BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478260
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09405.1 | Symbols: | Pectinacetylesterase family protein |... 1079 0.0
AT3G09410.1 | Symbols: | Pectinacetylesterase family protein |... 732 0.0
> AT3G09405.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2894812-2897674 REVERSE LENGTH=1735
Length=1735
Score = 1079 bits (584), Expect = 0.0
Identities = 673/717 (94%), Gaps = 2/717 (0%)
Strand=Plus/Plus
Query 407 AGCTCATTTGGGAGACAATTATGGATGAATTGTTGTCGATGGGCATGTCACATGCGAAAC 466
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGCTCATTTGGGAGGCTATCATGGATGAATTGTTGTCGATGGGCATGTCACATGCGAAAC 882
Query 467 ATGCAATTCTCACAGGATGTTCTGCAGGTGGCTTGGCTACTCTTATACATTGTGACTACT 526
||| || ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 883 GTGCCATGCTCACAGGATGTTCTGCTGGTGGCTTGTCTACTCTAATACATTGTGACTACT 942
Query 527 TTCGAGACCATCTGCCTAACGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTATATTC 586
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTCGAGACCATCTGCCTAAAGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTATATTC 1002
Query 587 TCAACT-TGCCTGATGTGCTTGGAAACCCAACAATGGGATCTTTCTTTCATGATGTTGTT 645
| || | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TTAA-TGTGCTTGATGTCCTTGGAAACCCAACAATGGGATCTTTCTTTCATGATGTTGTT 1061
Query 646 ACCCTGCAGCGCGTAGATAGGAGCTTGGATCAGAATTGTGTAGCCAAAATGGAACCATCT 705
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1062 ACCCTGCAGAGCGTAGATAAGAGCTTGGATCAGAATTGTGTTGCCAAAATGGAACCATCT 1121
Query 706 AAGTGTCTGTTTCCTCAAGAATCGCTTAAAAACATAAGAACTCCGGTATTTCTTGTCAAC 765
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1122 AAGTGTATGTTTCCTCAAGAATCTCTTAAAAACATAAGAACTCCGGTATTTCTTGTCAAC 1181
Query 766 ACAGCCTACGATTATTGGCAAATTCAAAATGGACTGGTACCAGAGTCTCCGAATTTAGAT 825
|||||||||||||||||||| |||||||| || ||||||||||| |||||| || |||||
Sbjct 1182 ACAGCCTACGATTATTGGCAGATTCAAAACGGCCTGGTACCAGATTCTCCGGATCTAGAT 1241
Query 826 GAAAGATGGGCGATTTGTAGACTCAATATTCAGGAATGTGATGCCGCACAAATGAAAGTT 885
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GAAAGATGGAAAATTTGTAGACTCAATATTCAGGAATGTGATGCCGCACAAATGAAAGTT 1301
Query 886 CTACATGGTTTTCGGAATTCCCTGATCGATGCGATCGGAGAATTTCATGAGGACAAAGAG 945
|| |||||||| || | |||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1302 CTGCATGGTTTCCGCAGTTCCCTGATCGATGCGATAGGAGAATTTCATGTGAACAAAGAG 1361
Query 946 GGTGGGATGTTTATAAATTCGTGCAATTCTCATTGCCAGATAAGAGAGTCATGGCACTCC 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1362 GGTGGGATGTTTATAAATTCGTGCAATTCTCATTGCCAGATAAGAGAGTCATGGCATTCC 1421
Query 1006 CCAACCTCAACAAGAATCGAAAATAAGACGATCGCAGAGTCTGTAGGTGATTGGTACTAC 1065
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1422 GCAACCTCAACAAGAATCGAAAATAAGACGATTGCAGAGTCTGTAGGTGATTGGTACTTC 1481
Query 1066 AACCGAAAACCAGTGAAGCTAATCGATTGTCCATACCCGTGCAATACCTCTTGTTGA 1122
||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1482 AACCGAAAACCGGTGAAGCTAATCGATTGTCCTTATCCGTGCAATGCCTCTTGTTGA 1538
Score = 346 bits (187), Expect = 3e-94
Identities = 203/211 (96%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 198 GGGTGGAGGCGGGTGCCGTACAATTGAGTCATGTTCTTCTAGAGCAATGACTAGGTTAGG 257
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 584 GGGTGGAGGCGGGTGCCGTACAATTGAGTCATGTTCTGCTAGAGCAATGACTAGGTTAGG 643
Query 258 TTCTTCCAACTTCTTTGAACATGAAGTTCCCTTTCAAGGCGTTTTAAGCAGTGACCCATC 317
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 644 TTCTTCCAACTTCTTTGAACATGAAGTGCCTTTTTTTGGCGTTTTAAGCAGTGACCCATC 703
Query 318 TCAAAATCCTGACTTCTTTAACTGGAACAGAGTTATGATTCGGTACTGTGATGGTGCTTG 377
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 704 TCAAAACCCTGACTTCTTTAACTGGAACAGAGTTATGATACGGTACTGTGATGGTGCTTG 763
