BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478286
Length=2344
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat ... 3675 0.0
> AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr3:2958679-2961299 FORWARD
LENGTH=2621
Length=2621
Score = 3675 bits (1990), Expect = 0.0
Identities = 2251/2372 (95%), Gaps = 38/2372 (2%)
Strand=Plus/Plus
Query 1 ACACTCTCTCTCCAATGGACCTAAAATGAACATTCTCCGACCGCCGACG---TCATCA-C 56
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
Sbjct 1 ACACTCTCTCTCCAATGGACCTAAAATGAACATTCTCCGACCTCCGACGTCATCATCATC 60
Query 57 --CGTCGTTTCCTCCATACCCAAA-CTCCGTTTCTTTAACCCCTCCGGTGTCTTTCACAC 113
|||||||||||||||||||||| | ||||||| |||||||||||||| |||||||| |
Sbjct 61 TTCGTCGTTTCCTCCATACCCAAAGC-CCGTTTCATTAACCCCTCCGGTATCTTTCACTC 119
Query 114 TC--CC-CAA---C----A-CT-T-C-C-AT-CACCAACGCTGGTCGTCCCACGC--GTC 155
|| || ||| | | || | | | || ||| || | || || |||| |||
Sbjct 120 TCATCCACAACCCCATAAACCTCTGCTCTATAAACCCAC-C-ATTC-ACCAACGCTGGTC 176
Query 156 GCCCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGGAGACCTCTCGT 215
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 GACCAATTTTCCAACGGTCCGCCTCCGGCACTGCTAATAGCTCCGCCGAAGACCTCTCGT 236
Query 216 CGTTCTTGGGCTCTCCTTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTC 275
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTTCTTGGGCTCTCCCTCAGAGGCGTATTCAACACACAACGACCAAGAGCTTTTGTTTC 296
Query 276 TCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTCCGCAATAGAAAAACCGATGAAGCTTGGGCTAAGTATGTTCAATCCACTCATCTCC 356
Query 336 CTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAGTTATCTTATCAATCTAAACCCGAGA 395
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 357 CTGGACCAACTTGTCTTAGCCGTTTAGTTTCTCAATTATCTTATCAATCCAAACCCGAGA 416
Query 396 GCCTCACGCGCGCACAGTCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTTCATCG-C 454
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 417 GTCTCACGCGCGCACAATCTATCCTCACGCGCCTCCGCAATGAACGCCAGCTGCATCGCC 476
Query 455 TTGGACGCTAATTCTCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTT 514
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TT-GACGCTAATTCCCTCGGTCTCCTCGCCATGGCTGCAGCGAAGTCTGGCCAAACACTT 535
Query 515 TACGCTGTCTCCGTCATCAAATCCATGATTCGTTCTGGGTATTTACCTCACGTTAAAGCT 574
||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 536 TACGCCGTCTCCGTCATCAAGTCCATGATTCGTTCTGGGTATTTACCTCATGTTAAAGCG 595
Query 575 TGGACAGCTGCAGTAGCTAGTCTCTCTGCTGCCGGAGATGATGGACCGGAAGAATCTATC 634
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 596 TGGACAGCTGCAGTAGCTAGTCTCTCTGCTTCCGGAGATGATGGTCCGGAAGAATCTATC 655
Query 635 AAACTCTTCACCGCTATTACGCGACGAGTCAAACG-TTTCGGTGACCAGTCTTTGGTTGT 693
|||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 656 AAACTCTTCATCGCTATTACGCGACGAGTCAAACGATTT-GGTGACCAGTCTTTGGTTGG 714
Query 694 TCAATCGAGGCCTGATACGGCGGCGTTTAACGCAGTGCTTAACGCTTGTGCAAATCTTGG 753
|||||| ||||||||||||||||| ||||| || ||||||||||||||||| || |||||
Sbjct 715 TCAATCTAGGCCTGATACGGCGGCATTTAATGCGGTGCTTAACGCTTGTGCTAACCTTGG 774
Query 754 TGATACTGAGAAGTACTGGAAGTTGTTCGACGAAATGTCTGAGTGGGATTGTGAGCCTGA 813
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 775 TGATACTGACAAGTATTGGAAGTTGTTCGAGGAAATGTCTGAGTGGGATTGTGAGCCTGA 834
Query 814 TGTCTTGACTTACAATGTTATGATCAAGCTGTGTGCGAGGGTTGATCGGAAGGAATTGAT 873
|||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 835 TGTCTTGACTTACAATGTTATGATTAAGCTTTGTGCGAGGGTTGGTCGGAAGGAATTGAT 894
Query 874 TGTGTTTGTGTTGGAGAGGATTATTGACAAGGGGATTAAGGTTTGCATGACTACAATGCA 933
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 TGTGTTTGTGTTGGAAAGGATTATTGACAAGGGGATTAAGGTTTGTATGACTACAATGCA 954
Query 934 TTCCCTTGTTGCAGCTTATGTTGGGTTTGGTGATTTGCGTACTGCGGAGAGAATTGTTCA 993
||| |||||||||||||||||||||||||| |||||| | ||||| ||||| ||||||||
Sbjct 955 TTCTCTTGTTGCAGCTTATGTTGGGTTTGGAGATTTGAGAACTGCTGAGAGGATTGTTCA 1014
Query 994 AGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAATGCTGAGGA 1053
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1015 AGCGATGAGGGAGAAAAGGAGAGATCTTTGTAAGGTTCTACGAGAATGCAACGCTGAGGA 1074
Query 1054 TTTGAAGGAGAAAGAAGAGGAAGAAGCAGCAGAAGATGATGGAGATGCGTTTGAGGATGA 1113
||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1075 TTTGAAGGAGAAAGAAGAGGAAG-A--AGCAGAAGATGATGAAGATGCGTTTGAGGATGA 1131
