BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478290
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09680.1 | Symbols: | Ribosomal protein S12/S23 family prot... 811 0.0
AT5G02960.1 | Symbols: | Ribosomal protein S12/S23 family prot... 580 3e-165
> AT3G09680.1 | Symbols: | Ribosomal protein S12/S23 family protein
| chr3:2969045-2970371 REVERSE LENGTH=661
Length=661
Score = 811 bits (439), Expect = 0.0
Identities = 485/508 (95%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 1 AACTTAAAAGGTCGCGCCTTTAGCAGTTTCAGCTCATCTCTCTACTTTGTCTCTCGCGCC 60
||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 12 AACTTAAAACGTCGCGCCTTTAGCAGTTTCAGCTCATCTCTCGACTTTTTCACTCGCGCC 71
Query 61 GTCGTCAATATGGGTAAGCCACGTGGTATGGGAGCTGGGCGCAAGCTGAAGCGGCTCCGG 120
|||||||| ||||||||| ||||||||||||||||||| |||||||| |||| ||| |||
Sbjct 72 GTCGTCAACATGGGTAAGACACGTGGTATGGGAGCTGGTCGCAAGCTTAAGCAGCTTCGG 131
Query 121 ATTAATCAGAAGTGGGCCGACAAGTATTACAAGAAGTCTCGCCAAGGCAACGAGTGGAAG 180
|||| ||||| |||||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct 132 ATTACTCAGAGGTGGGCGGACAAGCATTACAAGAAGTCTAATCGAGGCAACGAGTGGAAG 191
Query 181 AAGCCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGCCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAG 251
Query 241 GCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGTTGATCAAGAATGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGTTGATCAAGAATGGT 311
Query 301 AAAAAGATTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGAT 360
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 312 AAAAAGATTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATTGAAGAAAATGAC 371
Query 361 GAGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGTGATATTCCCGGAGTT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 372 GAGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGAGATATTCCCGGAGTT 431
Query 421 AGGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAG 491
Query 481 GAGAAGCCTAGGTCTTGAGCTCTACTAC 508
||||||||||||||||||||||||||||
Sbjct 492 GAGAAGCCTAGGTCTTGAGCTCTACTAC 519
> AT5G02960.1 | Symbols: | Ribosomal protein S12/S23 family protein
| chr5:693079-694515 REVERSE LENGTH=749
Length=749
Score = 580 bits (314), Expect = 3e-165
Identities = 394/433 (91%), Gaps = 4/433 (1%)
Strand=Plus/Plus
Query 70 ATGGGTAAGCCACGTGGTATGGGAGCTGGGCGCAAGCTGAAGCGGCTCCGGATTAATCAG 129
||||||||| |||||||||||||||||||||| ||||||||| | ||||| ||||| |||
Sbjct 120 ATGGGTAAGACACGTGGTATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATTAACCAG 179
Query 130 AAGTGGGCCGACAAGTATTACAAGAAGTCTCGCCAAGGCAACGAGTGGAAGAAGCCTTTT 189
| |||||| |||||| | ||||||||||||| | || || ||||||||||||||||||
Sbjct 180 AGGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAATGAGTGGAAGAAGCCTTTT 239
Query 190 GCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAG 249
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GCTGGTTCTTCTCACGCTAAAGGAATTGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAG 299
Query 250 CCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAG-TTGATCAAGAATGGTAAA-AAGA 307
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 300 CCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTT-ATCAAGAATGG-AAAGAAGA 357
Query 308 TTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATGAGGTGT 367
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 358 TTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATCGAGGAAAACGATGAGGTCT 417
Query 368 TGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGTGATATTCCCGGAGTTAGGTTCA 427
|||||||||||||||| ||||| ||||| || || || ||||||||||||||||||||||
Sbjct 418 TGATTGCTGGATTTGGTCGTAAGGGTCACGCTGTGGGAGATATTCCCGGAGTTAGGTTCA 477
Query 428 AAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAGGAGAAGC 487
| || |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 478 AGGTCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGC 537
Query 488 CTAGGTCTTGAGC 500
| || |||| |||
Sbjct 538 CAAGATCTTAAGC 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5