BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478263
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09430.1 | Symbols: | unknown protein; Has 17 Blast hits to... 1439 0.0
> AT3G09430.1 | Symbols: | unknown protein; Has 17 Blast hits
to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:2901280-2903072 FORWARD LENGTH=1085
Length=1085
Score = 1439 bits (779), Expect = 0.0
Identities = 926/994 (93%), Gaps = 21/994 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCATCGTCACGATCGCTGGTTTCTTCCTATACCTTTGATGATAAAGACCTA 60
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCGTCGTCATCGTCACGATCTCTGGTTTCTTCCTACACCTTTGATGAGAAAGACCTA 60
Query 61 GAAGACGCTGATTTATGGGCGGTCATTGATTCCGCCGCTGCTGCAGCTACTATCGCCGGC 120
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 GACGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGC 120
Query 121 AAATCTCCGAAA-CCCTTAGCTATTAGGTATCCAAATTACAATTCTCCTCCTACGCCTGT 179
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AAATCTCCGAAACCCCTT-GCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
Query 180 TTCGTATCCTTCTCCACAGTCGAAGGTTCTTCAGATCCAGAATCGTGACCCTAATCTTGG 239
|||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 180 TTCGTATCCTTCTCCACAGTCGAAAATTCTTCAGATCCCCAATCGTAACCCTAATCTTGG 239
Query 240 CCGGCGG-TTGAATGAAGAGTCTACGCGTCCGAACAAAATGGCCAGATCTCGCGTCTTGT 298
|| | || ||||| || ||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct 240 CC-GAGGATTGAACGAGGAGTCTAATCGTCCGAGCAAAATGGCCAGATCTCGCATCTTGT 298
Query 299 CTGAGGTGAAGAGTGAGAGTCCGATGGCTCTTGTTACGACGTCGCACCGAAATTTAACCC 358
|||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||
Sbjct 299 CTGAGGTGAAGAGTGAGACTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTCGACCC 358
Query 359 CGAATATCATCAATTCGACTAAGTTTTCTTCTCCGGAGAGTTACTTGTCGCCTGGAATTC 418
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 359 CGAATATCATCAATTCGACGAAGTTTTCTTCGCCGGAGAGTTACTTGTCGCCTGGGATTA 418
Query 419 GGCAGTCTACTCCCTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGG 478
| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GACAGCCTACGCCTTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGA 478
Query 479 TTAATGAGATGCGACATAGCTTGTCTGGGAGCTTTCCTTCTGCTACTCTGTTCAAGGAGT 538
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 479 TTAATGAGATGCGACATAGCTTGTCCGGTAGCTTTCCTTCTGCTACTCTGTTCAAGGAGT 538
Query 539 ACCAGAATACAGCAATGGCGATTCTAGAAAAATCTGACTACACGATGATCTCAGGGAAGG 598
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 539 ACCAGAATACAGCAATGGCGATTCTAGAGAAATCTGATTACACGATGATATCAGGGAAGG 598
Query 599 CATACATTAAAAAGTCAGGTTGGAGGAAAATATCGTTTTACTTCAATGTGTCTTATGAAA 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CATACATCAAAAAGTCAGGTTGGAGGAAAATATCGTTTTACTTCAATGTGTCTTATGAAA 658
Query 659 TAAGAGACAAGACTATTGAATTCGACGAAAACAGAAATGTCCAGCGTGCTGAGTTCACCG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 TAAGAGACAAGACTATTGAATTCGACGAAAACAGAAATGTCCAGCGTGCTGAGTTCATCG 718
Query 719 TTCGAGCCATTATGCATGGAGGAAGATTCGCTGACGGATGGGGTTCTTGTGAGCGACGTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCGAGCCATTATGCATGGAGGAAGATTCGCTGACGGATGGGGTTCTTGTGAGCGACGTG 778
Query 779 AGAAGAAATTTCTCAAACCAAATCACGATATTCCC-AGCACAGCAGAGACCAGAGCCAAA 837
||||||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||
Sbjct 779 AGAAGAAATTTCTTAAACCGAATCACGATAT-CCCTAGCACAGCGGAGACCAGAGCCAAA 837
Query 838 AACAGGGCTTGTCAGGATCTTCTTGGAATCGGTGAATATCGAGAA--CC-A-C-G----- 887
||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 838 AACAGGGCTTGTCAGGATCTTCTTGGAATCGGTGAATATCGAGAAAGCCCAGCTGGGCTT 897
Query 888 --A---TGATCAGACAACATCAAATGTATTTCCCGACCTTGCCAACCCCAAGCTAAACCT 942
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 CCACGATGATCAGACAACATCAAATGTATTTCCCGACCTTGCCAATCCCAAGCTAAACCT 957
Query 943 TACCAAACCCACACCAACCAATGTCTTTCATGGG 976
|| |||||||||||||||| |||||||| |||||
Sbjct 958 TATCAAACCCACACCAACCGATGTCTTTTATGGG 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5