BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478294
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosp... 2878 0.0
> AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980221-2983618
REVERSE LENGTH=2049
Length=2049
Score = 2878 bits (1558), Expect = 0.0
Identities = 1841/1969 (93%), Gaps = 54/1969 (3%)
Strand=Plus/Plus
Query 58 TTGTTACTATTATTGCTGCCTTTTCCTCTTCC-CCAGAAACGCTCTCTGTCTCTATCT-- 114
||||||| |||||||||||||||||||| ||| || |||||||||||| ||||||| |
Sbjct 103 TTGTTACCATTATTGCTGCCTTTTCCTC-TCCTCCGGAAACGCTCTCTTTCTCTATTTAG 161
Query 115 ATGGAGAAAAGCTCCTATTTTTTGTTTGGTGGAACAAACTTCAATAAGAAGAAGTTTGCT 174
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 162 ATGGAGAAAAGCTCATATTTTCTGTTTGGTGGAACAAACTTCAATAAGAAGAAGTTTGCT 221
Query 175 CCAGATTTTGCTAAGTTTAAGAATTGTACGGAGGATGATGATTCCAATAAGAAAGTGAAC 234
|| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 CCTGATTTTGCTAAATTCAAGAATTCTACGGAGGATGATGATTCCAATAAGAAAGTGAAC 281
Query 235 TTCTTTGT-G--GAAGAAGAGGACACTGAAGAG-C--AGGAGGAGAAAGTTATTGTGTCC 288
|||||||| | |||||||||||||||||| || | ||| |||||||||||||||||||
Sbjct 282 TTCTTTGTGGAAGAAGAAGAGGACACTGAACAGCCGGAGGCGGAGAAAGTTATTGTGTCC 341
Query 289 TCTAAGAAGAGGAAACGAAGATCTTCTAATTCCGTGCCAGTTGAAGGATTTGATGTGTTC 348
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 342 TCTAAGAAGAGGAAACGAAGATCTTCTAATTCTGTGCCAGTTGAAGGATTCGATGTGTTC 401
Query 349 AAGAGCTCAAAGAAGGCACTTGCTAAAGGTAAAGCAGAAGAAGGAAA-CACAAAGAATGA 407
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 402 AAGAGCTCAAAGAAGGCACGTGCTAAAGGTAAAGCAGAAGAA-CAAATCACAAAGAATGA 460
Query 408 TATTTTAGAAG-ATCCCAAGAAGGAACTTAATCGTCAAATAGAGCGAGATGCTTTGTCGA 466
||| ||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 461 GATTGTAG-AGAATCCCAAGAAGGAACTTAATCGTCAAATGGAGCGAGATGCTTTGTCGA 519
Query 467 GGAAACAGTACAACATTCATGTTTCCGGTAACAATATTCCACCTCCGCTTAAAAGCTTT- 525
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 520 GGAAACAGTACAGCATTCATGTTTCCGGTAACAATATTCCACCGCCGCTTAAAAG-TTTC 578
Query 526 GCAGAGTTATCATCAAGGTATGGCTGTAAAGAATATATATTACGCAATTTGGCTGAACTA 585
|||||||| ||||| |||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 579 GCAGAGTTGTCATCCAGGTATGGCTGTGAAGGATACATATTACGCAATTTGGCTGAACTA 638
Query 586 GGATTTAAAGAGCCTACCCCCATCCAAAGACAGGCTATTCCAGTTCTCCTATCGGGTCGT 645
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 639 GGATTTAAAGAGCCTACCCCAATCCAAAGACAGGCTATTCCAATTCTCCTATCGGGTCGT 698
Query 646 GAATGCTTTGCCTGTGCTCCGACTGGGTCAGGAAAAACCGTTGCTTTTATTTGTCCCATG 705
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 699 GAATGCTTTGCCTGTGCTCCGACTGGGTCAGGAAAAACCTTTGCTTTTATTTGTCCCATG 758
Query 706 CTTATAAAACTCAAGCGCCCTTCAACAGATGGAATAAGAGCAGTTATCCTTTCTCCTGCT 765
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 759 CTTATAAAACTCAAGCGCCCTTCAACTGATGGAATAAGAGCTGTTATCCTTTCTCCTGCT 818
Query 766 CGGGAACTGGCTGCCCAAACAGCTAGAGAAGGAAAGAAACTTATTAAAGGAAGCAAGTTC 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 819 CGGGAACTGGCTGCCCAAACAGCTAGAGAAGGAAAGAAACTTATTAAAGGAAGCAATTTC 878
Query 826 CACATTAGATTGATGACTAAACCTCTTGTCAAAACAGCTGACTTCTCAAAGCTGCGGTGT 885
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 879 CACATTAGATTGATGACTAAACCCCTTGTCAAAACAGCTGACTTCTCAAAGCTGTGGTGT 938
Query 886 GATGTTCTCATATCAACGCCGATGCGGCTGAAAAGAGCAATCAAGGCTAAAAAGATTGAC 945
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 939 GATGTTCTCATATCAACGCCGATGCGGTTGAAAAGAGCAATCAAGGCTAAAAAGATTGAC 998
Query 946 TTAAGCAAGGTTGAGTACCTTGTCCTTGATGAATCTGACAAGCTGTTTGAGCAGAGCTTG 1005
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTAAGCAAGGTCGAGTACCTTGTCCTTGATGAATCTGACAAGCTGTTTGAGCAGAGCTTG 1058
Query 1006 TTAAAGCAGATAGATTGTGTGGTTAAGGCTTGTTCAAACCCTTCGATCATACGTTCATTG 1065
