BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478298
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3... 2641 0.0
AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5... 448 1e-124
> AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3:2992654-2995634
REVERSE LENGTH=1980
Length=1980
Score = 2641 bits (1430), Expect = 0.0
Identities = 1609/1694 (95%), Gaps = 17/1694 (1%)
Strand=Plus/Plus
Query 99 AGATTCTTCTTCTCCTCTGCTTTTCTATTTTCTGGGAGCTCGATGGTGGATGATAAAGCT 158
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 142 AGATTCTTCTTCTCCTCTGCTTTTCTATTCTCTGGGAGCTCGATGATGGATGATAAAGCT 201
Query 159 CGCCAACAAGAAGAACAACATGGGTCTCACCAACATCATCATTCTCCTCTGCAAATGGAT 218
||| || |||||||||| |||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 202 CGCAAAGAAGAAGAACATCATGTGTCTCACCAACATAATCATTCTCCTCTGCAAAGGGAT 261
Query 219 GGAAATTCTGCTGAGATAGCAGAAGAACAAGAGCTATCATCACCGGGCCGAGACCTATGG 278
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 262 GGAAATTCTGCTGAGATTGCACAAGGACAAGAGCTATCATCACCGGGCCGAGACCTATGG 321
Query 279 AGGCGAGGTCTTGTGTTAGATTTACCATCAACAACACCTCAAGATACTACAAGAGATGAT 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 322 AGGCGAGGTCTTGTGTTAGATTTACCATCAACAACACCTGAAGATACTACAAGAGATGAT 381
Query 339 CTTTTGAGACGAAATGCATCTCTAACTTCAAGTCCTGTTGCCAAAAGAGTCAACTTTTCT 398
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 382 CTTTTTAGACGAAATGCATCTTTAACTTCAAGTCCTGTTGCCAAAAGAGTCAACTTTTCT 441
Query 399 CCAATGTCGAGCCCTAGAATCGGGCAACGTGCTGCATCCTTGAGTCC--CTCCTCCT-CT 455
|||||||| ||||||||| |||| ||||||| ||||||||||||||| || || || ||
Sbjct 442 CCAATGTCCAGCCCTAGAGTCGGACAACGTGGTGCATCCTTGAGTCCTTCTTCTTCTACT 501
Query 456 TCTTCGTCATCAAGAAACAAACCTAATAGCCTGAAGAATCTAATCCCCAAGTTAAGCTTC 515
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TCTTCTTCTTCAAGAAACAAACCTAATAGCCTGAAGAATCTAATCCCCAAGTTAAGCTTT 561
Query 516 AAGAACCGGAACAGC----A--ATAATGTGGATATCGAGAAAGCCGCGGAGTTGGGCTTT 569
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 562 AAGAACCGGAACAGCAATAACGATAATGTGGATATCGAGAAAGCCGCGGATTTGGGCTTT 621
Query 570 GTGTCCTCCCCGTCTTCAGGAAATGGCAGGGACAGGTCCACATGGACTCTCACTAATATT 629
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 622 GTGTCCTCCCCTTCTTCAGGAAATGGCAGGGACAGGTCTACATGGACTCTCACTAATATT 681
Query 630 TTAACTCCAAGATTGAAGAAAACTGAGTCTCTTCCTGTAACCCCTATAGCTCACTCAAAT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TTAACTCCAAGATTGAAGAAAACTGAGTCTCTTCCTGTAACCCCTATAGCTCACTCAAAT 741
Query 690 CCTGAGTCCACTCACGGGAGATTTGCGGTTGATCTAGTTACTTCCACGAAAAAAGGGCCT 749
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 742 CCTGAGTCCACTCACGGGAGATTTGCCGTTGATCTAGTTACTTCCACGAAAAAAGGGCCT 801
Query 750 CCACTGCCTATCCACCGTTCACGCTCTGTCCCAGCATTCAACAAAGATGGAAGTCTAAGG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 802 CCACTGCCTATCCACCGTTCACGCTCTGTCCCAGCATTCAACAAAGATGGAAGTCAAAGG 861
Query 810 CAATTAGGTGTTTTCCGGGTGATTCCAACTCCAAACATGACGCCAACCAGAAATACTATT 869
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 862 CAATTAGGTGTTTTCCGGGTGATTCCAACTCCAAACATGTCTCCAACCAGAAATACTATT 921
Query 870 AAACTTAACGACGCGAATGTTGATGGCGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGT 929
