BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478277
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09570.1 | Symbols: | Lung seven transmembrane receptor fam... 2241 0.0
> AT3G09570.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr3:2940446-2942109 FORWARD LENGTH=1664
Length=1664
Score = 2241 bits (1213), Expect = 0.0
Identities = 1348/1414 (95%), Gaps = 6/1414 (0%)
Strand=Plus/Plus
Query 2 GTTTCTCAACTCTACTGTTACGGCATGAAAATGACGAGACTACCCCTCTTCGTCGTCCTC 61
|||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 49 GTTTCTCACCTCTACAGTTACGGCGCGAATATGACGAGACTACCCCTCTTCGTCGTCCTC 108
Query 62 CTACTCTTCACCGCAAGTTTCATCACTC-CTACGGCGGCGGAGATCAAGTCTCTCACAAT 120
|| |||||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||
Sbjct 109 CTCCTCTTCTCCGCAAGTTGCATCACTCGC-ACGGCGGCGGAGATCAAATCTCTCACAAT 167
Query 121 TTCCGACGATTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGTCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 168 CTCCGACGATTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGCCA 227
Query 181 TGTTAGCGTCTCTGTTTCCTCTGTATCAGTAGTATCTTCTTCGTCTGTTCCGATCCCAGA 240
||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct 228 TGTTAGCGTCTCTATTTCCTCTGTAGCAGTAGTATCTTCTTCGTCTGATCCGATCCCGGA 287
Query 241 TCCGTCGAGGCTAGGGTTCTTCCTTATGTCCGAGGAATCGCTTCTCCAGGTAGTCTTAGA 300
||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 288 TCCATCGAGGTTAGGGTTCTTCCTTATGTCAGAGGAATCGCTTCTCCAGGTAGTCTTAGA 347
Query 301 GATCGAGCAAAACCCTAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCAC 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GATCGAGCAAAACCCCAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCAC 407
Query 361 ATTAAAAGATCTCTCTTCTCCTCCTGGTTCCAAATACGAGCACTTGTACCCGGTGATTTC 420
||| | ||||||||| |||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 408 ATTTCACGATCTCTCTCCTCCCCCTGGTTCCAAATACGAGCACTTGTATCCGGTGATGTC 467
Query 421 TCCGAACGAATACTCTCTCTTCTTCGTGAATTGCGTACCGGAAACCAAAATTTCGATGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCCGAACGAATACTCTCTCTTCTTCGTGAATTGCGTACCGGAAACCAAAATTTCGATGAA 527
Query 481 GGTTCGAACGGAGATGTACAATTTAGATCCGAACGGGTCTAAGGATTACCTCCCTGCCGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 GGTTCGAACGGAGATGTACAATTTAGATCCGAACGGGTCTAAGGATTACCTTCCTGCCGG 587
Query 541 GTCAACCCGATTACCCGGATTGTATTTCTTCTTCTCCCTCGGTTACTTAGCTTTCCTTGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTCAACCCGATTACCCGGATTGTATTTCTTCTTCTCCCTCGGTTACTTAGCTTTCCTTGG 647
Query 601 TCTCTGGGGCTATGCTTGTTGGGTCAATAAACGGGTTGTTCATAGGATCCACGTTCTCAT 660
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 648 TCTCTGGGGATATGCTTGTTGGGTCAATAAACGTGTTGTTCATAGGATCCATGTTCTTAT 707
Query 661 GGCGGCTCTGCTTCTTA-TGAAGGCTTTGAATCTGATCTGTGCCGCCGAGGATAAGCACT 719
||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 708 GGCGGCTCTGCTT-TTAATGAAGGCTTTGAATCTGATCTGCGCCGCCGAGGATAAGCATT 766
Query 720 ACGTGAAAGTCACCGGTACTCCTCACGGCTGGGATGTCTTATTCTACATTTTCCAGTTTA 779
