BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478301
Length=2414
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3... 3759 0.0
> AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000759-3003179
REVERSE LENGTH=2421
Length=2421
Score = 3759 bits (2035), Expect = 0.0
Identities = 2295/2420 (95%), Gaps = 19/2420 (1%)
Strand=Plus/Plus
Query 1 GAACTTCATCTCCAATGGAAGCCCATttctttctcctctttctctctctcattctcCTGT 60
|||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 1 GAACTTCACCTCCAATGGAAACCCGTTGCTCTCTCCTCTTTCTCTCTCTCATTCTCCTGT 60
Query 61 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 120
||||||||||||||||||||||||||||||||| || || || |||||| ||||||| |
Sbjct 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120
Query 121 GCTCTGCTTTCTTCTGCGCCATTGATGCTAGTGGTCGTCAAGATGTTATCTGCTGGGGTA 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 GCTCTGCTTTCTTCTGCGCCATTGACGCTAGTGGTCGTCAAGATGTTATCTGCTGGGG-A 179
Query 181 AA-AACTATTCAtctccatcttctccgtcttcttcttcttcttcctcgtctcttgcttct 239
|| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 180 AAGAACTATTCATCTCCTTCTTCTCCCTCTTCTTCTTCTTCTTCGTCGTCTATTGCTTCT 239
Query 240 tctacttctGCAAGCTACAACATTCCGTCCATGGCGGTTCTTTCAGGTGGAGACGGGTTT 299
|| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 240 TCCACTTCCGCAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTT 299
Query 300 CTCTGCGGCATTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCT 359
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 300 CTCTGCGGCATTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCT 359
Query 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACCGGACTACTGCTTACTCTCAGATTGCTGCT 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGATAGCTGCT 419
Query 420 GG-AACAAGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCGGATCACGATTCTGGGAC 478
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GGAAAC-AGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCCGATCACGATTCTGGGAC 478
Query 479 TGTTGATTGTTGGGAGATAGCAAGAGCTACGAATAACAACAGCTTAATCGCGAAAGAGAA 538
| | ||||||||||||||| | ||||||||||| ||||||||||||||||| || |||||
Sbjct 479 TATCGATTGTTGGGAGATAACTAGAGCTACGAACAACAACAGCTTAATCGCCAAGGAGAA 538
Query 539 TCCAAACTTCTATGATCAGATTGTTCGTAATCTCGTCTTCAACAATATCGTTTCTGGTGA 598
||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 539 TCCTAACTTCTATGATCAGATTGTTAGTAATCTCGTCTTCAACAATATTGTTTCTGGTGA 598
Query 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGT-GGATTGCTCTGTTTTGGCCCCAATTCTT 657
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGTGGGA-TGCTCTGTTTTGGTCCCAATTCTT 657
Query 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGAAAAAACT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGTAAAAACT 717
Query 718 CCGTTTGTGCGATTCTAAACTCATCCCGGGAGGTAAAATGTTGGGGAGAAGATGAATCTT 777
|||||||||| ||||| || | ||| || ||||| |||||||||||||||||||||||||
Sbjct 718 CCGTTTGTGCTATTCTTAATTTATCTCGAGAGGTTAAATGTTGGGGAGAAGATGAATCTT 777
Query 778 TTGTTGATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCTGGTCCTCGCCATT 837
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 TTGTCAATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCGGGTCCTCGCCATT 837
Query 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAATGTTGGGGAAACTCTAATTTCTCTT 897
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAGTGTTGGGGAAACTCTAATTTCTCTT 897
Query 898 TGATTCCAAAAGGTTCCGGATTTAAGGCAATTGCTTCATCTGATTTCATTGTTTGTGGTA 957
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 898 TGATTCCAAAAGGTTCTGGATTTAAAGCAATAGCTTCGTCTGATTTCATTGTTTGTGGTA 957
Query 958 TAAGAGAAGAGGATCTTGTTCTTGATTGCTGGATGGTTAACGGTTCGTCGACATTAGCTT 1017
| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 958 TTAGAGAAGAGGATCTTGTTCTTGATTGTTGGATGGTTAATGGTTCGTCCACATTAGCTT 1017
Query 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTTATGAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTAATGAAA 1077
Query 1078 AAGAGTTTGCTTTCAACGCAAGTATCCTAAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1078 AAGAGTTTGCTTTCAACGCAAGTATACTCAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137