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1059 TTAAAGCAGATAGATTGTGTGGTTAAGGCTTGTTCAAATCCTTCGATCATACGTTCATTG 1118
Query 1066 TTCAGTGCTACTTTGCCCGATTCTGTTGAGGAACTTGCACGTTCCATAATGCATGATGCT 1125
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1119 TTCAGTGCTACTTTGCCCGATTCTGTTGAAGAACTTGCACGTTCCATAATGCATGATGCT 1178
Query 1126 GTTCGTGTGATCATTGGCCGAAAGAACACAGCGTCTGAAACCGTCAAGCAAAAGCTGGTT 1185
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1179 GTTCGTGTTATCATTGGCCGAAAAAACACAGCATCTGAAACCGTCAAGCAAAAGCTGGTT 1238
Query 1186 TTTGCTGGAACTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGCTTTGCAGAGAGTCTG 1245
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGCTTTGCAGAGAGTCTG 1298
Query 1246 AATCCACCGGTACTGATCTTTGTACAAAGCAAAGAACGAGCAAAGGAACTCTATGATGAA 1305
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1299 AATCCACCGGTACTGATCTTTGTACAAAGCAAAGAACGAGCAAAAGAACTCTATGATGAA 1358
Query 1306 CTGAAATGTGAAAACATCAGAGCCGGGGTCATCCATTCCGATCTCCCTCCGGGAGAGCGG 1365
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1359 CTGAAATGTGAAAACATCAGAGCCGGAGTCATCCATTCCGATCTCCCTCCGGGAGAGCGG 1418
Query 1366 GAAAACGCAGTTGATCAATTCAGAGCGGGCGAAAAATGGGTTTTGATAGCTACTGATGTG 1425
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1419 GAAAATGCAGTTGATCAATTCAGAGCGGGAGAAAAATGGGTTTTGATAGCCACTGATGTG 1478
Query 1426 ATTGCTAGAGGTATGGATTTCAAAGGCATCAACTGCGTGATAAACTATGATTTCCCGGAT 1485
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ATTGCCAGAGGTATGGATTTCAAAGGCATCAACTGCGTGATAAACTATGATTTCCCGGAT 1538
Query 1486 TCAGCTTCTGCATACATCCACAGGATTGGTCGGTCTGGGAGAGCGGGAAGGAGCGGAGAA 1545
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1539 TCAGCTTCTGCATACATCCACAGGATTGGACGGTCTGGGAGAGCGGGAAGGAGCGGAGAA 1598
Query 1546 GCGATAACTTTCTACACGGAACAGGATGTACCTTTCCTTAGGAACATAGCCAACATGATG 1605
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||
Sbjct 1599 GCGATAACTTTCTACACGGAACAAGATGTGCCTTTCCTAAGGAACATAGCCAACACAATG 1658
Query 1606 ATGTCATCAGGCTGTGAGGTTCCGTCGTGGATCATGTCTTTGAAGAAGAAGAAGTGGAGG 1665
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1659 ATGTCATCAGGCTGTGAGGTTCCATCGTGGATCATGTCTTTGAAGAAGAAGAAATGGAGG 1718
Query 1666 AAGCATAGGCCGAGACGTGATTCTATATCTACTCAACCAAAAGCCGATAAAAACGATAAA 1725
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1719 AAGCATAGGCCGAGACGTGATTCTATATCTACTAAACCAAAAGCCGATAAAAACGATACA 1778
Query 1726 GATGTGTAACTTCAAATTTTGTGTTTTCC-TTATCTTGTTGTTGTTACATTGATGAATTA 1784
|||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1779 GATGAGTAACCTCAAATTTTGTCTTTTATATT-TCTTGTTGTTGTTACATTGATGAATTA 1837
Query 1785 GTCTTGGTCTTTCGGACCCAAA-CACTTTACA--G--TATG--T-GG----CTAG-A-A- 1829
|||||||||||| ||| ||||| ||||||||| | || | | || |||| | |
Sbjct 1838 GTCTTGGTCTTTTGGATCCAAAACACTTTACACTGGCTA-GAATCGGGAATCTAGTAGAA 1896
Query 1830 TCGAACGTAGTTGTCACTTGGATCGTACTACAAAATACATATATGTA-CTAAAAC-TAGT 1887
|||||| |||||||||||||||||||||||| |||||||||| ||| || |||| ||||
Sbjct 1897 TCGAACTTAGTTGTCACTTGGATCGTACTACGAAATACATAT--GTAACTCAAACCTAGT 1954
Query 1888 TACTATCCGATTTTGAGACTTCAAGGTTTTTCATTTTGATGTATTCTCAGATTCAATGAT 1947
|||||| ||||| ||||||||| |||||||||| | | | |||||||||||
Sbjct 1955 TACTATTCGATTGTGAGACTTCC-GGTTTTTCAT---G-T-----CG--GATTCAATGAT 2002
Query 1948 TTCTTAAGATACATACAATATACCATAAGTTTTGGTTTGGTATAATTTT 1996
|||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 2003 TTCTTAAGATGCAT----TATACCATAAGTTTTGGTTTGGTATAACTTT 2047
Score = 75.0 bits (40), Expect = 3e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 14 TCTGCTCGGCATCTATTCGCCGTCGTCAGTGTCATCGCCGGCGTTT 59
||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 42 TCTTCTCGGTATCTATTCGCCGTCGTCAGTGTCATCGCCGGCGTTT 87
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98895073650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5