BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478268
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 747 0.0
AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 370 8e-102
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 207 7e-53
> AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321
REVERSE LENGTH=608
Length=608
Score = 747 bits (404), Expect = 0.0
Identities = 513/562 (91%), Gaps = 21/562 (4%)
Strand=Plus/Plus
Query 1 TCCGAATTTTATCGAAATCAATGGCACCGAAGGCAGAGAAGAAACCGGCggag-aagcaa 59
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 32 TCCGAATTTTATCCAAAGCAATGGCACCGAAGGCAGAGAAGAAACCGTCGGAGAAAGC-A 90
Query 60 ccaaaggcagagaagaagattacgaaagaaggaggaagcgagaggaagaagaagactaag 119
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 91 CCAAAGGCAGATAAGAAGATCACGAAAGAAGGAGGAAGCGAGAGGAAGAAGAAGACTAAG 150
Query 120 aagagcacagagaCGTACAAGATCTACCTATTCAAGGTGTTGAAACAGGTTCATCCTGAT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 151 AAGAGCACAGAGACGTACAAGATCTACCTATTCAAGGTGTTGAAACAAGTTCATCCTGAT 210
Query 180 ATTGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGATACCTTCGAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 211 ATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGACACCTTCGAG 270
Query 240 AAAATCGCTCAGGAATCGTCAAAATTGGCTAGGTATAACAAGAAGCCGACGATCACGTCC 299
||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 271 AAAATTGCTCTGGAATCGTCGCGATTGGCTAGGTATAACAAGAAACCGACGATCACGTCC 330
Query 300 CGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTATCGAAGCACGCTGTT 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 CGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTAGCGAAGCACGCTGTT 390
Query 360 TCTGAGGGTACCAAAGCCGTCACAAAATTCACCAGCTCTTAGAT-AGATTCTTCtttttt 418
||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 391 TCTGAGGGTACCAAAGCCGTCACCAAATTCACCAGTTCTTAGATTAGGTTCTT-TTTTT- 448
Query 419 ttctctttggttttattttcggtttatatttttatCAGTTGATCTCAAAGATATAATTTT 478
||||| | |||||||||||||| |||| || | |||||||| ||||||||||||||||
Sbjct 449 --CTCTTCGATTTTATTTTCGGTTAATATGTTCACCAGTTGATTTCAAAGATATAATTTT 506
Query 479 CGGCAGTCTCT---A-ATT------GATT--TT--ACGTTACGATGCTACTGAAATTAGG 524
||||||||||| | ||| |||| || |||||| ||||||| ||||||||||
Sbjct 507 CGGCAGTCTCTTCGATATTTTCTATGATTGATTTTACGTTATGATGCTATTGAAATTAGG 566
Query 525 GTTTCCAAATCTTTGGGTATAA 546
|||| |||||||||||||||||
Sbjct 567 GTTTACAAATCTTTGGGTATAA 588
> AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140
REVERSE LENGTH=399
Length=399
Score = 370 bits (200), Expect = 8e-102
Identities = 337/400 (84%), Gaps = 22/400 (6%)
Strand=Plus/Plus
Query 21 ATGGCACCGAAGGCAGAGAAGAAACCGGCggag-aag---ca--accaaaggcagagaag 74
||||| ||||||||||||||||||||||||||| ||| || ||||||||| ||||||
Sbjct 1 ATGGCGCCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAAAGGCGGAGAAG 60
Query 75 aagattacgaaagaaggagg-a--agc--ga--g---ag--gaagaagaagactaagaag 122
||||| ||||||||||||| | ||| || | || |||||||||||| ||||||
Sbjct 61 AAGATCGCGAAAGAAGGAGGAACGAGCGAGATTGTCAAGAAGAAGAAGAAGACGAAGAAG 120
Query 123 agcacagagaCGTACAAGATCTACCTATTCAAGGTGTTGAAACAGGTTCATCCTGATATT 182
|||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 121 AGCACAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAACAGGTTCATCCAGATATT 180
Query 183 GGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGATACCTTCGAGAAA 242
|| |||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 181 GGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATCAACGACATTTTCGAGAAA 240
Query 243 ATCGCTCAGGAATCGTCAAAAT-TGGCTAGGTATAACAAGAAGCCGACGATCACGTCCCG 301
|||||||||||||||| | | ||| | || || ||||| |||||||||||||| ||
Sbjct 241 CTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAAACCGACGATCACGTCTCG 299
Query 302 GGAAATCCAAACCGCCGTAAGGCTCGTGT-TGCCTGGTGAATTATCGAAGCACGCTGTTT 360
||||||||||||||||| || || || | ||||||||||||| | ||||| || || |
Sbjct 300 TGAAATCCAAACCGCCGTGAGACTTGT-TCTGCCTGGTGAATTGGCTAAGCATGCCGTCT 358
Query 361 CTGAGGGTACCAAAGCCGTCACAAAATTCACCAGCTCTTA 400
|||| || |||||||| ||||| |||||||| ||||||||
Sbjct 359 CTGAAGGAACCAAAGCTGTCACCAAATTCACAAGCTCTTA 398
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 207 bits (112), Expect = 7e-53
Identities = 244/308 (79%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 100 agaggaagaagaaga-ctaagaagagcacagagaCGTACAAGATCTACCTATTCAAGGTG 158
||| ||||||| ||| | ||||||| | ||||| |||||||||||| | |||||||||
Sbjct 192 AGAAGAAGAAG-AGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAGGTG 250
Query 159 TTGAAACAGGTTCATCCTGATATTGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGT 218
||||| || |||||||| ||||| || ||||| | ||||||||||||||||||||||||
Sbjct 251 TTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAACAGT 310
Query 219 TTCATCAACGATACCTTCGAGAAAATCGCTCAG-GAATCGTCAAAA-TTGGCTAGGTATA 276
|||||||| |||| ||| |||||| | ||| | || || || || ||| | ||||| |
Sbjct 311 TTCATCAATGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTG-CGAGGTACA 368
Query 277 ACAAGAAGCCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTG 336
|||||||||||||||| || || |||| || || || || || || || ||||||||||
Sbjct 369 ACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCCTG 428
Query 337 GTGAATTATCGAAGCACGCTGTTTCTGA-GGGTACCAAAGCCGTCACAAAATTCACCAGC 395
| || || |||| || ||||||||||| ||| || || || || || || || || ||
Sbjct 429 GAGAGTTGGCGAAACATGCTGTTTCTGAAGGG-ACTAAGGCGGTTACGAAGTTTACGAGT 487
Query 396 TCTTAGAT 403
||||||||
Sbjct 488 TCTTAGAT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5