Query 1138 GGAGAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGAAAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197
Query 1198 CAAGTTCGTGCACCGAGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAAGTTCGTGCACCGCGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257
Query 1258 GTTCTTGTTCAGACATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTTCTTGTTCGGATATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317
Query 1318 AACTACAGAGACTTGTCCTCATCATCGGATCTTGCGCATCCGCTCTATTGATCCTCATAA 1377
|||||||||||||||| || |||||||| |||||||||||||||||||||||| | ||||
Sbjct 1318 AACTACAGAGACTTGTTCTTATCATCGGGTCTTGCGCATCCGCTCTATTGATCATTATAA 1377
Query 1378 TTGGTTGCTGTATCGTTCCACGGGTTATCATCACTAGTCCTAATAAAGAAGACGGCGCAG 1437
||||||||||| | || |||| || || ||||||||||||||||||||||||| ||||
Sbjct 1378 TTGGTTGCTGTGTTGTGCCAC-GG--ATTGTCACTAGTCCTAATAAAGAAGACGGAGCAG 1434
Query 1438 CGAATCAATTCAAATCTTGTATAGGAAAGCCCGATTTAGACACTG---AGCCACTTGAAA 1494
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 CGAATCAATTCAAATCTTGCATAGGAAAGCCCGATTTAGACACTGATCAGCCACTTGAAA 1494
Query 1495 ATGTCTCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ATGTATCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554
Query 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614
Query 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGACAAGTAGCGGTGAAGAGAGCAAACGCAGCAA 1674
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGGCAAGTAGCGGTTAAGAGAGCAAACGCAGCAA 1674
Query 1675 CCATAATCCACACAAACACTAGAGAATTTGAGACAGAATTGGAGATTCTCTGCAACATTA 1734
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1675 CCATAATCCACACAAACACTAGAGAATTCGAGACAGAATTGGAGATTCTCTGCAACATTA 1734
Query 1735 GGCATTGCAACATTGTGAATCTCCTCGGTTACTCGACCGAAATGGGAGAGAGGCTTCTTG 1794
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1735 GGCATTGCAACATTGTGAATCTCCTTGGTTACTCTACCGAAATGGGAGAGAGGCTTCTTG 1794
Query 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTACACAGTGGGTTTTCGCCAT 1854
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTGCACAGTGGGTTTTCGCCAT 1854
Query 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAAGGTCTTGAGTATCTAC 1914
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAGGGTCTTGAGTATCTTC 1914
Query 1915 ACAATGAAGCTGAGCCTAGAATCGTTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1915 ACAATGAAGCTGAGCCGAGAATCATTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974
Query 1975 ACACGGAATGGGTGGCGAGGGTTGCGGATTTCGGGTTCGTGACATCGTCGAACGAGAAGA 2034
|| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1975 ACTCGGAATGGGTGGCGAGAGTTGCGGATTTCGGGCTCGTGACATCGTCGAACGAGAAGA 2034
Query 2035 AGTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGT-CTTGTTAGAGATTTTAACT 2093
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2035 ATTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGTGCT-GTTAGAGATTTTAACC 2093
Query 2094 GGAAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGCTGAATGGGCAGTTACG 2153
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||
Sbjct 2094 GGTAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGTTGAATGGACGGTTCCG 2153
Query 2154 GTGATCAGAGAAGGCAGAGCAGCGGCGATTGTGGATAAGTATATTGCGTTGCCGAGAAAC 2213
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2154 GTGATCAGAGAAGGCAAAGCGGCGGCGATTGTGGATACGTATATTGCGTTGCCGAGAAAC 2213
Query 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGCGAGGATCCGAAT 2273
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGGGAGGATCCGAAT 2273
Query 2274 CAACGACCAACGATGTCGGAACTTGCGAATTGGTTGGAACAGGTCGCAAGAGATGCATTG 2333
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2274 CAACAACCAACTATGTCGGAACTTGCGAATTGGTTGGAACATGTCGCAAGAGATGCATTG 2333
Query 2334 ATCTTCTAGCTTTTTCTAATTTTCTTAATGAGTGTTATTATTCTTTTATTTATGAATTCT 2393
|||||||||||| || | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 2334 ATCTTCTAGCTTCTT-T--TTTT-T-AATGAGTGTTATTATTCTTTTATTTATGAATTCT 2388
Query 2394 GGTGAAATTGTATAATCAAA 2413
||||||||||||||||||||
Sbjct 2389 GGTGAAATTGTATAATCAAA 2408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119878901460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5