BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478254
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor... 1378 0.0
AT3G09375.1 | Symbols: | pseudogene, putative eukaryotic trans... 1120 0.0
> AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863713-6866593 FORWARD LENGTH=1655
Length=1655
Score = 1378 bits (746), Expect = 0.0
Identities = 992/1109 (89%), Gaps = 24/1109 (2%)
Strand=Plus/Plus
Query 9 GCGAATCCTGGCCGTGGAGACCGTGGGAGAGGTGGTAGG-G-GAGTGGATGACAGACAAG 66
||||||||||||||||||| || | ||||| ||| || | | |||||||| || |||
Sbjct 87 GCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGT-GGAGCTA-TGGATGAC-GATAAG 143
Query 67 TTGGTCTTCAAGACGACCAAAGGGGTCGAGCCCATCGCGAATTTCGAA-GATATGGGTAT 125
||||||||| |||| ||| | || | ||||||||| ||| ||| || |||||||| ||
Sbjct 144 TTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTC-AATGATATGGGCAT 202
Query 126 CAAAG-AGAATGTTCTTCGTGGTTTATACGAGTACGG-TTACGAGAAGCCCTCCGCCATT 183
|| | || |||| ||||| ||| | ||||| || || || ||||||||| ||||| |||
Sbjct 203 TAAGGAAG-ATGTGCTTCGCGGTGTCTACGAATATGGATT-CGAGAAGCCTTCCGCGATT 260
Query 184 CAGCAGAGGGC-GATCATGCCGATTCTCCAAGGGA-GAGATGTCATTGCTCAAGCTCAGT 241
||||||||||| | | ||||||||||| ||| ||| | ||||| ||||||||||||||||
Sbjct 261 CAGCAGAGGGCTG-TTATGCCGATTCTTCAA-GGACGTGATGTTATTGCTCAAGCTCAGT 318
Query 242 CCGGTA-CGGGAAAGACCTCTATGATTGCTCTCTCTGTCTGCCAAGTCGTTGACACTTCT 300
|||||| |||| ||||| ||||||||||||||||| || || ||||||||||| ||||||
Sbjct 319 CCGGTACCGGG-AAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGATACTTCT 377
Query 301 TCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAG 437
Query 361 ATGACGATACAAGCTATTGGATCACACGGCAATGTCCAGGCACATGCATGCATTGGTGGG 420
| |||||||||||||||||||| ||| | |||| | ||||||||||| ||||| ||||||
Sbjct 438 AAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCATCGGTGGG 497
Query 421 AAGAGCGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTCCATGTTGTGTCCGGGACA 480
|| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 498 AATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTCTGGGACA 557
Query 481 CCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTT 617
Query 541 CTGATTCTTGATGAATCAGATGAAATGCTAAGCAGAGGATTCAAGGACCAAATCTATGAT 600
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 618 CTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGATCTATGAT 677
Query 601 GTTTACAGATATCTTCCACCCGATATTCAGGTTTGCTTGGTTTCTGCAACTCTACCTCAC 660
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 678 GTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCTTCCTCAC 737
Query 661 GAGATTTTGGAGATGACAACCAAGTTTATGACGGATCCGGTGAAGATACTTGTGAAGCGT 720
|||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||
Sbjct 738 GAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGTGAAGCGT 797
Query 721 GATGAGTTGGCTCTTGAGGGAATAAAA-AACTTTTTTATTTCTGTTGAGAAAGAGGAGTG 779
||||||||| ||||||| ||||| ||| || |||||| || |||||||||| || |||||
Sbjct 798 GATGAGTTGACTCTTGAAGGAATCAAACAA-TTTTTTGTTGCTGTTGAGAAGGAAGAGTG 856
Query 780 GAAGTTTGAGACACTATGTGATCTTTATGACACACTTACCATCACTCAAGCTGTTATCTT 839
||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 857 GAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGTTATCTT 916
