BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478288
Length=2446
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09670.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 2052 0.0
> AT3G09670.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr3:2966375-2968972 FORWARD LENGTH=2496
Length=2496
Score = 2052 bits (1111), Expect = 0.0
Identities = 1322/1419 (93%), Gaps = 34/1419 (2%)
Strand=Plus/Plus
Query 36 AAAACGAGAAACCCGTTTCTGGTTAGATTTGACGTCTTCGTTTACTTCA-TTCAAGAAAC 94
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||
Sbjct 31 AAAACGAGAAACCCGTTTCTGGTTCGATTTGACGTCTTCGTTTACTTCATTTCTATAAAC 90
Query 95 TAGCTCCCGCCGCCGGAAAATTCGCTGTTTATCAAGACCGTCACCGGAGGTTTGTTGGTT 154
|||||||||||||||||||||||||||| |||| ||||| ||| | | | ||||
Sbjct 91 GAGCTCCCGCCGCCGGAAAATTCGCTGTTCATCACCACCGTGACC--A-G--AG--GGTT 143
Query 155 TTGTTTTGGTACTGCTTATGTCGACGGAATCAGAGCGTGTTGAATCAGTCTCAGAGGCTA 214
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 144 TTGTTTTGGTACTGCTTATGTCGACGGAATCAGAACGTATTGAATCAGTCTCAGAGGCTA 203
Query 215 GTGCGTCGAGGTTT-GAGGCT-GGAAATGATAAAATGTCTGAAACCCTAGCTGGTCAAGC 272
|||||||| |||| |||| | ||||||||| ||||||||||| ||||||||||||||||
Sbjct 204 ATGCGTCGA-GTTTAGAGG-TCGGAAATGATCAAATGTCTGAAGCCCTAGCTGGTCAAGC 261
Query 273 TCAGGAGCTGAAAACAAATGGAGATGATAAAGAAGGAAGCGGCAACTTAGCTTCAGCTGC 332
||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 262 TCAGGAGCTGAAAACAATTGGAGATGATAAAGAAGGATGCGGCAACTTTGCTTCAGCTGG 321
Query 333 TGATAATGGGATGGAGAAAGTAAATGGATTTACTGATCTGGAGAAGGAAACTGAATCTGT 392
|||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||
Sbjct 322 TGATAATGGGATGGAGAAAGTAAATGGATTTACTAATCTTGTTAAGGAAACGGAATCTGT 381
Query 393 AAATGGAGGGTTAGATCTAGGCACTGGAACCGAAAATGTTGGTGGAGAGAGTAACGGAAG 452
|||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 382 AAATGGAGAGTTAGATCTAGGCACTAGAACCGAAAATGTAGGTGGAGAGAGTAACCAAAG 441
Query 453 TGAGAACAAGGTCCTAGTAGATAGCGAAGAGGT-ATTGATGGTAGAGGAAAGGGAGCTT- 510
||| || ||||| |||||||||||||||||||| | ||||||||||| |||||| ||||
Sbjct 442 TGACAAGAAGGTTCTAGTAGATAGCGAAGAGGTCA-TGATGGTAGAGAAAAGGGGGCTTC 500
Query 511 TTGATTGAGAAGGAAATGGAACCTGACATGGTCTGTTCTCATGGCGCTGATCTTAGTGAT 570
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 501 TTG-TTGAGAAGGAAGTGGAACCTGACATGGTCTGTTCTCATGGCGCTGATCTCAGTGAT 559
Query 571 GTGAAGG--T-T--T------CTGG-TAGTGAAGACCTTGGTGAGGATAGAAAACTCGAT 618
||||||| | | | |||| |||||||||||||| | |||||||||||| ||||
Sbjct 560 GTGAAGGTTTCTGATGGCAGACTGGATAGTGAAGACCTTGTTCAGGATAGAAAACCCGAT 619
Query 619 GGCTTAGAAAAGCGAGGAACACAAGTTGAGGACTTGGATGTTGTATGTTTTATGGGTTTA 678
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 620 GGCTTAGAAAAGCAAGGAACAAAAGTTGAGGACTTGGATGTTGTATGTTTTATGGGTTTA 679
Query 679 GAAGCGCATGAGAGCAAGGATAGA-AGTATTTTGGATGATGATAATTTCCC-TGTAACTG 736
||| ||||||||||||||||| || ||||||||||||||||| |||| ||| |||| |||
Sbjct 680 GAACCGCATGAGAGCAAGGAT-GAGAGTATTTTGGATGATGA-AATTGCCCATGTAGCTG 737
Query 737 CGAAGGTGAAGATCTCTGACTCAGATTTGGTTTGGGCTAAAGTAAGGAGCCATCCGTGGT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CGAAGGTGAAGATCTCTGACTCAGATTTGGTTTGGGCTAAAGTAAGGAGCCATCCGTGGT 797
