGAGCAGCCTAGAGGATAGACAAAGAGCTGAGAAGAAAAGCAGAGA 1282
Query 1394 AGAGAAAGGCCAAGGCTTTACTCCTAAATGGTTCGATGTAACGGAAGAAGTCACTGCTAC 1453
||||||||||||| ||| |||| |||||||| |||| ||| |||||||||||| ||||
Sbjct 1283 AGAGAAAGGCCAAAAATTTGCTCCAAAATGGTTTGATGAAACAGAAGAAGTCACTCCTAC 1342
Query 1454 ACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGAAAGTACTCGGAGCATCGTGC-AG 1512
||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |
Sbjct 1343 ACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGAAAGTACTCGGTGCACCGCGCCA- 1401
Query 1513 CTGCCGATAACTCTGAAGATAACA-CTGACCCT-AAGTCGATCCAATTCAACCCATGGCA 1570
| || || |||||||| |||| || | || | |||| || |||||||||||| |||||
Sbjct 1402 CAGCTGAAAACTCTGAGGATA-CAACCGATG-TGAAGTTGACCCAATTCAACCCTTGGCA 1459
Query 1571 ATTTCAAGATCTGTCTACTTAA 1592
||| |||||||| ||| |||||
Sbjct 1460 ATTCCAAGATCTCTCTGCTTAA 1481
> AT3G09310.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696);
Has 5781 Blast hits to 5781 proteins in 1903 species:
Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants
- 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink).
| chr3:2860402-2861359 REVERSE LENGTH=795
Length=795
Score = 104 bits (56), Expect = 3e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 1532 TAACACTGACCCTAAGTCGATCCAATTCAACCCATGGCAATTTCAAGATCTGTCTACTTA 1591
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 TAACACCGACCCTAAGTCGATCCAATTCAACCCATGGCAATTCCAAGATCTGTCTACTTA 736
Query 1592 AA 1593
||
Sbjct 735 AA 734
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1693 TTCGTCGTCATAGTTATCTTCTTCTTCTT 1721
|||||||||||||||||||||||||||||
Sbjct 557 TTCGTCGTCATAGTTATCTTCTTCTTCTT 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5