BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478282
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09630.1 | Symbols: | Ribosomal protein L4/L1 family | chr3... 2222 0.0
AT5G02870.1 | Symbols: | Ribosomal protein L4/L1 family | chr5... 1373 0.0
> AT3G09630.1 | Symbols: | Ribosomal protein L4/L1 family | chr3:2953743-2955713
FORWARD LENGTH=1560
Length=1560
Score = 2222 bits (1203), Expect = 0.0
Identities = 1344/1412 (95%), Gaps = 9/1412 (1%)
Strand=Plus/Plus
Query 10 AAACCCTAATTTCTCAAAGAGTCTACagagacagagagtgagagaagagagaAACCTATC 69
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | ||
Sbjct 4 AAACCCTAATTTCTCAAAGAGTCTAAAGAGACGGAGAGTGAGAGAAGAGAGAAACATTTC 63
Query 70 GAGACAAATGGCCGCCGCCGCTACTCGTCCTCTCGTCACCGTCCAAGTTTTGGATGGTGA 129
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 64 GAGACAAATGGCCGCCGCCGCTGCTCGTCCTCTCGTCACCATCCAAACCTTGGATGGTGA 123
Query 130 CATGTCCACCGATCAATCCTCCACCGTCGTA-TTACCCGACGTCATGACGGCGCCAGTTC 188
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 124 CATGTCCACCGATCAATCCTCCACCGTCGTACTT-CCCGACGTCATGACGGCGCCAGTTC 182
Query 189 GTCCAGACATCGTTAACTTTGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACG 248
| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 183 GACCAGACATCGTTAACTTCGTTCACGCCCAAATCTCCAACAACAGCCGTCAGCCATACG 242
Query 249 CCGTCTCAAAGAAGGCCGGTCACCAGACCTCCGCGGAGTCCTGGGGAACCGGACGTGCCG 308
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 243 CCGTATCGAAGAAGGCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGACGTGCCG 302
Query 309 TGTCTCGTATCCCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCG 368
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 303 TGTCTCGTATCCCTCGTGTTCCCGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCG 362
Query 369 GTAACATGTGTCGTGGTGGTCGGATGTTCGCTCCTACCAAGATCTGGCGCCGCTGGCACC 428
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 363 GTAACATGTGTCGTGGTGGTCGTATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACC 422
Query 429 GTCGTGTCAATGTGAACATGAAGCGTCACGCAATCGTCTCAGCCATCGCCGCAACTGCTG 488
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 423 GTCGTGTCAATGTCAACATGAAGCGTCACGCAATCGTCTCAGCTATCGCTGCAACTGCTG 482
Query 489 TACCTTCGCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTG 548
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTCCTGCGCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTG 542
Query 549 TTGTGAGTGACTCCGCCGAGGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTACTGAAAC 608
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 543 TTGTGAGTGACTCCGCCGAAGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTTTTGAAAC 602
Query 609 AGATCGGGGCTTATGATGATGCTGAGAAGGCAAAGGATAGCATTGGGATCCGTCCTGGTA 668
||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 603 AGATCGGTGCTTATGATGATGCTGAGAAGGCAAAGAACAGCATTGGAATCCGTCCTGGTA 662
Query 669 AAGGTAAAATGAGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTGGTTTATGGAA 728
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 663 AAGGTAAAATGAGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTGGTGGTTTATGGAA 722
Query 729 CTGAAGGAGCTAAGATAGTTAAGGCGTTTAGGAATCTTCCTGGTGTTGAGCTCTGTCATG 788
|||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 723 CTGAAGGATCTAAGATAGTTAAGGCGTTTAGAAACCTTCCTGGTGTTGAGCTTTGTCATG 782
Query 789 TGGAGAGGCTTAATTTGTTGAAGCTTGCTCCTGGTGGTCACCTTGGGCGGTTTGTGATCT 848
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 783 TGGAGAGGCTTAATTTGTTGAAGCTTGCTCCTGGTGGTCACCTTGGTCGGTTTGTGATCT 842
Query 849 GGACCAAGTCTGCTTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAG 908
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGACCAAGTCTGCCTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAG 902
Query 909 AGAAAAAGAAGGGATATGTGCTTCCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGA 968
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AGAAGAAGAAGGGGTATGTGCTTCCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGA 962
Query 969 TTATCAACTCAGATGAGATTCAGAGTGTTGTGAAGCCGATCAAGAAGGATGCGAAGAGGG 1028
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 963 TTATCAATTCAGATGAGATTCAGAGTGTTGTGAATCCGATCAAGAAGGATGCGAAGAGGG 1022
Query 1029 CTGTTCTTAAGAAGAATCCATTGAAGAATCTGAATGTGATGTTGAAGCTGAATCCTTATG 1088
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1023 CTGTTCTTAAGAAGAATCCATTGAAGAATCTCAATGTGATGTTGAAGTTGAATCCTTATG 1082
Query 1089 CTAAGACTGCTAAGAGGATGTCACTGTTGGCTGAAGCACAAAGAGTTAAGGCTAAGAAGG 1148
||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1083 CTAAGACCGCGAAGAGGATGTCACTGTTAGCTGAAGCACAGAGAGTTAAGGCTAAGAAGG 1142
Query 1149 AGAAGCTTTCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAG 1208
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGAAGCTCGCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAG 1202
Query 1209 CAGGCAAGTCGTGGTACCAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACT 1268
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CAGGCAAGTCGTGGTACAAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACT 1262
Query 1269 TCACCAAATGGCTCGGTGCTAGCCAGTAATAAG-TCATCTGCTGTGGAACACTTTCCATA 1327
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1263 TCACCAAATGGCTCGGTGCTAGCCAGTAATAATCTCGTCTGCTTTGGAACACTTTCCATA 1322
Query 1328 TTTTTAGTCAAA-GATTTTGttttttttttttAATCTGCTTTGTCTTTTGGAGTCTGGAT 1386
|||| ||||||| ||||||| ||||||| |||||| ||||||||| || ||||||||
Sbjct 1323 TTTT-AGTCAAAAGATTTTGGTTTTTTT----AATCTGTTTTGTCTTTGGGTGTCTGGAT 1377
Query 1387 ATTAAGTTGAATTATGAACAAGTTTCACTTTT 1418
|| |||||||||||||||||||||||||||||
Sbjct 1378 ATCAAGTTGAATTATGAACAAGTTTCACTTTT 1409
> AT5G02870.1 | Symbols: | Ribosomal protein L4/L1 family | chr5:657786-659733
FORWARD LENGTH=1475
Length=1475
Score = 1373 bits (743), Expect = 0.0
Identities = 1067/1224 (87%), Gaps = 19/1224 (2%)
Strand=Plus/Plus
Query 83 GCCGCCGCTACTCGTCCTCTCGTCACCGTCCAA-GTTTTGGATGGTGACATGTCCACCGA 141
|||||||| | || ||||| |||||||||||| | || || ||||||||| ||||||
Sbjct 57 GCCGCCGC-A--CGACCTCTTGTCACCGTCCAAGGACTT-GACGGTGACATGAGCACCGA 112
Query 142 TCAATCCTCCACCGTC-GTATTACCCGACGTCATGACGGCGCCAGTTCGTCCAGACATCG 200
||||||| |||||||| | ||||| ||||||||||| || |||||||| || ||||| |
Sbjct 113 TCAATCCACCACCGTCACT-TTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTG 171
Query 201 TTAACTTTGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCCGTCT-CAAAG 259
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 172 TCAACTTCGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAA- 230
Query 260 AAGGCCGGTCACCAGACCTCCGCGGAGTCCTGGGGAACCGGACGTGCCGTGTCTCGTATC 319
|||||||||||||| |||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 231 AAGGCCGGTCACCAAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATC 290
Query 320 CCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCGGTAACATGTGT 379
|||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 291 CCTCGTGTTCCTGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGT 350
Query 380 CGTGGTGGTCGGATGTTCGCTCCTACCAAGATCTGGCGCCGCTGGCACCGTCGTGTCAAT 439
||||||||||| ||||| ||||| || ||||||||| | |||||||||||||||||||||
