BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478278
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09580.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2394 0.0
> AT3G09580.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:2942504-2944078 REVERSE LENGTH=1575
Length=1575
Score = 2394 bits (1296), Expect = 0.0
Identities = 1485/1578 (94%), Gaps = 5/1578 (0%)
Strand=Plus/Plus
Query 1 GAATGAGAAAAACCTTATCCAAACTTTTAAAATGCCGCCATTGGCGAACACTCTCCCAAT 60
|||||||||||||||||||||||||||||||||| | || |||||| | |||||||||
Sbjct 1 GAATGAGAAAAACCTTATCCAAACTTTTAAAATG-C-CC-GTGGCGATCTCTCTCCCAAC 57
Query 61 CTCATCTATTTCTCAATTCTTCCCTCCCCGCCGCGGCCATGCAAATCACCGATATCGACG 120
|||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 58 CTCATCTACTTCTCATTTCTTCCCTCGCCGCCGCGGCCATGCAAATCACCGATATCAACG 117
Query 121 CTTTTCCGGAGCTCAATCTTCCACGGCAGACCCGTACAATCGGAAGAATCAAACTGGCGT 180
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 118 CTTTTCCGGAGCTCAATCTTCCACGGAAGATCCGTACATTCGGAAGAATCAAACTGGCGT 177
Query 181 CATCATCATCGGCGCTGGACTCGCTGGTTTAGCCGCCGCGAACCAGCTCACCTCCAAACG 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 CATCATCATCGGCGCTGGACTCGCTGGTTTAGCCGCCGCAAACCAGCTCACCTCCAAACG 237
Query 241 AATCCCTTTCCTACTCCTCGAAGCTTCCGACGGCGTCGGCGGACGCGTCCGTACAGATAT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 AATCCCTTTCCTACTCCTCGAAGCTTCCGATGGCGTCGGCGGACGCGTCCGTACAGATAT 297
Query 301 CGTCGACGGCTTCTTTCTGGACAGAGGATTTCAGATTTTCATCACTGCGTATCCCGAAGC 360
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 298 CGTCGACGGCTTCTTTCTCGACAGAGGATTTCAGATTTTCATCACCGCGTACCCCGAAGC 357
Query 361 TAAAAAGCTTCTAGATTACGAAGCACTGGATCTGCAGCGATTCTACGCCGGAGCTAAGGT 420
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 TAAAAAGCTTCTAGATTATGAAGCACTGGATCTGCAGAGATTCTACGCCGGAGCTAAGGT 417
Query 421 TTTTTACGGCGGAAAATTTCACACCGTAGCTGATCCTCTCCGACATTTTTGGGATTCGGT 480
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 GTTTTACGGCGGTAAATTTCACACCGTCGCTGATCCTCTCCGACATTTTTGGGATTCGGT 477
Query 481 GGCATCTCTCACGAATCCGATTGGATCCGTTGTGGACAAAGGGCTTATCGCTTTGACGAG 540
|||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 478 GGCATCTCTCGCGAATCCGATCGGATCCGTCGTTGACAAAGGGCTTATCGCTTTGACGAG 537
Query 541 AGCTAGGGTTCTAATCAAGTCAGACGAAGAAATATTGACTGCTTCCGATGAAGTTCCGAC 600
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 538 AGCTAGGGTTCTAATCAAGTCAGACGAAGAGATATTGACTGCCGCCGATGAAGTTCCCAC 597
Query 601 CATTGATCTCCTCCGTAAGATCGGTTTCTCCGAAGCGATTCTTGATCGGTTCTTCCGACC 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 CATTGATCTCCTCCGTAAGATCGGTTTCTCCGAAACGATTCTTGATCGGTTCTTCCGACC 657
Query 661 ATTCTTCGGCGGAATTTTCTTCGACAGAGACCTCGAGACGACCTCGAAGCTCTTTGATTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 ATTCTTCGGCGGAATTTTCTTCGACAGAGACCTCGAGACGACCTCGAAGCTCTTCGATTT 717
Query 721 CGTTTTCCGGTGTCTTGCTCTCGGAGAAAATACACTTCCAGCCATGGGAATCGGAGAAAT 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 CGTTTTCCGGTGTCTTGCTCTCGGAGAAAACACACTTCCAGCCATGGGAATCGGAGAAAT 777