Query 840 CTGCAACACAAAACGAAAAGTGGACTT-TCTTAGTGAGAAAATGAGGAG-CAGCAACTTC 897
|||||| || |||||||| ||||| || |||||||||||||||||| || || |||||||
Sbjct 917 CTGCAATACTAAACGAAAGGTGGA-TTATCTTAGTGAGAAAATGAGAAGTCA-CAACTTC 974
Query 898 ACTGTCTCATCAATGCATGGGGACATGCCTCAGAAGGAGAGAGACGAGATCATGAATCAG 957
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 975 ACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAATGAG 1034
Query 958 TTTCGGACAGGTGAGAGTCGCGTTTTGATCACAACAGATGTATTTGCACGCGGGATTGAT 1017
|||||| ||||||| ||||| |||||||| ||||||||||||| ||||| |||||||||
Sbjct 1035 TTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGATTGAT 1094
Query 1018 GTTCATCAAGTTTCTCTTGTCATCAATTATGATCTCCC-AACAACCGTGAGCTGTACATC 1076
|| || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1095 GTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTACATC 1154
Query 1077 CATCGTATTGGACGGTCTGGTCGTTTCGG 1105
||||||||||| ||||||||||| |||||
Sbjct 1155 CATCGTATTGGGCGGTCTGGTCGATTCGG 1183
Score = 121 bits (65), Expect = 2e-26
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1108 ATTCTCCGGGACATTGAGCAGTACTACAGTACTCAGATTGACGAGATGCCAATGAATGTA 1167
|||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1230 ATTCTCAGAGACATTGAGCAGTACTACAGTACCCAGATTGATGAGATGCCAATGAATGTA 1289
Query 1168 GCTGATCTTATCTAAAA 1184
|||||||||||||||||
Sbjct 1290 GCTGATCTTATCTAAAA 1306
> AT3G09375.1 | Symbols: | pseudogene, putative eukaryotic translation
initiation factor 4A-3 (eIF-4A-3/eIF4A-3), strong similarity
to SP|P41380|IF43_NICPL Eukaryotic initiation factor
4A-3 (eIF-4A-3) (eIF4A-3) {Nicotiana plumbaginifolia}; blastp
match of 84% identity and 4.1e-163 P-value to GP|13957631|gb|AAK50586.1|AC084404_11|AC084404
putative translation initiation
factor {Oryza sativa} | chr3:2882492-2883862 REVERSE
LENGTH=1371
Length=1371
Score = 1120 bits (606), Expect = 0.0
Identities = 673/706 (95%), Gaps = 1/706 (0%)
Strand=Plus/Plus
Query 403 CATGCATGCATTGGTGGGAAGAGCGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTC 462
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 547 CATGCATGCATTGGTGGGAAGAGCCTCGGAGAAGACATAAGGAAGCTGGAGCATGGTGTC 606
Query 463 CATGTTGTGTCCGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGT 522
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 607 CATGTTGTGTCCGGAACACCTGGTCGTGTCTATGACATGATAAAGAGGAGAAGTCTAGGC 666
Query 523 ACCAGAGCTATTAAACTTCTGATTCTTGATGAATCAGATGAAATGCTAAGCAGAGGATTC 582
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 667 ACCAGAGCTATTAACCTTTTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGATTC 726
Query 583 AAGGACCAAATCTATGATGTTTACAGATATCTTCCACCCGATATTCAGGTTTGCTTGGTT 642
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 727 AAGGAACAAATCTATGATGTTTACAGATATCTTCCACCTGATATTCAGGTTTGCTTGGTT 786
Query 643 TCTGCAACTCTACCTCACGAGATTTTGGAGATGACAACCAAGTTTATGACGGATCCGGTG 702
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 TCTGCAACTCTACCTCACGAGATTTTGGAGATGACAAGCAAGTTTATGACGGATCCGGTG 846
Query 703 AAGATACTTGTGAAGCGTGATGAGTTGGCTCTTGAGGGAATAAAAAACTTTTTTATTTCT 762
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 847 AAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAGGGAATTAAAAACTTTTTTATTTCT 906