Query 378 TTTTTCTGGACACCCTGAAGCTGAATTCAAG 408
|||||||||||||||||||||||||||||||
Sbjct 764 TTTTTCTGGACACCCTGAAGCTGAATTCAAG 794
Score = 191 bits (103), Expect = 1e-47
Identities = 127/138 (92%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATTCACTCTCTGCTACAATGCAGAACATGGTCTAAGAGTGACTGGCTTATCGCT 60
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 309 ATGGTGATTCGCTCTCTGCTACAATGCAGAACATGGTCTAAGAGTGACTGGCTTCTCGCT 368
Query 61 TCAATCGGAATAGTCTTGAT-GTGTT-TTCCTTTTCTTTCTCTTTCGATTCGACTTCAGA 118
|||||||||||||||||||| || || |||||||||||| || ||| |||| ||||||||
Sbjct 369 TCAATCGGAATAGTCTTGATCGT-TTATTCCTTTTCTTTGTCCTTCAATTCAACTTCAGA 427
Query 119 CTCTATCCCCTCCATTGA 136
||||||||||||| ||||
Sbjct 428 CTCTATCCCCTCCGTTGA 445
> AT3G09410.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2897638-2901019 REVERSE LENGTH=1740
Length=1740
Score = 732 bits (396), Expect = 0.0
Identities = 623/730 (85%), Gaps = 26/730 (4%)
Strand=Plus/Plus
Query 407 AGCTCATTTGGGAGACAATTATGGATGAA-TTGTTGTCGATGGGCATGTCACATGCGAAA 465
|||| ||||||||| | ||||| |||||| || ||||| |||||||||||| |||| |||
Sbjct 580 AGCTTATTTGGGAGGCTATTATTGATGAACTT-TTGTCAATGGGCATGTCAGATGCCAAA 638
Query 466 CATGCAATTCTCACAGGATGTTCTGCAGGTGGCTTGGCTACTCTTATACATTGTGACTAC 525
|| || || || |||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 639 CAGGCCATACTTACAGGATGTTCTGCCGGTGGCTTGGCAAGTCTTATACATTGTGACTAC 698
Query 526 TTTCGAGACCATCTGCCTAACGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTA-TAT 584
|||||||| ||||| || || |||||| |||| ||||||||||| ||||||||||| | |
Sbjct 699 TTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGATGGAGGCTACT-T 757
Query 585 TCTCAACTTGCCTGATGTGCTTGGAAACCCAACAATG-GGATCTTTCTTTCATGATGTTG 643
||||||| |||||||||| |||||||||||||||||| || ||||||| |||||||||||
Sbjct 758 TCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGG-TCTTTCTATCATGATGTTG 816
Query 644 TTACCCTGCAGCGCGTAGATAGGAGCTTGGATCAGAATTGTGTAGCCAAAATGGAACCAT 703
||| ||||| ||||||| | ||||||||||||||| ||||||||||||| ||| ||||
Sbjct 817 TTAATTTGCAGGGCGTAGAGAAGAGCTTGGATCAGAAATGTGTAGCCAAAACGGAGCCAT 876
Query 704 CTAAGTGTCTGTTTCCTCAAGAA-TCGCTTAAAAACATAAGAACTCCGGTATTTCTTGTC 762
|||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 877 CTAAGTGTATGTTTCCTCAAGAATTC-CTGAAAAACATAAGAACTCCGGTATTTCTTGTC 935
Query 763 AA-CACAGCCTACGATTATTGGCAAATTCAAAATGGACT-GGTACCAGAGT-CTCCGAAT 819
|| | |||||||||||| |||||| |||||| ||| || ||||||| | | || || ||
Sbjct 936 AATC-CAGCCTACGATTTTTGGCAGATTCAACATGT-CTTGGTACCA-ACTTCTGCGGAT 992
Query 820 TTAGATGAAAGATGGGCGATTTGTAGACTCAATATTCAGGAATGTGATGCCGCACAAATG 879
|||| |||| ||||| | || |||||||||||| ||||||||||||||| ||| ||
Sbjct 993 CCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGAACAGATT 1052
Query 880 AAAGTTCTACATGGTTTTCGGAATTCCCTGATCGA-TGCGATCGGAGAATTTCATGAGGA 938
||||||||||| |||||||| | ||| |||| || ||| || || ||||||||| || |
Sbjct 1053 AAAGTTCTACACGGTTTTCGCAGTTCTATGAT-GACTGCAATTGGGGAATTTCATCAGAA 1111
Query 939 CAAAGAGGGTGGGATGTTTATAAATTCGTGCAATTCTCATTGCCAGATAAG--A-GA--G 993
|||||| ||||||||||| ||| |||| ||| || |||||||||||| | | | | |
Sbjct 1112 CAAAGATGGTGGGATGTTCATAGATTCCTGCTATGCTCATTGCCAGACA-GTCATGTCCG 1170
Query 994 T--CATGGCACTCCCCAACCTCAACAAGAATCGAAAATAAGACGATCGCAGAGTCTGTAG 1051
| |||||||||||| |||||| ||||||||||||||||||| || |||||||||||||
Sbjct 1171 TGACATGGCACTCCCTGACCTCACCAAGAATCGAAAATAAGACAATTGCAGAGTCTGTAG 1230
Query 1052 GTGATTGGTACTACAACCGAAAACCAGTGAAGCTAATCGATTGTCCATACCCGTGCAATA 1111
|||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1231 GTGACTGGTACTTCAACAGAAAACCGGTGAAGCTAATCGATTGTCCATACCCGTGCAAT- 1289
Query 1112 CCT-CTTGTT 1120
||| ||||||
Sbjct 1290 CCTTCTTGTT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5