Query 781 CTCGAACCAGTTGGCCGCGAAATTACCAGCTAATTCCGTCTTGTTGAACACAAGGGTCGC 840
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 778 CTCGAACCAGTTGGCAGCGAAGTTACCCGCTAAGTCCGTCTTGTTGAACACAAGGGTCGC 837
Query 841 TTCGATTGAGTATCCAAATGGAACGGGTTCTGATCCACCTAGCGTGAGACTCCAAGACGG 900
||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 838 TTCTATTGAGTATCCAAATGGATCGGGTTCGGATCCACCTAGCGTGAGGCTCCAAGACGG 897
Query 901 CGGCGTTTTGAAGGCAGAGCTAGGTGTCATAGTCGCCGTCGAGCAACCGGAAGTGGATAA 960
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 898 CAGCGTTATGAAGGCAGAGCTAGGTGTCATAATCGCCGTCGAGCAACCGGAAGTGAATAA 957
Query 961 GCTTCTCGATGGGATCAGAGACCCGGTTATGACAAAACCGGCTCGGAGCACCATTTGTCT 1020
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 958 GCTTCTCGATGGGATCAGAGACCCGGTTATAACAAAACCAGCTCGGAGCACTATTTGTCT 1017
Query 1021 CTACTTTACAGCTGAACCAAACCAGATACCGGTACAAGACCCGGTTCTATGTCTCAACGG 1080
||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1018 TTACTTCACAGCTGAACCGAACCAAATACCGGTACAAGACCCGGTTCTATTTCTCAACGG 1077
Query 1081 GACAAATACCGGTATAATCAACAACTTGTTCTTTGCTACAAATGTTGCTCGGACATACGC 1140
| ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1078 GTCAAATTCCGGTATAATCAACAACATGTTCTTCGCTACAAACGTTGCTCGGACATACGC 1137
Query 1141 GCCACCGGGAAAGGCTCTAGTTTCGGTATCATTGATCGGATCGTTCGAGGATAGATCCGA 1200
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 1138 GCCACCGGGAAAGGCTCTGGTTTCGGTATCATTGATCGGATTGTTTGAGGATAGAACCGA 1197
Query 1201 TGATGACTTAGCAGCAGAGGTTATTAGAGAACTCTCTGGTTGGTTTGGTGAGTCTTCGGT 1260
|||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1198 TGATGATTTAGCAGCAGAAGTTCTTAGAGAACTCTCTGGTTGGTTTGGTGAGTCTCCGGT 1257
Query 1261 TATGTCATGGAAACATTTGAAAACGTACCGGATCCAATTCGCTCAGCCTAACCAATGCCC 1320
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1258 TATGTCATGGAAACATTTGAAAACATACCGGATCCAATTCGCTCAGCCTAACCAATGTCC 1317
Query 1321 ACCCACTGATTTGGTTAAGAGTCCTCGGGTCGGGTCGGGTCTTTACTTGAGCGGTGATTA 1380
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACCCACTGATTTGGTCAAGAGTCCTCGGGTCGGGTCGGGTCTTTACTTGAGCGGTGATTA 1377
Query 1381 CATGACTTCTGCTACATTTGACGGAGCTTTGGTCTCTGGGAGACGAGCCGTGGAAGTTTT 1440
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CATGACTTCTGCTACATTTGATGGAGCTTTGGTCTCTGGGAGACGAGCCGTGGAAGTTTT 1437
Query 1441 GTTACGAGAAAAGGGACTAATCTAATAGAAATTTTCTGTTATTCAAGACTCTTTGTGTAG 1500
| ||||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| | |
Sbjct 1438 GCTACGAGAAACGGGACTAATCAAATAGATTTTTTTTGTTATTTAAGATTCTTTGTATGG 1497
Query 1501 CTTTATTCATGGCTTGTAT--AGTTGTATGTATCCTCTAAGATCATATATTGGAAAATTA 1558
||| ||||||| ||||||| || ||||||||||||||||||||||| |||| ||||||
Sbjct 1498 CTTAATTCATGTCTTGTATGTAGAAGTATGTATCCTCTAAGATCATATGTTGGCAAATTA 1557
Query 1559 AACATCATGGTTATTGCT 1576
| ||| ||||||| ||||
Sbjct 1558 AGCATTATGGTTAATGCT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77810844750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5