BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478296

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09735.1 | Symbols:  | S1FA-like DNA-binding protein | chr3:...   697    0.0  


> AT3G09735.1 | Symbols:  | S1FA-like DNA-binding protein | chr3:2986626-2987969 
REVERSE LENGTH=521
Length=521

 Score =  697 bits (377),  Expect = 0.0
 Identities = 440/469 (94%), Gaps = 9/469 (2%)
 Strand=Plus/Plus

Query  1    TTTCTTGGCAAAACTCGTCTTCAAGCTGTCTTATATATTCTCCGGCGAGTGGTGCTGATA  60
            |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct  27   TTTCTTGGCAAAACTCGTCTTCAAGCTGTC-TATATTTTCTCCGGCGAGCGGTGCTGATA  85

Query  61   ATCTCGTAGCTCCGAAGCGCCGCCATGGCCGAAGAATTTGATGGAAAAATCGAAAGCAAA  120
            | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  86   ACCTCGTAGCTCCGAAACGCCGCCATGGCCGCAGAATTTGATGGAAAAATCGAAAGCAAA  145

Query  121  GGTCTAAACCCGGGACTGATTGTCCTTCTTGTAATTGGAGGGTTGCTAGTGACATTCCTT  180
            || ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct  146  GGGCTAAACCCGGGACTGATCGTCCTTCTTGTAATAGGAGGGTTGCTACTGACATTCCTT  205

Query  181  GTAGGAAACTTCATCCTTTACACATACGCACagaagaatttacctccgaggaagaagaaa  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  GTAGGAAACTTCATCCTTTACACATACGCACAGAAGAATTTACCTCCGAGGAAGAAGAAA  265

Query  241  -ccgctttctaagaagaagatgaagaaagagaagatgaagCAAGGCGTCCAAGTTCCTGG  299
             ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  CCCG-TTTCTAAGAAGAAGATGAAGAAAGAGAAGATGAAGCAAGGCGTCCAAGTTCCTGG  324

Query  300  CGAGTAGCTTTTGCTATATGTAGTCGGGATTATCCTTTGATGATAA-TCACTTTGTTGGA  358
            ||||||||||||| ||||||| |||||||||||||||||||||||| ||||| || ||||
Sbjct  325  CGAGTAGCTTTTGTTATATGTTGTCGGGATTATCCTTTGATGATAACTCACTCTGCTGGA  384

Query  359  CTAGAAATTATATGACTCTTTTACTCTTTAGTTTTTA-ATGTTTTCGATGTAGCATG-AT  416
            |||||| || ||||||||  |||||| |||||||||  ||||||||||||||||||| ||
Sbjct  385  CTAGAACTTGTATGACTCCGTTACTCATTAGTTTTTTGATGTTTTCGATGTAGCATGCAT  444

Query  417  -AT-TTT-CTTGAGTTGACAATCTATAAGCTTTGCTGAGATAATTTCAT  462
             || ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct  445  GATATTTTCTTGAGTTGACAATCTATAAGCTTTACTGAGATAATTTCAT  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5