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 767 ACGTGAAAGTCACCGGTACTCCTCATGGCTGGGATGTTTTATTCTACATTTTCCAGTTTA 826
Query 780 TTCGTGTTGTTCTTCTCTTCACTGTCATTGTGTTGATTGGAACTGGTTGGTCCTTCTTGA 839
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 827 TTCGTGTTGTTCTTCTCTTCACTGTGATTGTGTTGATTGGAACTGGCTGGTCCTTCTTGA 886
Query 840 AGCCGTTTTTACAAGAGAAAGAGAAGAATGTGTTGATGGTTGTTGTCCCACTTCAGGTTC 899
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 887 AGCCATTCTTACAAGAGAAAGAGAAGAATGTGTTGATGGTTGTTGTTCCACTTCAGGTTC 946
Query 900 TCGCCAACATTGCTTCCGTTGTGATTGGAGAGACTGGACCTTTTATTAAAGACTGGGTTA 959
|||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 947 TCGCTAACATTGCTTCCATTGTGATTGGAGAGACTGGACCTTTTATCAAAGATTGGGTTA 1006
Query 960 CTTGGAATCAGATATTCTTGCTTGTAGATATAGTTTGTTGTTGTGCAATCTTATTTCCTA 1019
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1007 CTTGGAATCAGATATTCTTGCTTGTAGATATAGTTTGCTGTTGTGCGATCTTATTCCCTA 1066
Query 1020 TTGTTTGGTCGATTCGTTCGCTAAGAGAGACTTCAAAAACCGATGGGAAAGCGGCTAGGA 1079
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1067 TTGTTTGGTCGATACGTTCGCTAAGAGAGACTTCGAAAACCGATGGGAAAGCGGCTAGGA 1126
Query 1080 ACTTGGCGAAATTGACTCTGTTTAGACAATTCTACATTGTTGTCATCGGGTATTTGTACT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ACTTGGCGAAATTGACTCTGTTTAGACAATTCTACATTGTTGTCATCGGGTATTTGTACT 1186
Query 1140 TTACGAGGATTGTAGTGTTTGCACTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGA 1199
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1187 TTACGAGGATTGTAGTGTTTGCGCTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGA 1246
Query 1200 GTAATGCAGCTGAGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCTATATGTTCA 1259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GCAATGCAGCTGAGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCTATATGTTCA 1306
Query 1260 GGCCGGTCGAGAAGAATGAGTATTTCGTTTTAGATGAAGAAGAAGAAGAAGCCGCAGAGC 1319
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1307 GGCCTGTCGAGAAGAATGAGTATTTCGTTATAGATGAAGAAGAAGAAGAAGCCGCCGAGC 1366
Query 1320 TGGCCTTGAAGGAGGATGATTTTGAACTCTGAAACAGATCAAGGACTTTCA-CTGACTGT 1378
||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 1367 TGGCCTTGAAGGAGGATGATTTTGAACTCTGAAGCAGATCAAGGAATTTCATC-GACTGT 1425
Query 1379 ATAAGCTGTGATGACATTTGCTTTTTGTTTTCTT 1412
||||||||||| ||||| |||||||| || ||||
Sbjct 1426 ATAAGCTGTGAGGACATCTGCTTTTTCTTATCTT 1459
Score = 171 bits (92), Expect = 2e-41
Identities = 104/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1412 TGTAGTTTACTTGCAAAAGGGATTAACTGTGTATTTTTCTCTTATATCGTAAAAGCTTGT 1471
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1494 TGTAGTTTACTTGCAAAAGGGATTAACTGTGTATTTTTCTCTTATATCATAAAAGCTGGT 1553
Query 1472 TTGTCCTAAGACTTATTTGCTAGTAAGAAGAAGATCAGTGCCTCTGCTGT 1521
||||||||||||| || |||||||||||||| |||||| |||||||||||
Sbjct 1554 TTGTCCTAAGACTAATCTGCTAGTAAGAAGAGGATCAGAGCCTCTGCTGT 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5