BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478246
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09320.1 | Symbols: | DHHC-type zinc finger family protein ... 2108 0.0
> AT3G09320.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:2861743-2864245 REVERSE LENGTH=1392
Length=1392
Score = 2108 bits (1141), Expect = 0.0
Identities = 1272/1334 (95%), Gaps = 14/1334 (1%)
Strand=Plus/Plus
Query 20 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTCTCGACGCCGGTGCTCC 79
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 64 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTTTCGACGCCGGTGCT-C 122
Query 80 CaaaaaaaaaaTGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 139
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAAAAAAAATATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 182
Query 140 GGTGATCGGTTTCATCTACTTTGCTTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 199
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 183 GGTGATCGGTTTCATCTACTTTGCCTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 242
Query 200 CACTTCATCTCCCGGAATAGCCAACGCCGCCG-TGTTCACCGCTTTGGCTCTGATGTGTG 258
|||||| ||||||||||| || |||||||||| | ||||||||||||||||||||||||
Sbjct 243 CACTTCGTCTCCCGGAATCGCTAACGCCGCCGCT-TTCACCGCTTTGGCTCTGATGTGTA 301
Query 259 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 361
Query 319 CAGATGTTGAAGATCCGGAGAGTCCTGTTCACGAGATTAAGCGCAAGGGAGGAGATTTGA 378
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 362 CGGATGTTGAAGATCCGGAGAGTCCTGTTCATGAGATTAAGCGAAAGGGAGGAGATTTGA 421
Query 379 GATATTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 438
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGTACTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 481
Query 439 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGTGTAGGACACA 498
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 482 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGCGTAGGACACA 541
Query 499 CCAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATACTCCC 558
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 542 CTAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATATTCTC 601
Query 559 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 661
Query 619 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTGAGCATTGCGT 678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 662 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTAAGCATCGCGT 721
Query 679 TAGGTGTTCTTCTCGGGTGGCACATCTACCTCATTTTACAAAACAAAACGACTATCGAGT 738
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 722 TAGGTGTTCTTCTGGGGTGGCACATCTACCTCATTTTACAAAACAAGACGACTATTGAGT 781
Query 739 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 841
Query 799 CATATGACATTGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 858
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CATATGACATCGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 901
Query 859 GGCTCTGTCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 918
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGCTCTGCCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 961
Query 919 CAATCCCT-ACTTCTTCTGAAACAAAACCTTAGCCAAGACCCAAATCATGTATTCCTCTC 977
|||||||| | ||| ||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 962 CAATCCCTGA-TTCATCTGAAACAAAACATTAGCCAAGACCCAAATCATGTATACCTTT- 1019
Query 978 TTACTGGGGAGTTCCATCGAAAAGGCTGCAGATTTTTAACTTCACAGCACTCTGGCTTGT 1037
|| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||| ||
Sbjct 1020 TT-CTGGGGAGTTCCACCGAAAAGGCAGCAGATTTTGAACTTCACAGCACACTGGCTCGT 1078
Query 1038 CCGTTTTCAAGCATTTTAGCCGCCTCAGCTTAAAACCAAGACTAGCCCGTAATCAGTAGT 1097
|| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1079 CCTTTTTCAAGCATTTTAGGCGCCTCAGCTTAAAACCAAGACTGGCCCGTAATCAGTACT 1138
Query 1098 AGACTCTGCTTGACAAGGTTCTCTCTCTCGCATCATTGTTAACTGGATCAAGAGCATCCG 1157
|||||||||||| |||||||||| |||||||||| |||| |||||||| ||||||||||
Sbjct 1139 AGACTCTGCTTGGCAAGGTTCTCCCTCTCGCATCCTTGT-AACTGGATTAAGAGCATCCA 1197
Query 1158 TTTGTGAAAATTATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCACAA 1217
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 TTTGTGAAAAATATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCA-AA 1256
Query 1218 AGGAAAAGGAAGGTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGGTTATTATACAT 1277
| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 A--A---GGAAGTTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGCTTATTATACAT 1311
Query 1278 ACCACTTAACAGGTGAAAAGACATCATTGTAAGATAATTAAAGGCTTTCATATTTTGTTA 1337
||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1312 ACCACTTAACAGGCGAAAAGACATCATTGTACGATAATTTAAGGCTTTCATATTTTGTTA 1371
Query 1338 TCAGAATCAGACAC 1351
||||| ||||||||
Sbjct 1372 TCAGATTCAGACAC 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5