BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478262
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09410.1 | Symbols: | Pectinacetylesterase family protein |... 2259 0.0
AT3G09405.1 | Symbols: | Pectinacetylesterase family protein |... 1251 0.0
> AT3G09410.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2897638-2901019 REVERSE LENGTH=1740
Length=1740
Score = 2259 bits (1223), Expect = 0.0
Identities = 1344/1403 (96%), Gaps = 6/1403 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCAATGGCGATTCCAAGGTTTAGCTCTCTGTTACGGTGTAGAAAATGGGCTAAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TCTTCTTCAATGGCGATTCCAAGGTTTAGCTCTCTGTTACGGTGTAGAAAATGGGCTAAA 86
Query 61 AGTGACTGGCTTGTCGCTTCTATCGGATTCGTATTGATCGTGTTTTTCCTCTCTTTCTTC 120
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 87 AGTGACTGGCTTGTCGCTTCTATAGGATGCGTATTGATCGTTTTTTTCCTCTCTTTCTTC 146
Query 121 ATCGATCCCACTTCAGACTCTGTCCCCTCCGTTGACCGATCTCGGCCAATCATATTC-CC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 147 TTCGATCCCACTTCAGACTCTGTCCCCTCCGTTGACCGATCTCGGCCAATCATA-TCTCC 205
Query 180 TAGCGATCTGGTCAAACTGAAGTTGTCGAGTATAGCTAAAGAGAGAGGAGCTTTTTGTTT 239
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 206 TAGCGATCTGGTCAAGCTGAAGTTGTCGAGTGTAGCTAAAGAGAGAGGAGCTTTTTGTTT 265
Query 240 GGATGGAAGCTTGCCTGGGTACCATTTTCATGAGGGTTCTGGATCTGGCTCCCAAAGCTG 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 GGATGGAAGCTTGCCTGGGTACCACTTTCATGAGGGTTCTGGATCTGGCTCCCAAAGCTG 325
Query 300 GCTTGTTCATTTGGAGGGTGGAGGCTGGTGCAACACAGCTGCGTCATGTTCTGCTCGAGC 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 326 GCTTGTTCATTTGGAGGGTGGAGGCTGGTGCAACACAGTTGCGTCATGTTCTGCTCGAGC 385
Query 360 ATTGACTAAATTAGGTTCTTCCAACTACTTTGAACAAGAAGTGGCCTTTCAAGGTGTTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 ATTGACTAAATTAGGTTCTTCCAACTACTTTGAACAAGAAGTGGCCTTTCAAGGTGTTTT 445
Query 420 AAGCAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAGGTTGCGATAAGGTA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 AAGTAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAGGTTGCGATAAGGTA 505
Query 480 CTGTGATGGTGCTTCTTTTGCTGGACACCCTGAAGCTGAATTCAAGAATGAAACACGGCT 539
||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 506 CTGTGATGGTGCTTCTTTTTCTGGACGCCCTGAAGCTGAATTCAAGAATGGCACACGGCT 565
Query 540 TTTCTTCCGGGGTCAGCTCATTTGGGAGGCTATTATTGATGAACTGTTGTCGATGGGCAT 599
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 566 TTTCTTCCGGGGCCAGCTTATTTGGGAGGCTATTATTGATGAACTTTTGTCAATGGGCAT 625
Query 600 GTCAGATGCGAAACAGGCCATACTTACAGGATGTTCTGCTGGTGGCTTGGCAAGTCTTAT 659
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 626 GTCAGATGCCAAACAGGCCATACTTACAGGATGTTCTGCCGGTGGCTTGGCAAGTCTTAT 685
Query 660 ACATTGTGACTACTTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 ACATTGTGACTACTTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGA 745
Query 720 TGGAGGCTACTTTCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGGTCTTTCTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TGGAGGCTACTTTCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGGTCTTTCTA 805
Query 780 TCATGATGTTGTTAATTTGCAGGGTGTAGATAAGAGCTTGGATCAGAAATGTGAAGCCAA 839
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 806 TCATGATGTTGTTAATTTGCAGGGCGTAGAGAAGAGCTTGGATCAGAAATGTGTAGCCAA 865
Query 840 AACAGAGCCATCTAAGTGTATGTTTCCTCAAGAATTCATTAAAAACATAAGAACTCCAGT 899