Query 1114 TGAAGATTCGGGTTATTTGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTG-AGGATGTGT 1172
|||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct 1132 TGAAGACTCGGGTTATTCGGCTCGGGATGAGGTAAGTGAAGAGGGGGTTGTA-GATGTGT 1190
Query 1173 TCAAGAAATTGCTGCCTAATTCGGTTGATCCGAGCAGTGACCCGCCATTGTTGCCTAAAG 1232
||||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 1191 TCAAGAAATTGCTACCTAACTCGGTTGATCCGAGTGGTGAGCCACCATTGTTGCCTAAAG 1250
Query 1233 TCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGC 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TCTTTGCACCAGACTCAAGGATCTACACGACGTTGATGAAAGGTTATATGAAGAATGGGC 1310
Query 1293 GTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTGTGGCAGACACAGCTAGAATGCTTGAGGCAATGAGGCGTCAAGATGATAGAAACAGTC 1370
Query 1353 ACCCAGATGAAGTTACATACACCACGGTTGTGTCAGCTTTTGTAAAAGCGGGGTTGATGG 1412
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1371 ACCCAGATGAAGTTACATACACTACGGTTGTGTCAGCTTTTGTAAATGCAGGGTTGATGG 1430
Query 1413 ATAGAGCACGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTA 1472
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ATAGAGCAAGACAAGTGTTAGCCGAGATGGCTCGGATGGGTGTTCCTGCAAATAGGATTA 1490
Query 1473 CTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CTTATAATGTTCTGCTCAAAGGATATTGTAAGCAGTTGCAGATAGATAGGGCAGAGGATT 1550
Query 1533 TACTAAGAGAGATGGCTGAAGATGCAGGGATTGAGCCAGATGTGGTTTCCTATAACATCA 1592
|||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 1551 TACTAAGAGAGATGACTGAAGATGCGGGGATCGAGCCAGACGTGGTTTCCTATAACATTA 1610
Query 1593 TAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAA 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TAATAGATGGATGCATTCTTATAGATGATAGCGCAGGAGCTCTAGCGTTTTTCAATGAAA 1670
Query 1653 TGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTG 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TGAGAACGAGAGGGATTGCACCAACTAAGATTAGTTACACAACTTTGATGAAGGCTTTTG 1730
Query 1713 CAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAA 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CAATGTCGGGGCAACCCAAGTTGGCGAATAGGGTGTTTGATGAGATGATGAATGATCCAA 1790
Query 1773 GGGTCAAAGTTGATTTGATCGCTTGGAACATGTTGGTTGAAGGGTATTGCAGGCTAGGTT 1832
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1791 GGGTCAAAGTTGATTTGATCGCGTGGAACATGTTGGTTGAAGGGTACTGCAGGCTAGGTT 1850
Query 1833 TGATTGAAGATGCTCAGAGAGTAGTTTCAAGAATGAAAGAAAACGGGTTTTACCCAAATG 1892
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1851 TGATTGAGGATGCTCAGAGAGTAGTGTCAAGAATGAAAGAAAACGGGTTTTACCCAAATG 1910
Query 1893 TGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCTCTGGCGAGGAAACCTGGTGAGGCGC 1952
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |
Sbjct 1911 TGGCAACCTATGGGAGTCTAGCCAATGGGGTTTCGCAGGCGAGGAAACCTGGTGATGCTC 1970
Query 1953 TCTTGCTTTGGAAGGAAATAAAGGAAAGGTGTGAGGTGAAAAAGAAAGAAGCACCTTCAG 2012
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1971 TCTTGCTTTGGAAGGAGATAAAGGAAAGGTGTGCGGTGAAAAAGAAAGAAGCACCTTCAG 2030
Query 2013 ATTCTTCTTCAGATCCTTCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACGC 2072
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2031 ATTCTTCTTCAGATCCTGCTCCTCCGATGCTGAAACCAGATGAAGGGTTGTTAGATACAC 2090
Query 2073 TAGCGGATATATGTGTCAGGGCTGCGTTTTTCAAGAAGGCATTGGAGATAATCGCATGTA 2132
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2091 TAGCGGATATATGTGTCAGGGCTGCTTTTTTCAAGAAGGCATTGGAGATAATCGCATGTA 2150
Query 2133 TGGAAGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGC 2192
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 TGGAGGAGAATGGGATACCTCCGAATAAGACTAAGTACAAGAAGATCTATGTGGAGATGC 2210
Query 2193 ACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAAC 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 ACTCGAGGATGTTCACTAGCAAACATGCTTCACAAGCCAGAATAGATAGGCGGGTAGAAC 2270
Query 2253 GAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTACCTAATTCTTACTATGGAA 2312
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2271 GAAAGAGAGCGGCTGAAGCTTTCAAGTTTTGGCTCGGTTTGCCTAATTCTTATTATGGAA 2330
Query 2313 GTGAATGGAAGTTAGGTCCAAGAGAAGACTAG 2344
||||||||||||||||||||||||||||||||
Sbjct 2331 GTGAATGGAAGTTAGGTCCAAGAGAAGACTAG 2362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116364863310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5