BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478303
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09800.1 | Symbols: | SNARE-like superfamily protein | chr3... 1249 0.0
AT4G08520.1 | Symbols: | SNARE-like superfamily protein | chr4... 688 0.0
> AT3G09800.1 | Symbols: | SNARE-like superfamily protein | chr3:3006515-3008489
REVERSE LENGTH=920
Length=920
Score = 1249 bits (676), Expect = 0.0
Identities = 805/865 (93%), Gaps = 18/865 (2%)
Strand=Plus/Plus
Query 27 CGATTTCTTCTGTCT---CGATCCTGCGCTTTTCACATTTGAA---TCC--TCCATTACT 78
||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||
Sbjct 61 CGATTTCTTCTGTCTCGACGATCTTGCGCTTTTCACATTTGAATCCTCCAATCCATTACT 120
Query 79 TCTTCTCCGGTCCATTATTCCGGTCCATCTCATCTGTCTTACAACAATGTCTCATGATTC 138
||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 121 TCTTCTCCGATCTTTTATTCCGGTACATCTCA--AGTCTTACAACAATGTCTCCTGATTC 178
Query 139 TTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGCTGTCAA 198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGTCCTTTGGTAAAGAAGATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGGCTGTCAA 238
Query 199 GTATTACTCGGATGACTGGCAAACTAATGCCGTCAAGTTAAGTTTTGAGAAATATGTATT 258
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 239 GTATTACTCGGATGACTGGCCAACTAATGCCGCCAAGTTAAGTTTTGAGAAGTATGTATT 298
Query 259 CTCAAAGACCTCTAAGACCAATGCTCGCACAGAAGCTGAGATCACACTGTTGGACAACAA 318
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 299 CTCAAAGACCTCTAAGACCAATGCTCGTACAGAAGCTGAGATCACACTGTTGGACAGCAA 358
Query 319 TATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTGAAAATGA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGAGGTGAAAATGA 418
Query 379 GAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCACTTCT-CT 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 AAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTTGCACTTCTTCT 478
Query 438 TGAGGAACAATGTGGAAAAGATGGAAGCCCTCGAGAACTTGGATCTCATCTTTTTATGCC 497
||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 479 -GAGGAGCAATGTGGAAAAGATGGAAGCCCTTGAGAACTTGGATCTCATCTTTCTATGCC 537
Query 498 TTGATGAAATGGTCGATCAGGGGGTGGTTCTTGAAACGGACCCAAACGTCATTGCGGGTA 557
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 538 TTGATGAAATGGTCGATCAAGGGGTGGTTCTTGAAACGGATCCAAACGTCATTGCGGGGA 597
Query 558 AAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACATTAACTCAAG 617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 598 AAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGACACTAACACAAG 657
Query 618 CGCTAGCAACAGCTCGGGAGCATCTGGCGAGAAGTCTGCTTACATGAGTTTAATCATGGC 677
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 658 CGCTAGCAACAGCTCGGGAGCATCTGGCAAGAAGTCTGCTTACATGAGTTCCATCATGGC 717
Query 678 CACACA-TAATTGAAGAATGGACCTTCAATTTCTTTGATGAACAACTTTT-ATGAGTGAG 735
||||| |||| |||| |||||| |||||||||| || ||| |||||||| || ||||
Sbjct 718 GACACAATAATAGAAGCATGGAC-TTCAATTTCTATGTTGAGCAACTTTTTATTTTTGAG 776
Query 736 TCTTCCGGTTTGAAAGTCTCTAATAATTGAATTCTGCATGCATACTCTTAAAGTTTGGTA 795
|||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 777 TCTTTCGGTTTGAAAGTCTCTAATAATTGAATTCTGCAAACAAACTCTTAAAGTTTGGTA 836
Query 796 GTAGAGGTTTGATTTTATATATAGCTTTGTGCAATGC-TGGAATTGTTTTTGGAGAGTGG 854
||| |||||||||| |||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 837 GTAAAGGTTTGATTATATATATAGCTTTGTGCAATGCATG-AAT-GTTTTTGGAGAGTGG 894
Query 855 AATATTATTACTCTAATTAAAGTCT 879
||| |||||||||||||| ||||||
Sbjct 895 AATTTTATTACTCTAATTGAAGTCT 919
> AT4G08520.1 | Symbols: | SNARE-like superfamily protein | chr4:5417348-5420530
FORWARD LENGTH=843
Length=843
Score = 688 bits (372), Expect = 0.0
Identities = 484/537 (90%), Gaps = 12/537 (2%)
Strand=Plus/Plus
Query 132 ATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGG 135
Query 192 CTGTCAAGTATTACTCGGATGACTGG-CAAACTAATGCCGTC-AAGTTAAG-TTTTGAGA 248
|||||||||||||||| ||||| ||| ||| ||||||| || |||||| | |||||| |
Sbjct 136 CTGTCAAGTATTACTCCGATGATTGGGCAA-CTAATGCT-TCCAAGTTA-GCTTTTGAAA 192
Query 249 AATATGTATTCTC-AAAGACCTCTAAGACCAATGCTCGCACAGAAGCTGAGATCACACTG 307
||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 193 AATATGTCTTCTCGAAA-ACCTCCAAGACCAATGCTCGCACAGAAGCTGAGATCACACTG 251
Query 308 TTGGACAACAATATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGA 367
||||| | |||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 252 TTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGGACCTGCATTTCTTTGTTACTGGA 311
Query 368 GGTGAAAATGAGAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTT 427
||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 312 GGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAAGGCTTTTTTGATGCTGTT 371
Query 428 GCACTT-CT-CTTGAGGAACAATGTGGAAAAGATGGAAGCCCTCGAGAACTTGGATCTCA 485
|| || || || |||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 372 GCG-TTACTTCT-GAGGAACAATGTTGAAAAGATGGAAGCCCTTGAAAACTTGGATCTCA 429
Query 486 TCTTTTTATGCCTTGATGAAATGGTCGATCAGGGGGTGGTTCTTGAAACGGACCCAAACG 545
||||||| ||||||||||| ||||| ||||| ||| |||| |||||||| ||| | || |
Sbjct 430 TCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTACTTGAAACAGACGCGAATG 489
Query 546 TCATTGCGGGTAAAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGA 605
| |||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 490 TTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGA 549
Query 606 CATTAACTCAAGCGCTAGCAACAGCTCGGGAGCATCTGGCGAGAAGTCTGCTTACAT 662
||||||||||||| | ||||||||||||||||| || ||||||||||| |||||||
Sbjct 550 CATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTTCTTACAT 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5