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 866 AACGGAGCCATCTAAGTGTATGTTTCCTCAAGAATTCCTGAAAAACATAAGAACTCCGGT 925
Query 900 ATTTCTTGTGAACCCAGCCTACGATTTTTGGCAGATTCAAAATGTCTTGGTACCAATTTC 959
||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 926 ATTTCTTGTCAATCCAGCCTACGATTTTTGGCAGATTCAACATGTCTTGGTACCAACTTC 985
Query 960 TGCGGATCCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGCGGATCCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGA 1045
Query 1020 ACAGATGAAAGTTCTACACGGTTTTCGCAGTTCTATGATGGA-TGCGATTGGGGAATTTC 1078
|||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1046 ACAGATTAAAGTTCTACACGGTTTTCGCAGTTCTATGATG-ACTGCAATTGGGGAATTTC 1104
Query 1079 ATCAGAACAAAGATGGTGGCATGTTCATAGATTCCTGCTATGCTCATTGCCAGACAGTCA 1138
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ATCAGAACAAAGATGGTGGGATGTTCATAGATTCCTGCTATGCTCATTGCCAGACAGTCA 1164
Query 1139 TGTCAGTGACATGGCACTCCCCAACCTCACCAAGAATCGAAAATAAGACAATCGCAGAAT 1198
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1165 TGTCCGTGACATGGCACTCCCTGACCTCACCAAGAATCGAAAATAAGACAATTGCAGAGT 1224
Query 1199 CTGTAGGTGACTGGTACTTCAACCGAAAACCGGTGAAGCTAATCGATTGTCCTTACCCAT 1258
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 1225 CTGTAGGTGACTGGTACTTCAACAGAAAACCGGTGAAGCTAATCGATTGTCCATACCCGT 1284
Query 1259 GCAATCCTTCTTGTTACAACATGAATTTCACCTGAAGTTGCCTTATACTC-TCATTTTAC 1317
||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||
Sbjct 1285 GCAATCCTTCTTGTTACAACATGAATTTCACATGAACTTGCCTTATA-TCCTCATTTTAC 1343
Query 1318 CAATCCCTCTGCTTGTGGACTTTTTCGATTCTCCAGAAGCTTATTCATCGAGGGAGCAGT 1377
|| | ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 1344 CACTTCCTCTGCTTGTGGACTTTTTCGATTCTCCAGAAGCTTCTTCAGCAAGGGAGCAGT 1403
Query 1378 CGTTTCCTCAAAATCCTCAATCC 1400
| ||||||||||| ||||||||
Sbjct 1404 CACTTCCTCAAAATTCTCAATCC 1426
> AT3G09405.1 | Symbols: | Pectinacetylesterase family protein
| chr3:2894812-2897674 REVERSE LENGTH=1735
Length=1735
Score = 1251 bits (677), Expect = 0.0
Identities = 1081/1270 (85%), Gaps = 52/1270 (4%)
Strand=Plus/Plus
Query 29 GCTCTCTGTTACGGTGTAGAAAATGGGCTAAGAGTGACTGGCTTGTCGCTTCTATCGGAT 88
|||||||| ||| || |||| |||| ||||||||||||||||| ||||||| ||||||
Sbjct 319 GCTCTCTGCTACAATGCAGAACATGGTCTAAGAGTGACTGGCTTCTCGCTTCAATCGGAA 378
Query 89 TCGTATTGATCGTGTTTTTCC-TCTCTTTCTTCATCGATCCCACTTCAGACTCTGTCCCC 147
| || |||||||| || |||| | ||||| | | || || | |||||||||||| |||||
Sbjct 379 TAGTCTTGATCGT-TTATTCCTTTTCTTTGTCCTTCAATTCAACTTCAGACTCTATCCCC 437
Query 148 TCCGTTGACCGATCTCGGCCAATCATATTCCCTAGCGATCTGGTCAAACTGAAGTTGTCG 207
|||||| || | | | ||||||||| || ||||||||| |||||
Sbjct 438 TCCGTT----GA-C-C-G--------------TAGCGATCTAGTTAAACTGAAGCTGTCG 476
Query 208 AGTATAGCTAAAGAGAGAGGAGCTTTTTGTTTGGATGGAAGCTTGCCTGGGTACCATTTT 267
|||| |||||||||||||||||||||||| || ||||||||||| ||||| || || |||
Sbjct 477 AGTAAAGCTAAAGAGAGAGGAGCTTTTTGCTTAGATGGAAGCTTACCTGGTTATCACTTT 536
Query 268 CATGAGGGTTCTGGATCTGGCTCCCAA-AGCTGGCTTGTTCATTTGGAGGGTGGAGGCTG 326
||| ||||||| |||||||||| |||| ||||||||| || |||| |||||||||||| |
Sbjct 537 CATAAGGGTTCAGGATCTGGCT-CCAATAGCTGGCTTCTTTATTTAGAGGGTGGAGGCGG 595
Query 327 GTGCAACACAGCTGCGTCATGTTCTGCTCGAGCATTGACTAAATTAGGTTCTTCCAACTA 386
|||| ||| || ||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 596 GTGCCGTACAATTGAGTCATGTTCTGCTAGAGCAATGACTAGGTTAGGTTCTTCCAACTT 655