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 922 AAACTTAACGACGCGAATGTTGATGGAGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGT 981
Query 930 AGAATCTGCCTGGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTATGTGT 989
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 982 AGAATCTGCCTTGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTTTGTGT 1041
Query 990 AGAGGGGAACTAGCTCTTGCCCACAAAGAATGTACAATCAAATGGTTCACCATTAAAGGA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AGAGGGGAACTAGCTCTTGCCCACAAAGAATGTACAATCAAATGGTTCACCATTAAAGGA 1101
Query 1050 AACCGCACATGTGATGTGTGCAAACAAGAGGTTCAGAATCTCCCTGTGACCCTTCTACGC 1109
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1102 AACAGAACATGTGATGTGTGCAAGCAAGAGGTTCAGAATCTCCCTGTGACCCTTCTTCGC 1161
Query 1110 GTGCAGAATTCTCGGGGTAGTATTGGAGCTCCAGATACCGAGGCTGCACACTACAGTTTA 1169
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1162 ATGCAGAATTCTCGGGGTAGTATTGGAGCTCCAGACGCCGAGGCTGCACACTACAGTTTA 1221
Query 1170 TGGCAGGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAG 1229
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1222 TGGCAGGATGTTCCAATTCTTGTGATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAG 1281
Query 1230 CAGCTTCTGCTTACAAAAATGCAATCCGGCGCCATTGCAGTTTCTTTACCATTCTCTTGC 1289
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1282 CAGCTTCTGCTTACAAAAATGCAATCTGGCGCCATTGCAGTTTCTTTACCATTCTCGTGC 1341
Query 1290 GTTCTTGGTCTCTTTGCTTCGATGACGTCAACAACAATGGTGCAGAAGAGATATGTCTGG 1349
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1342 GTTCTTGGTCTTTTTGCTTCGATGACGGCAACAACAATGGTGCCGAAGAGATATGTCTGG 1401
Query 1350 ATTTACGCCACAACTCAGTTCGGTCTTGTTGtttttttCTCTCACGTTTTCTTCACATTG 1409
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1402 ATTTACGCTACAACTCAGTTCGGTCTTGTTGTTTTTTTCTCTCACATTTTCTTCACATTG 1461
Query 1410 GTTCGCATGCAGCCGGTTGTGGCCATTCTCTTAGCCACAATTGTTGGGTTTGGACTCACC 1469
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1462 GTTCGCATGCAGCCGGTTGTGGCCATTCTCTTAGCCACTATCGTTGGGTTTGGACTCACC 1521
Query 1470 ATGAGCGGTACAACAGGTCTAGTCGAGTTTTCAAAATGGAGGAGAAGCAATAGGACAGCT 1529
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1522 ATGAGCGGTACAACAGGTATAGTCGAGTTTTCGAAATGGAGGAGAAGCAATAGGACAGCT 1581
Query 1530 GAACCTCCAAACAGTAGTCAGGTGGATCAACCA-TCGGTTGAGACAACAGATCAGAGCAT 1588
|||| ||||| ||||||||| |||||||||||| | |||||||||||||||||||| |||
Sbjct 1582 GAACTTCCAAGCAGTAGTCAAGTGGATCAACCACT-GGTTGAGACAACAGATCAGAACAT 1640
Query 1589 ATCTGGATCAAGAAACTGAA-GCCAGAGGTCC-TGAATACTAATCATATGTTCCAGTAGC 1646
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1641 TTCTGGATCAAGAAACTGAAAGCCAGAGGTCCGTCAATACTAATCATATGTTCCAGTAGT 1700
Query 1647 GGTGTATGGTATCGAATCAAGTAT--ATCTATTTAGAGATGTGAGAACAGATTGGTCATG 1704
||| |||| | |||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 1701 GGTCTATGATCTCGA-TGGAG-ATCCATCTATTTAGAGATGTGAGAACAGATTGGTCATG 1758
Query 1705 TGAGTTAAGTAGTGATAGTTGACGAGATTAAGGCTCGATTTTGGGGGGTCTCTTTTGTGT 1764
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1759 TGAGTTAAGTAGTGGTAGTTGACGAGATTAAGGCTCGATTTTTGGGGGTCTCTTTTGTGT 1818
Query 1765 GTGATTATGAGTGT 1778
|||| | |||||||
Sbjct 1819 GTGAATGTGAGTGT 1832
Score = 139 bits (75), Expect = 8e-32