Query 797 GGCCTGGACAGGTGTTTGATGCCTCGGCTGCAACAGACAAGGCGAAGAAGTATTTCAAGA 856
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 798 GGCCTGGACAGGTGTTTGATGCCTCGGCTGCAACAGACAAGGCGAAGAAGCATTTCAAGA 857
Query 857 AAGGAAGTTTCTTAGTAACTTATTTTGGAGATTGCACCTTTGCTTGGAATGATGCATCAC 916
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 858 AAGGAAGTTTCTTAGTAACTTATTTTGGAGATTGCACCTTTGCTTGGAATGAGGCGTCAC 917
Query 917 GGATAAAGCCTTTTCGACAGCACTTCCCCCAAATGGCAAAGCAAAGTAGTCTACCCGATT 976
|||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||
Sbjct 918 GGATTAAGCCTTTTCGACAGCATTTCTCCCAAATGGCAAAGCAGAGTAGTCTACCTGATT 977
Query 977 TTATTGATGCTATTGATTTTGCTTTAGAAGAGGTATCAAGAAGGATAGAGTTTGGTTTAG 1036
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 978 TTATTGATGCTATTGATTTTGCGTTAGAAGAGGTATCAAGAAGGATAGAGTTTGGTTTAG 1037
Query 1037 CTTGTTCTTGTATCTCAGAGGAAGTCTATCAGAAGATCAAGACTCAGAATATAATCAATC 1096
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 CTTGTTCTTGTATCTCAGAGGAAGTCTATCAGAAGATCAAGACTCAGAATGTAATCAATC 1097
Query 1097 CTGGAATCCGAGAAGATTCAAGCTCAATACACGGTGGAGACAAGGTCTCAAGTGCAGTCT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTGGAATCCGAGAAGATTCAAGCTCAATACACGGTGGAGACAAGGTCTCAAGTGCAGTCT 1157
Query 1157 TCTTTGAACCTGCAGACCTTGTGGGATATGTGAAGCGTTTAGCATGTTCTCCTACCTATG 1216
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1158 TCTTTGAACCTGCAAACCTTGTGGGATATGTGAAGCGTTTAGCATGCTCTCCTAGCTATG 1217
Query 1217 ATGCTACTGATGCGCTGCAGCTTGTAAGTCAGAGAGCACAATTATTAGCTTTTAATCGCT 1276
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1218 ATGCTACTGATGCGCTGCAGCTTGTAAGTCAGAGAGCACAGTTATTAGCTTTTAATCGCT 1277
Query 1277 GGAAAGGCTACACTGACCTCCCTGAGTTTGTGACACTCCAGGGGTCAGTAGAGTCTGCAC 1336
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1278 GGAAAGGCTATACTGACCTCCCCGAGTTTATGACACTCCAGGGGTCAGTAGAGTCTGCAC 1337
Query 1337 CCAAGATTTCTCCTGCAGAAGAGAAAAGTAGCTTAGTGGAAGTCTCTGATCTTGAACCGA 1396
||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
Sbjct 1338 CCAAGATTTCTCCTGCAGAAGAGCAAAGTAGCTTAGTGGAAGTTTCTGATCCTGAACC-A 1396
Query 1397 A-AAAGAGTAAACAAGTTTATACTAAAAGAAGAAAGACA 1434
| |||||||||||||||||||||||||||||||||||||
Sbjct 1397 ACAAAGAGTAAACAAGTTTATACTAAAAGAAGAAAGACA 1435
Score = 1334 bits (722), Expect = 0.0
Identities = 928/1022 (91%), Gaps = 35/1022 (3%)
Strand=Plus/Plus
Query 1442 AAGATGACTGTAAACACGATGGAGTGTTTGAATATGAAGAAACTACTGTTCCAAAGAAAA 1501
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1485 AAGGTGACTGTAAACACGATGGAGTGTTTGAATATGAAGAAACTATTGTTCCAAAGAAAA 1544
Query 1502 AGGAGAAAACTTTGGCAGAGTTCATTGCTGAGAAACGCTTAAGCAGACATAATAGGAACA 1561
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1545 AGGAGAAAACTTTGGCAGAGTTCATTGCTGAGAAACGCGTAAGCAGACATAATGGGAACA 1604
Query 1562 CATCACATGAAAATTCTGGTAAAGTTCCGCATTGCAAAAAGAAACGCAAGGTTGTGCAGT 1621
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1605 CATCACATGAAAAGTCTGGTAATGTTCCGCATTGCGAAAAGAAACGCAAGGTTGTGCAGT 1664
Query 1622 CAAAAGTTCCCAAATCCACGAAAAAGATTAAGGAAAACCTGCAAACAGAGGATCCAGGAT 1681