Query 763 GTTGAGAAAGAGGAGTGGAAGTTTGAGACACTATGTGATCTTTATGACACACTTACCATC 822
|| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||
Sbjct 907 GTAGAGAAAGAGGAGTGGAAATTTGAGACAATATGTGATCTTTACGACACACTTATCATC 966
Query 823 ACTCAAGCTGTTATCTTCTGCAACACAAAACGAAAAGTGGACTTTCTTAGTGAGAAAATG 882
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 967 ACTAAAGCTGTTATCTTCTGCAACACAAAACGAAAAGTGGACTATATTAGTGAGAAAATG 1026
Query 883 AGGAGCAGCAACTTCACTGTCTCATCAATGCATGGGGACATGCCTCAGAAGGAGAGAGAC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGGAGCAGCAACTTCACTGTCTCATCAATGCATGGGGACATGCCTCAGAAGGAGAGAGAC 1086
Query 943 GAGATCATGAATCAGTTTCGGACAGGTGAGAGTCGCGTTTTGATCACAACAGATGTATTT 1002
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1087 GAGATCATGAATCAGTTTCGGACAGGTGAAAGTCGCGTTTTGATCACAACAGATATGTTT 1146
Query 1003 GCACGCGGGATTGATGTTCATCAAGTTTCTCTTGTCATCAATTATGATCTCCC-AACAAC 1061
||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1147 GCACGTGGGATTGATGTGGATCAAGTTTCTCTTGTCATCAATTATGATCTCCCTAACAAC 1206
Query 1062 CGTGAGCTGTACATCCATCGTATTGGACGGTCTGGTCGTTTCGGAC 1107
|||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1207 CGTGAGCTCTACATTCATCGTATTGGACGGTCTGGTCGTTTCGGAC 1252
Score = 361 bits (195), Expect = 1e-98
Identities = 275/311 (88%), Gaps = 16/311 (5%)
Strand=Plus/Plus
Query 1 TTATGGCT-GCGAATCCTGGCCGTGGAGACCGTGGGAGAGGTGGTAGGGGAGTGGATGAC 59
|||||| | |||||||||||||||||||||||| ||||||| || |||| ||
Sbjct 91 TTATGG-TGGCGAATCCTGGCCGTGGAGACCGTAGGAGAGG-CGT-------TGGA--AC 139
Query 60 AGACAAGTTGGTCTTCAAGACGACCAAAGGGGTCGAGCCCATCGCGAATTTCGAAGATAT 119
| | | | | |||| ||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 140 A-A-TGGAT-GACTTCGAGACGACCAAAGGGGTCGATCCCATCGAGAGTTTCGAAGATAT 196
Query 120 GGGTATCAAAGAGAATGTTCTTCGTGGTTTATACGAGTACGGTTACGAGAAGCCCTCCGC 179
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 197 GGGCCTTAAAGAGGATGTTCTTCGTGGTTTATACGAGTACGGTTACGAGAAGCCCTCGGC 256
Query 180 CATTCAGCAGAGGGCGATCATGCCGATTCTCCAAGGGAGAGATGTCATTGCTCAAGCTCA 239
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 257 CATTCAGCAGAGGGCGATCATGCCAATTCTCCAAGGGCGAGATGTTATTGCTCAAGCTCA 316
Query 240 GTCCGGTACGGGAAAGACCTCTATGATTGCTCTCTCTGTCTGCCAAGTCGTTGACACTT- 298
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 317 GTCCGGTACGGGAAAGACCTCTATGATTGCTCTCTCCGTCTGCCAAGTCGTTGACACTTT 376
Query 299 CTTCTAGAGAG 309
| |||||||||
Sbjct 377 CGTCTAGAGAG 387
Score = 111 bits (60), Expect = 1e-23
Identities = 71/76 (93%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 1108 ATTCTCCGGGACATTGAGCAGTACTACAGTACTCAGATTGACGAGATGCCAATGAATGTA 1167
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1297 ATTCTCCGGGACATTGAGCAGTACTACAGTACTCAGATTGACGAGTTGCCAAAGAATATA 1356
Query 1168 GCTGATCTT-ATCTAA 1182
|||||| || ||||||
Sbjct 1357 GCTGAT-TTGATCTAA 1371
Score = 89.8 bits (48), Expect = 6e-17
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 309 GGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTA-CACAAACAGAGATGACG- 366
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 488 GGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTTTCACAAACAGATAAGACGC 547
Query 367 ATACAAGCTATTGG 380
|| || || |||||
Sbjct 548 ATGCATGC-ATTGG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5