BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478299
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09770.1 | Symbols: | RING/U-box superfamily protein | chr3... 2067 0.0
AT5G03200.1 | Symbols: | RING/U-box superfamily protein | chr5... 388 7e-107
> AT3G09770.1 | Symbols: | RING/U-box superfamily protein | chr3:2996269-2998190
REVERSE LENGTH=1655
Length=1655
Score = 2067 bits (1119), Expect = 0.0
Identities = 1482/1644 (90%), Gaps = 77/1644 (5%)
Strand=Plus/Plus
Query 2 TTTGGGAACATAAACACCATCGAA-AAGGGT----GGT-CTTTATGTTCATGAGTGGAGC 55
|||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||
Sbjct 23 TTTGGGAACATAAACACCATCGAAGGAGGGTGGGAGGTGTTTTATGTTCATGGGTGGAGC 82
Query 56 TTCTTGGCCAACC-GACCCCATCATCATCATCTCATTACCCACTTTCTTCCCCTAAATTA 114
||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 83 TTCTTGGCCAACCTGACCCCAT--TCATCATATCATTACCCACTTTCTTCTCCTAAATTA 140
Query 115 -T-tctc---tct-tatctctctc-tctt-tttt-ttt-ATTC----TT--TCT----T- 153
| |||| ||| | |||||||| | || |||| ||| ||| || ||| |
Sbjct 141 TTCTCTCTTATCTCTCTCTCTCTCTTTTTATTTTCTTTCTTTCTTAATTCATCTAAACTC 200
Query 154 TCT-T--AATT-C--ATCAAAAAT-C-T-C-TCT-GCTTTTTATTAATCCCC-GGATCTC 201
||| | || | || || | | | | | | || ||||||||||| | |||||
Sbjct 201 TCTCTGCTTTTGCTTTTCGTAATTCCTTACATTTCACTCAATATTAATCCCCAGAATCTC 260
Query 202 CGATCCACCCACAAACTTAGAAATTTTCTGAGATTTGATCATTTGGGTCACCAAAAGATC 261
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 261 CGATCCACCCACAAATTTAGCAATTTTCTGAGATTTGATCATTTGGGTCACCAAAAAATC 320
Query 262 TTGTC-TTTTGATTTGGGTTTAACGCCAATAATCATATGGGAAACATTAGCAGCAGCGGC 320
||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 321 TTGTCTTTTTGATCTGGGTTTAACGCCAATAA-CATATGGGAAACATTAGCAGCAGCGGT 379
Query 321 GGTGAAGGTAGACGCCGTCGACGGCGAAACCATACGGCGGct---ccaccacctcctcct 377
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 380 GGTGAAGGTAGACGCCGTCGACGGCGAAACCATACGGCGGCTCCACCACCACCTCCTCCT 439
Query 378 cctccttcttcttctcttcctccaccacctccaGCTACAGAAATCCAAGCTAATCCCATC 437
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 440 CCTCCTTCTTCTTCTCTTCCTCCACCACCTCTACCTACAGAAATCCAAGCTAATCCCATC 499
Query 438 GTTTTCGCCGCCGTTACTCCGTATCCAAATCCTAATCCTAATCCGGTTTACCAGTACCCT 497
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 500 GTTTTCGCTGCCGTTACTCCCTATCCTAATCCTAATCCTAATCCGGTTTACCAGTACCCT 559
Query 498 GCTTCTTACAT-CCACCATCCTCCGCCGGGAACCATGTCGGGTCCGCCTCTTCCGGCGTA 556
||||||||| | |||||||||||| |||||| ||||| | |||| | | | || | |
Sbjct 560 GCTTCTTAC-TACCACCATCCTCCCCCGGGAGCCATGCCTCTTCCG-C-CGTACGAC-CA 615
Query 557 CGACCACC-AC--C-TCCA--TCATCCTTACCACAACCACTCTTGGGCCCCCGTGGCGAT 610
| ||| || || | |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 616 CCACCTCCAACATCATCCACCGCATCCTTACCACAACCACTCTTGGGCTCCCGTGGCGAT 675
Query 611 GGCCAGATACCCTTATGCTGGTCACTTGATGGCTCCCCCGACTCCTTACGTTGAACACCA 670
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 676 GGCCAGATACCCTTATGCTGGTCACATGATGGCTCAACCGACTCCTTACGTTGAACACCA 735
Query 671 GAAAGCCGTCACGATTCGTAACGACGTTAATCTTAAGAAAGAGACCCTCAGGCTTGAACC 730
||||||||||||||||||||||||||||||||| ||||| ||| | || |||||||||||