Query 387 CTTTGAACAAGAAGTGGCC-TTTCAAGGTGTTTTAAGCAGTGACCCATCTCAAAATCCTG 445
||||||||| ||||| ||| ||| || |||||||||||||||||||||||||| ||||
Sbjct 656 CTTTGAACATGAAGT-GCCTTTTTTTGGCGTTTTAAGCAGTGACCCATCTCAAAACCCTG 714
Query 446 AATTCTTTAACTGGAACAAG-GTTGCGATAAGGTACTGTGATGGTGCTTCTTTTGCTGGA 504
| ||||||||||||||| || ||| |||| |||||||||||||||||| |||| |||||
Sbjct 715 ACTTCTTTAACTGGAAC-AGAGTTATGATACGGTACTGTGATGGTGCTTGTTTTTCTGGA 773
Query 505 CACCCTGAAGCTGAATTCAAGAATGAAACACGGCTTTTCTTCCGGGGTCAGCTCATTTGG 564
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 774 CACCCTGAAGCTGAATTCAAGAATGAAACACGGCTTTTCTTCCGCGGCCAGCTCATTTGG 833
Query 565 GAGGCTATTATTGATGAACTGTTGTCGATGGGCATGTCAGATGCGAAACAG-GCCATACT 623
|||||||| || |||||| |||||||||||||||||||| ||||||||| | ||||| ||
Sbjct 834 GAGGCTATCATGGATGAATTGTTGTCGATGGGCATGTCACATGCGAAAC-GTGCCATGCT 892
Query 624 TACAGGATGTTCTGCTGGTGGCTTGGCAAGTCTTATACATTGTGACTACTTTCGAGATCA 683
|||||||||||||||||||||||| | | ||| ||||||||||||||||||||||| ||
Sbjct 893 CACAGGATGTTCTGCTGGTGGCTTGTCTACTCTAATACATTGTGACTACTTTCGAGACCA 952
Query 684 TCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGATGGAGGCTACT-TTCTCAACGTGC 742
||| || ||||||||| |||| ||||||||||| ||||||||||| | |||| || ||||
Sbjct 953 TCTGCCTAAAGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTA-TATTCTTAATGTGC 1011
Query 743 CTGATGTCCTTGGAAACCCAACAATGAGG-TCTTTCTATCATGATGTTGTTAATTTGCAG 801
||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||
Sbjct 1012 TTGATGTCCTTGGAAACCCAACAATG-GGATCTTTCTTTCATGATGTTGTTACCCTGCAG 1070
Query 802 GGTGTAGATAAGAGCTTGGATCAGAAATGTGAAGCCAAAACAGAGCCATCTAAGTGTATG 861
| ||||||||||||||||||||||| |||| ||||||| || |||||||||||||||
Sbjct 1071 AGCGTAGATAAGAGCTTGGATCAGAATTGTGTTGCCAAAATGGAACCATCTAAGTGTATG 1130
Query 862 TTTCCTCAAGAAT-TCATTAAAAACATAAGAACTCCAGTATTTCTTGTGAACCCAGCCTA 920
||||||||||||| || ||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 1131 TTTCCTCAAGAATCTC-TTAAAAACATAAGAACTCCGGTATTTCTTGTCAACACAGCCTA 1189
Query 921 CGATTTTTGGCAGATTCAAAATGTCTTGGTACCA-ATTTCTGCGGATCCAGATAAAAGTT 979
||||| ||||||||||||||| | | |||||||| ||| || |||||| |||| |||| |
Sbjct 1190 CGATTATTGGCAGATTCAAAACGGCCTGGTACCAGATT-CTCCGGATCTAGATGAAAGAT 1248
Query 980 GGGCAAAGT-GCAGACTCAATATTAAGGAATGTGATGCCGCACAGATGAAAGTTCTACAC 1038
|| ||| | | |||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1249 GGA-AAATTTGTAGACTCAATATTCAGGAATGTGATGCCGCACAAATGAAAGTTCTGCAT 1307
Query 1039 GGTTTTCGCAGTTCTATGATGGATGCGATTGGGGAATTTCATCAGAACAAAGATGGTGGC 1098
||||| |||||||| |||| |||||||| || ||||||||| ||||||||| |||||
Sbjct 1308 GGTTTCCGCAGTTCCCTGATCGATGCGATAGGAGAATTTCATGTGAACAAAGAGGGTGGG 1367
Query 1099 ATGTTCATAGATTCCTGCTATGCTCATTGCCAGACA-GTCATGTCAGTGACATGGCACTC 1157
||||| ||| |||| ||| || |||||||||||| | | | | ||| ||||||| ||
Sbjct 1368 ATGTTTATAAATTCGTGCAATTCTCATTGCCAGATAAG--A-G--AGT--CATGGCATTC 1420
Query 1158 CCCAACCTCACCAAGAATCGAAAATAAGACAATCGCAGAATCTGTAGGTGACTGGTACTT 1217
| |||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 1421 CGCAACCTCAACAAGAATCGAAAATAAGACGATTGCAGAGTCTGTAGGTGATTGGTACTT 1480
Query 1218 CAACCGAAAACCGGTGAAGCTAATCGATTGTCCTTACCCATGCAAT-CCTTCTTGTTACA 1276
|||||||||||||||||||||||||||||||||||| || |||||| ||| |||||| |
Sbjct 1481 CAACCGAAAACCGGTGAAGCTAATCGATTGTCCTTATCCGTGCAATGCCT-CTTGTTG-A 1538
Query 1277 ACATGAATTT 1286
||||| ||||
Sbjct 1539 ACATGGATTT 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5