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1665 CAAAAGTTCCCAAGTCCACGAAAAAGATTAAGGCAAACCTGCAAACAGAGGATCCAGGAT 1724
Query 1682 CACCAATTTCTCACAAAAATGATCGAAAAAACAGTCTGTCTGCAGGTGATAAGATAACAC 1741
| ||| |||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||
Sbjct 1725 CTCCAGTTTCTCCCAAAAATGATCGAAAAAATAATTTGTCTGCTGGTGATAAGATTACAC 1784
Query 1742 CAGAGAAAGCTAGAAAAAGTTTCGGAATTGGGGCAAGCATATTGAAAGTAGCAAACCAGA 1801
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1785 CACAGAAAGCTAGAAAAAGTTTCGGAATTGGGGCAAGCATATTGAAAGTGGCAAACCAGA 1844
Query 1802 TGCATTGTTCAACACCTACCCGACTCATACCTTGCAATGATTCGACCTCCAAAAAGGCAG 1861
|||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1845 TGCATTGTTCAACACCAACCAGACTCTTACCTTGCAGTGATTCGACCTCCAAAAAGGCAG 1904
Query 1862 CCAAGAGCAATGGCAATGGAAAAAGTCTTCAGGAGAAACCTAAAGCCGAAGCATTATCTG 1921
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1905 CCAAGAGCAATGGCAGTGGAAAGAGTCTTCAGGAGAAACCTAAAGCCGAAGCATTATCAG 1964
Query 1922 AAAGAGAGATTTCTCCTTCAACTAATGAAACACTTTCAAGCCCCCACGCTGCTTCTGTTT 1981
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1965 CAAGAGAAATTTCTCCTTCAACTA------CACTTTCAAGCCCTCACGCTGCTTCTGTTA 2018
Query 1982 CCAAAACCCCAAGTGGAAAATCCAATTCCATCAGCGTAGACCACCAAC-TATCCGGAGAA 2040
|||||||| ||||||| ||||||||||| ||||| |||||||| ||| |||||||||||
Sbjct 2019 CCAAAACCACAAGTGGGAAATCCAATTCTGTCAGCCTAGACCAC-AACCTATCCGGAGAA 2077
Query 2041 ATTGAACAGGTCATAAAGGAAGCTCCTAGTACTAACCTTGTGGAGGACCCGATGTTGGAG 2100
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 CTTGATCAGGTCAGAAAGGAAGCTCCTAGTACTAACCTTGTGGAGGACCCGATGTTGGAG 2137
Query 2101 TCTAGGGACTTGAAAGACTCTGCTAAAGAGCAGATGGTACATGAGGATAAGAAAGAAGCT 2160
||||| ||||||||||||||| |||| |||||| | ||||||||||||||||||||||||
Sbjct 2138 TCTAGAGACTTGAAAGACTCTTCTAAGGAGCAGGTCGTACATGAGGATAAGAAAGAAGCT 2197
Query 2161 GCAAATATTGCGGATGAGAAAACTATTATTAAGGACAGCAATCTAATTGGGGAGAAAATC 2220
|||||| | |||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 2198 GCAAATGTAGCGGATGAGAAATCTATTAT---GGACAGCAATCTAACCGGGGAGAAAATC 2254
Query 2221 AGTGGCTTGGACTTGAAACAGCAGCC-A--AACAAGAACTGC-C--------CTGATAGT 2268
|||||||||||||||| | ||||||| | |||||||||||| | ||||||||
Sbjct 2255 AGTGGCTTGGACTTGAGAGAGCAGCCGAGTAACAAGAACTGCTCTGGTGGATCTGATAGT 2314
Query 2269 TCCAAGGAAGATGTTTCTGCAGAGTAGGAAGGCTCAGCATCAGCGCCTAACCCACTAATA 2328
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2315 TGCAAGGAAGATGTTTCTGCAGAGTAGGAAGGCTCAGCATCAGCGTCTAACCCACTAATA 2374
Query 2329 CAGATTTTT-TAAAAATCGTGTCCGGTTCTTGTTAGTACTTAGTACCCAAGAGTGGAATA 2387
||||| ||| ||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 2375 CAGATCTTTCTAAAA-TCGAGTCCGGTTCTTGTTAGTAC------CC-AAGAGTGGAATA 2426
Query 2388 TACCTTGTAGCTG-ACT-TCT-CTCTTTCGAAGTTTAGAATTGTATGATTTGATCAGAGT 2444
|||||| ||| || | | ||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 2427 TACCTTTTAGATGGATTCTCTTCTCTTTCAAAGTTTAGAATTGTATGATTTAATCAGAGT 2486
Query 2445 TG 2446
||
Sbjct 2487 TG 2488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121485318900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5