Sbjct 736 GAAAGCCGTCACGATTCGTAACGACGTTAATCTCAAGAAGGAGTCTCTTAGGCTTGAACC 795
Query 731 CGACCCGGATAATCCGGGTCGCTTTCTCGTCTCCTTCACGTTTGATGCAACCGTCTCCGG 790
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 796 CGACCCGGATAATCCGGGTCGCTTTCTCGTCTCCTTTACGTTTGATGCAACCGTCTCCGG 855
Query 791 AAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAATCTCACAGCGACAAA 850
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 856 AAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAAACTCACAGCGACAAA 915
Query 851 GGAAGATATTCTGCCACCAATCACCCTAGATTTCGAGAAAGGACTTGGTCAGAAGTTTAA 910
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 916 GGAAGATATACTGCCACCTATCACTCTAGATTTCGAGAAAGGACTTGGTCAGAAGTTTAA 975
Query 911 ACAATCATCTGGTTCTGGTATAGACTTTTCGGTCTTTGAGGAAGTTGAGCTGTTCGAGGC 970
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 976 ACAATCATCTGGTTCTGGTATAGACTTTTCGGTCTTTGAGGACGTTGAGCTGTTCAAAGC 1035
Query 971 GG-CG-A-ATACAGATATCTATCCATTGGCGGTTAAGGCAGAAGCAGCTCCCTCA---GG 1024
|| || | | ||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1036 GGCCGCAGACACAGAGATCTATCCATTAGCGGTTAAGGCAGAAGCAGCTCCCTCAGGTGG 1095
Query 1025 TGAGAAT---GAAGAAGAAAGGTTGGGATCGAAGAAAAAGAATGCGCAGATTACTCAAGC 1081
||||||| ||||||||||||| ||| || | |||||||||||||||||||||||
Sbjct 1096 TGAGAATGAAGAAGAAGAAAGGTCGGGGTC---G---AAGAATGCGCAGATTACTCAAGC 1149
Query 1082 GGTTTATGAGAAGGATAAAGGAGAGATTAAGATTAGAGTGGTGAAGCAGATACTATGGGT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GGTTTATGAGAAGGATAAAGGAGAGATTAAGATTAGAGTGGTGAAGCAGATACTATGGGT 1209
Query 1142 TAATGGAACAAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACCGTTGAGGGCGA 1201
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1210 TAATGGAACGAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACAGTTGAGGGGGA 1269
Query 1202 TGAGGATTCAGCTGATGATGCTAATGATCCGGGAAAAGAATGTGTGATATGCTTGTCTGA 1261
||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 1270 TGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGA 1329
Query 1262 ACCACGAGACACGACTGTTCTTCCATGCCGACATATGTGTATGTGCAGCGGATGCGCTAA 1321
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1330 ACCACGAGACACCACTGTTCTTCCATGTCGACATATGTGTATGTGTAGCGGATGTGCTAA 1389
Query 1322 GGTATTGAGGTTTCAGACAAATCGATGCCCGATTTGCAGGCAACCTGTCGAAAGGCTTTT 1381
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1390 GGTATTGAGGTTTCAGACAAATCGATGCCCCATTTGCAGGCAACCTGTTGAAAGGCTTTT 1449
Query 1382 GGAGATAAAAGTTCACGGTAATAGCGGAAGTGGGAATAACACCGGACAGGGTGAAACAGT 1441
||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct 1450 GGAGATAAAAGTTCACGGTAACAACGGAAGCGGGAATAACACCGGACAGGGAGAAACAGT 1509
Query 1442 TGAACAAGAGTAGCCAAACACGGCCGAGTATGGATTGAAATGCCATCTGATATATTAGTA 1501
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1510 TGAACAAGAGTAGCTAAACACGGCCGAGTATGGATTGAAATGCCATC-GAAATATTAGTA 1568
Query 1502 -TAT--GCATGTTTGATCCTTGTATGTTAACAACAAAATGTGTGATTGTCAATTCATAAT 1558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GTATATGCATGTTTGATCCTTGTATGTTAACAACAAAATGTGTGATTGTCAATTCATAAT 1628
Query 1559 ATAGAGATTACGAAATCATTTGGA 1582