Identities = 91/98 (93%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1 ATGATCGATCAGATATCTCAATTTCAGGAACCCAGAAAGAGGGACTTGTCTTTTTCCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGATCGATCAGATATCTCAATTTCAGGAACCCAGAAAGAGGGACTTGTCTTTTACCTCC 60
Query 61 AAAGGGTTCCTGACGTTCGTTTCTTGCCTACAATTTTT 98
|||||||||||| | |||||||| |||||||||||
Sbjct 61 AAAGGGTTCCTG-C---CGTTTCTTTTCTACAATTTTT 94
> AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5:754016-756494
REVERSE LENGTH=1669
Length=1669
Score = 448 bits (242), Expect = 1e-124
Identities = 540/679 (80%), Gaps = 39/679 (6%)
Strand=Plus/Plus
Query 869 TAAACTTAACGACGCGAATGTTGATGGCGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTG 928
|||||| |||| | |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 776 TAAACTCCACGATGAAAATGATGATGGTGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTG 835
Query 929 TAGAATCTGCCTGGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTATGTG 988
||||||||| |||| ||| ||| ||||||| |||||| || |||||||||||||||||
Sbjct 836 TAGAATCTGTATGGTTGAAATGGAAGAAGATGAAGAAGCTTTTAAGATGGAATGTATGTG 895
Query 989 TAGAGGGGAACTAGCTCTTGCCCACAAAGAA-TGTACAATCAAATGGTTCACCATTAAAG 1047
| ||||||||||||||||||||||||| | || || ||||||||||| || |||||||
Sbjct 896 CAAAGGGGAACTAGCTCTTGCCCACAAA-ACGTGCACTATCAAATGGTTTACAATTAAAG 954
Query 1048 GAAACCGCACATGTGATGTGTGCAAACAAGAGGTTCAGAA-TCTCCCTGTGACCCTTCTA 1106
| ||| |||||||||||||| || |||||||| |||| |||||| || |||||||||
Sbjct 955 GGAACATAACATGTGATGTGTGTAAGCAAGAGGTG-AGAAATCTCCCGGTTACCCTTCTA 1013
Query 1107 CGCGTGCAGAATTCTCGGGGTAGTAT-TGGAGCT-CCAG--ATACCGAGGCTGCACACTA 1162
|| |||||| |||||| || | | |||| |||| ||| |||| | ||| |
Sbjct 1014 CGTGTGCAGGATTCTCAAAACCGT-TCTAGAGCAGCCAGGGATATCGAGATTTCACGGTT 1072
Query 1163 CAGT--T-TATGGCAGGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTG 1219
|| | | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAATAATGTATGGCAAGATATTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTG 1132
Query 1220 TTTTCTCGAGCAGCTTCTGCTTACAAAAATGCAATCCGGCGCCATTGCAGTTTCTTTACC 1279
||| || || ||||||||| ||| | | ||| |||| ||||| ||||| | |||||||
Sbjct 1133 TTTCCTTGAACAGCTTCTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACC 1192
Query 1280 ATTCTCTTGCGTTCTTGGTCT-CTTTGCTTCGATGACGTCAACAACAATGGTGCAGAAGA 1338
||||||||| || | ||||| ||| || || |||| ||||||||||||||| ||||||
Sbjct 1193 GTTCTCTTGCATTATCGGTCTTCTT-GCATCAATGATATCAACAACAATGGTGAAGAAGA 1251
Query 1339 GA-TATGTCTGGATTTACGCCACAACTCAGTTCGGTCTTGTTGtttttttCTCTCA-CGT 1396
| ||||| ||||| |||||||| |||||||||| |||| || ||||| |||| | |
Sbjct 1252 -ACTATGTATGGATCTACGCCACCGTTCAGTTCGGTTTTGTGGTCCTTTTCGCTCAGC-T 1309
Query 1397 TTTCTTCACA-TTG---G-TTCGCATG-----CAGCCGGT--TGTGGCCATTCTCTTAGC 1444
||||| || | ||| | || | ||| |||||||| |||| | ||| |||||||
Sbjct 1310 TTTCTACAGAGTTGTAAGATTTG-ATGTGAAGCAGCCGGTAATGTG-C-ATTGTCTTAGC 1366
Query 1445 CACAATTGTTGGG-TTTGGACTCACCATGAGCGGTACAACAGGTCT-AGTCGAGT-TTTC 1501
||| || | | || |||||||||||||||| ||| ||||||| | | | ||||| |||
Sbjct 1367 CACTAT-GATCGGATTTGGACTCACCATGACCGGCACAACAGCTATTAA-CGAGTATTTG 1424
Query 1502 AAAATGGAGGAGAAGCAAT 1520
||| |||||||||||||||
Sbjct 1425 AAA-TGGAGGAGAAGCAAT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5