Sbjct 351 CGTGGTGGTCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAAT 410
Query 440 GTGAACATGAAGCGTCACGCAATCGTCTCAGCCATCGCCGCAACTGCTGTACCTTCGCTT 499
|| ||||||||| | ||||| || || || || ||||| || |||||||| || | |||
Sbjct 411 GTCAACATGAAGAGGCACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTT 470
Query 500 GTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTGAGTGAC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 471 GTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGCGAC 530
Query 560 TCCGCCGAGGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTACTGAAACAGATCGGGGCT 619
|| || || |||||||||||||| |||||||||||||||||| |||| |||||||| |||
Sbjct 531 TCAGCTGAAGCTGTGGAGAAGACATCAGCTGCGATCAAGGTATTGAAGCAGATCGGTGCT 590
Query 620 TATGATGATGCTGAGAAGGCAAAGGATAGCATTGGGATCCGTCCTGGTAAAGGTAAAATG 679
|| || ||||| ||||| || ||| | || ||||| || |||||||||||||||||||||
Sbjct 591 TACGACGATGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATG 650
Query 680 AGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTGGT-TTATGGAACTGAAGGAGC 738
||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 651 AGGAATCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTT-TGGAACTGAAGGAGC 709
Query 739 TAAGATAGTTAAGGCGTTTAGGAATCTTCCTGGTGTTGAGCTCTGTCATGTGGAGAGGCT 798
||||| || || || |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 710 CAAGATTGTGAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCACGTTGAGAGGCT 769
Query 799 TAATTTGTTGAAGCTT-GCTCCTGGTGGTCACCTTGGGCGGTTTGTGATCTGGACCAAGT 857
||| |||||||| || || ||||||||||||||||| |||||||||| ||||| ||||
Sbjct 770 TAACTTGTTGAAA-TTAGCCCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGT 828
Query 858 CTGCTTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAGAGAAAAAGA 917
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 829 CTGCTTTTGAGAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCATCAGAGAAGAAGA 888
Query 918 AGGGATATGTGCTT-CCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGATTATCAAC 976
|||| || || ||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 889 AGGGTTACGT-CTTGCCTCGTGCGAAGATGGTGAATGCTGATCTTGCTAGGATTATTAAC 947
Query 977 TCAGATGAGATTCAGAGTGTTGTGAAGCCGATCAAGAA-GGATGCGAAGAGGGCTGTTCT 1035
|| |||||| | |||||||| ||||| ||||| ||| | || | | ||||| || |||||
Sbjct 948 TCCGATGAGGTACAGAGTGTGGTGAACCCGATTAAGGATGGTTCC-AAGAGAGCGGTTCT 1006
Query 1036 TAAGAAGAATCCATTGAAGAATCTGAATGTGATGTTGAAGCTGAATCCTTATGCTAAGAC 1095
|||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||
Sbjct 1007 GAAGAAGAATCCATTGAAGAACCTTAATGTGATGTTCAAGTTGAATCCTTATGCTAAGAC 1066
Query 1096 TGCTAAGAGGATGTCACTGTTGGCTGAAGCA-CAAAGAGTTAAGGCTAAGAAGGAGAAGC 1154
|| ||||| ||||| |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 1067 CGCAAAGAGAATGTCTCTGTTGGCTGAAGCTTCAAGG-GTTAAGGCTAAGAAGGAGAAGC 1125
Query 1155 TTTCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAGCAGGCA 1214
| |||||||||||| ||| || ||||||||||| || ||||||||||||||||
Sbjct 1126 TCGAGAAGAAGAGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCA 1185
Query 1215 AGTCGTGGTACCAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACTTCACCA 1274
|| | ||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1186 AGGCTTGGTATCAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCA 1245
Query 1275 AATGGCTCGGTGCTAGCCAGTAAT 1298
| ||||| || ||||| |||||||
Sbjct 1246 AGTGGCTTGGCGCTAGTCAGTAAT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69879158640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5