||||||||||||||||||||||||
Sbjct 1629 ATAGAGATTACGAAATCATTTGGA 1652
> AT5G03200.1 | Symbols: | RING/U-box superfamily protein | chr5:760319-761803
REVERSE LENGTH=1281
Length=1281
Score = 388 bits (210), Expect = 7e-107
Identities = 575/739 (78%), Gaps = 73/739 (10%)
Strand=Plus/Plus
Query 666 CACCAGAAAGCCGTCACGATTCGTAACGACGTTAATCTTAAGAAAGA-GACCCTCAGGCT 724
||||||||||||||||||||||||||||| |||||||| ||||| || ||| | | |||
Sbjct 452 CACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAA-GAAGACTTTAACGCT 510
Query 725 TGA-ACCCGACCCGGATAATCCGGGTCG-CTTTCTCGTCTCCTTCACGTTTGATGCAACC 782
| |||||||||||| |||||| ||| ||| || ||||||||||| ||||||||| ||
Sbjct 511 C-ATACCCGACCCGGAGAATCCGAATCGACTT-CTTGTCTCCTTCACATTTGATGCATCC 568
Query 783 GT-CTCCGGAAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAATCTCAC 841
| | |||||||||| | || |||||||||||| |||| | ||| || ||||| |
Sbjct 569 ATGC-CCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAG 627
Query 842 AGCGACAAAGGAAGATA-TTCTGCCACCAATCACCCTAGATTTCG-AGAAAGGACTTGGT 899
||| ||||||||||||| || |||| |||||||| | ||||||| |||| |||||||||
Sbjct 628 AGCTACAAAGGAAGATACTT-TGCCTCCAATCACTTTTGATTTCGGAGAA-GGACTTGGT 685
Query 900 CAGAAGTTTAAACAATCATCTGGTTCTGGTATAGACTTTTCGGTC-TTTGAGGAAGTT-- 956
|||||||| | |||||||||||| | ||||||||||| ||| | ||| | || ||
Sbjct 686 CAGAAGTTCATACAATCATCTGGAACGGGTATAGACTTGACGG-CGTTTAAAGA--TTCC 742
Query 957 GAGCTGTTCGAGGCGGCGAATACAGATATCTATCCA-TTGGCGGTTAAGGCAGAAGCAGC 1015
||||| ||| ||| || | |||||||| ||| ||| |||||||||||||| || ||| |
Sbjct 743 GAGCTATTCAAGGAGGTGGATACAGATGTCT-TCCCGTTGGCGGTTAAGGCGGAGGCAAC 801
Query 1016 TCCCTCAGGTGAGAATGAAGAAGAAAGGT-TGGGATCGAAGAAAAAGAATGCGCAGATTA 1074
||| || | ||| |||| ||||| | ||| || | || | ||| ||||||
Sbjct 802 TCC---AGC-G-GAA-GAAG--GAAAG-TCTGGT-TCCACCAAT--G--TGC--AGATTA 845
Query 1075 CTCAAGCGGTTTATGAG-AAGGATAAAGGAGAGATTAAGATTAGA-GTGGTGAAGCAGAT 1132
|||||| ||| ||| | ||||| |||||||||||||| || ||| ||||||||||||||
Sbjct 846 CTCAAGTGGTGTAT-ACCAAGGAGAAAGGAGAGATTAAAAT-AGAAGTGGTGAAGCAGAT 903
Query 1133 ACTATGGGTTAATG-GAACAAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACCG 1191
||||||||| ||| || | | |||||| ||| |||||||||||||||| ||| || |
Sbjct 904 ACTATGGGTGAATAAGAGGAGG-TATGAGCTGCTTGAGATTTATGGGATTGAGAACACGG 962
Query 1192 TTGAGGGCGATGAGGATTCAGCTGATGATGCTAATGATCCGGGAAAAGAATGTGT-GATA 1250
|||| || | ||| | ||||| | | | ||| |||||||| | ||
Sbjct 963 TTGA------TG-G--TTC--C-GATGA-G-----G----G--AAAGGAATGTGTTG-TA 997
Query 1251 TGCTTGTCTGAACCACGAGACACGACTGTTCTTCCATGCCGACATATGTGTATGTGCAGC 1310
||||||||||||||||| || || ||||||||||| ||| |||| ||||||||||| |||
Sbjct 998 TGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTATGTGTAGC 1057
Query 1311 GGATGCGCTAAGGTATTGAGGTTTCAGACAAATC-GATGCCC-GATTTGCAGGCAACCTG 1368
|| ||||| |||| || |||||||||||||||| | ||||| | ||||||| |||||||
Sbjct 1058 GGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTG-TGCCCAG-TTTGCAGACAACCTG 1115
Query 1369 TCGAAAGGCTTTTGGAGAT 1387
| || | ||||||||||||
Sbjct 1116 TTGAGATGCTTTTGGAGAT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5