BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478259
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09400.1 | Symbols: PLL3 | pol-like 3 | chr3:2891235-2893532... 1236 0.0
AT4G37000.1 | Symbols: ACD2, ATRCCR | accelerated cell death 2 ... 58.4 3e-07
> AT3G09400.1 | Symbols: PLL3 | pol-like 3 | chr3:2891235-2893532
REVERSE LENGTH=1953
Length=1953
Score = 1236 bits (669), Expect = 0.0
Identities = 779/833 (94%), Gaps = 4/833 (0%)
Strand=Plus/Plus
Query 1138 ATTGACAACAAAGACGTTCTTAGAGCTCTTCAGCAAGCGTTGAAGAAAACAGAGGAATCG 1197
||| || ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 1123 ATTAACCACAAAGACGTTCTTAGAGCTCTTCAACAAGCGTTGGAGAAAACAGAAGAATCG 1182
Query 1198 TTTGATCTGATGGTTAGTGAGAATCCAGAATTAGCCTTGATGGGATCTTGCGTTCTTGTG 1257
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1183 TTTGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTG 1242
Query 1258 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTT-TT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1243 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT 1302
Query 1317 AGCTAGAAGACCGGATCTTGGGATGAA-GAAAATGCAAAAGGACCTTGAGAGAATCAAAG 1375
||| ||||||| || | | || || ||| ||||||||||| ||||||||| ||||||
Sbjct 1303 -GCTCGAAGACCTAATGTCGAGAA-AATGAAGATGCAAAAGGAGCTTGAGAGAGTCAAAG 1360
Query 1376 AAGAGAGTCCATTAGAGACATTGTTCGTCACAGAAAGAGGATTGAGTCTTTTGGTTCCTA 1435
|||| |||||||||||||| |||||| |||| ||||||||| |||||||| |||| |||
Sbjct 1361 AAGAAAGTCCATTAGAGACCTTGTTCATCACCGAAAGAGGACTGAGTCTTCTGGTCCCTG 1420
Query 1436 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGATGAGGAAGTGACAAGAATCAAGAAGG 1495
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1421 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGAGAAGAATCAAGAAGG 1480
Query 1496 AACATCCTGATGATGCATTGGCAATAGAGAATGATAGAGTAAAAGGTTATCTCAAGGTCA 1555
|||||||||||||| ||| || ||||||||| ||||||| |||||||||||||| ||||
Sbjct 1481 AACATCCTGATGATATATTAGCGATAGAGAATAATAGAGTGAAAGGTTATCTCAAAGTCA 1540
Query 1556 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTCGAGA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1541 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTAGAGA 1600
Query 1616 TGTTTAGAATAGACTACGTCGGAACATCACCGTACATCACGTGCTCTCCGTCGCTACACC 1675
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1601 TGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGTGCTCTCCGTCGCTACACC 1660
Query 1676 ACCACAGACTCACATCACGTGACAAATTTCTCATCCTCTCCTCCGACGGATTATACGAAT 1735
|||| |||||| |||||||||||||||| || |||||||| ||||| ||| |||||||||
Sbjct 1661 ACCATAGACTCTCATCACGTGACAAATTCCTAATCCTCTCATCCGATGGACTATACGAAT 1720
Query 1736 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTCGACTCATTCATATCAGCCTTCCCTGAAG 1795
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1721 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTCATCTCAGCCTTCCCTGAAG 1780
Query 1796 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCCGCCAAGAAATATGGCA 1855
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1781 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCTGCCAAGAAATATGGTA 1840
Query 1856 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGCCGGAGGTATCATGATGATG 1915
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1841 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGTCGGAGGTATCATGACGATG 1900
Query 1916 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1968
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1953
Score = 1170 bits (633), Expect = 0.0
Identities = 982/1143 (86%), Gaps = 53/1143 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAACAGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAAAAATT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGAAATGGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAGAAATT 60
Query 61 TCCAGTCGAAACGAT-GTTGGAGTCGGACTGATTCAAGAAAACCTCGGCCACTCTTTCTG 119
||| ||||| ||| | ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 TCCGGTCGATACG-TAACCGGAGTAGGACTGGTTCAAGAAAACCTCGGCCACTCTTTCTG 119
Query 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCG 179
Query 180 ACCGGACCCGATACCCGGAACCACCACCACTTTTCGTTCAATCTCCGGCGCCTCCGTTAG 239
||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 180 ACCCGACCCGATACCCGGAACCACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTTAG 239
Query 240 CGCCAATACTTCAACGGCGCTTTCAGCTTCT-TCGTCAACAGACGCGTCTGGATTAGCCT 298
||||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| ||||||
Sbjct 240 CGCCAATACTTCAACCGCGCTCTCAACTTCTCT-GTCAACAGATACGTCTGGAATAGCCT 298
Query 299 CTGCGTTCGAGAGCTCCAATAGATTCGCCTCCTTGCCACTCCAGCCTGTGCCACGCGGTC 358
| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 299 CCGCGTTCGAGAGTTCCAATAGATTCGCTTCCTTGCCTCTCCAGCCTGTACCACGTAGTC 358
Query 359 CGATaaaaaaaCCGGTTCACGTGTCGGGTCAATTCGAACGCCGGTTCTTATCCGGTCCGA 418
| || || ||| ||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 359 CTATTAAGAAATCGGATCACGGGTCGGGTCTATTCGAACGCCGGTTCTTATCCGGTCCGA 418
Query 419 TCGAAAGCGGGTTGGTTTCAGGGAAGAAGAAGAAGGAGAAAGCAAAACTGAAGAAAAGTG 478
| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TTGAAAGCGGTTTGGTTTCAGGGAAGAAGACCAAGGAGAAAGCAAAACTGAAGAAAAGTG 478
Query 479 GAAGCAAATCATTTACGATACCAAAACCT-AACAATAAATTTCTTACATTCAAAAACGTT 537
|||||||||| ||||||| |||||||| | || || || | | | ||||| | ||
Sbjct 479 GAAGCAAATCCTTTACGAAACCAAAAC-TGAAGAA-AAGTGA---A-AG-CAAAATCTTT 531
Query 538 ---TTCACGAATCTGGTATCTAACAACTTATCTTGTTCGAAGAAGAGCGTGATCGAA-CC 593
|||| || | | | || | |||||||||||||||||||||||| ||||| || ||
Sbjct 532 ACATTCAAAAA-C-GTTTTC-ACCAACTTATCTTGTTCGAAGAAGAGTGTGATT-AAGCC 587
Query 594 GATCAACTATTCCGATTCATTTGACGAATCATCAGATTCCGATCAAGGTAGA--CCTGAG 651
|||||| || ||||||||| || | |||||||||| | |||| | || | ||||||
Sbjct 588 AATCAACGGTTTCGATTCATTCGATGGATCATCAGATACTGATC--GTTACATACCTGAG 645
Query 652 AACAATTACTCAGGCACGATTCTAAGCAGCCACGAGAACCCTAAAACC---GAAGAAGAA 708
| ||| | || | |||||||| | |||||||| ||||| |||| || | |||||||||
Sbjct 646 ATCAACTCCTTAAGCACGATTGTGAGCAGCCATGAGAAACCTAGAATCAAAGAAGAAGAA 705
Query 709 -A-AA-ACTGAGTCTGCTTTAGATGAGCCAAAGATTCAATGGGCGCAGGGGAAAGCAGGG 765
| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 706 GATAAGACTGAGTCTGCTTTAGAGGAGCCAAAGATACAATGGGCACAGGGGAAAGCAGGT 765
Query 766 GAAGATCGAGTTCACGTCATCCTCTCGGAAGAAAACGGTTGGCTTTTCGTCGGGATATAC 825
||||||||||| |||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 766 GAAGATCGAGTACACGTCATCCTCTCCGAGGAAAACGGTTGGCTTTTCGTCGGAATTTAC 825
Query 826 GACGGATTCAACGGTCCTGATGCGCCGGATTATCTTCTCAACAATCTCTACACCGCTGTG 885
|||||||||| |||||| ||| | |||||||||||| |||| ||||||||||| || |||
Sbjct 826 GACGGATTCAGCGGTCCAGATCCACCGGATTATCTTATCAAAAATCTCTACACTGCCGTG 885
Query 886 CTCGGAGAGCTCAAAGAGTTGCAATGGAACGACAA-G-T-A-TGA-AT--------C--C 930
||| |||||||||||| ||| | ||||| |||||| | | | | | || | |
Sbjct 886 CTCAGAGAGCTCAAAGGGTTACTATGGATCGACAAAGGTGAATCATATAATAGAAACGGC 945
Query 931 GAAT--ATC-T--ACAAA-AGAGTTCGGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 984
|| | | | | | ||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 946 GAGTCCAACATCGAGAAACAGAGTACAGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 1005
Query 985 TGCCATGCGATGAATGGAAAC-ATTGTTGCTTGTGGATCAAGAAACATAACGAGTGACGT 1043
|||| || ||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1006 TGCCCTGTGATGAATGGAAACGAT-GTTGCTTGTGGATCAAGAAACATTACGAGTGACGT 1064
Query 1044 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1124
Query 1104 TAA 1106
|||
Sbjct 1125 TAA 1127
> AT4G37000.1 | Symbols: ACD2, ATRCCR | accelerated cell death
2 (ACD2) | chr4:17442612-17443855 FORWARD LENGTH=1068
Length=1068
Score = 58.4 bits (31), Expect = 3e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Minus
Query 1234 TTGATGG-GATCTTGCGTTCTTGTGACATTGATGAAAG 1270
||||||| |||||||||||||||||||||||||||||
Sbjct 1065 TTGATGGTCATCTTGCGTTCTTGTGACATTGATGAAAG 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97489458390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5