BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478307
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09830.1 | Symbols: | Protein kinase superfamily protein | ... 2377 0.0
> AT3G09830.1 | Symbols: | Protein kinase superfamily protein
| chr3:3016494-3018983 FORWARD LENGTH=1911
Length=1911
Score = 2377 bits (1287), Expect = 0.0
Identities = 1604/1750 (92%), Gaps = 49/1750 (3%)
Strand=Plus/Plus
Query 128 AATCATCGATCTCTTTTGTATCGTAG-TTCATGAACCCCTTTGTAATATTTATAATCATC 186
|||| ||||||||||||||||||| | ||||| |||| ||| | ||| |||||||| ||
Sbjct 175 AATCCTCGATCTCTTTTGTATCGT-GATTCATTAACCACTTCATGATAATTATAATCTTC 233
Query 187 CTTCTCTTCTGGCGATTGGATTACATCTTCTTCTGATA-AAGTTTTGATTTTGTGTAC-G 244
||||||||||| |||||| ||||||||||||||||||| ||| ||||||| | | | |
Sbjct 234 CTTCTCTTCTGACGATTGAATTACATCTTCTTCTGATAGCTGTTCTGATTTT-T-TTCTG 291
Query 245 AATATAATGTTACA-TGATCAGTG-TTTATTTGTGTCCTGCAGTGGAGAAACCTCGGTGT 302
||| || | || | | | |||| |||||| ||||||||||||||| |||| ||||| |
Sbjct 292 TATACAAAG-TAAATTCA-AAGTGTTTTATTGGTGTCCTGCAGTGGACAAACATCGGTAT 349
Query 303 TTTAATCTCTTTTCGATAATGAAGTGTTTCTTGTTTTCTGGTGGGGACAAGAAAGGGGAA 362
||||||||| | ||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 350 TTTAATCTCCTCTCGATAATGAAGTGTTTCTTGTTCTCTGGTGGGGATAAGAGAGGGGAA 409
Query 363 CAGAAGACCCCTATCTCGGTCTCATTGACTTCTAACTTCTCTGACCGCGAAATGAACCGA 422
|||||||||||||| ||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct 410 CAGAAGACCCCTATTTCGGTTTCATTGACCTCTATCTTCTCTGACCGCGAAATAAACCGA 469
Query 423 AGCGGGTCAGAGTTCAACTCTCGGGATGTCTCTGGGACGAGCACAGAGTCATCCATGGGG 482
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 470 AGCGGGTCAGAGTTCAACTCTCGTGATGTCTCTGGGACGAGCACAGAATCATCCATGGGG 529
Query 483 AGGAAGAACTCGTACCCTACAATGTCTACTAGAGCAAGTAATCTCAGAGAGTTCAGCATT 542
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGGAAGAACTCGTACCCTCCGGTGTCTACTAGAGCAAGTAATCTCAGAGAGTTCAGCATT 589
Query 543 ACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGATCGGAGAAGGTGGT 602
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 590 ACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGATTGGAGAAGGCGGT 649
Query 603 TTCGGTTGTGTCTTCAGGGGGACAGTGAGGAACTTAGAGGACCCGTCAAATAAAATCGAA 662
|||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 650 TTCGGTTGTGTCTTCAGGGGCACAGTGAGGAACTTAGAGGACTCGTCAGTTAAAATCGAA 709
Query 663 GTCGCGGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAAGGAATGGGTTACGGAA 722
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GTCGCAGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAAGGAATGGGTTACGGAA 769
Query 723 GTGAACTTCCTCGGGATAGTTGAGCATACAAACTTGGTGAAATTGCTTGGCTACTGTGCC 782
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 770 GTGAACTTCCTCGGAATAGTTGAGCATACAAACTTGGTGAAATTGCTTGGCTATTGTGCA 829
Query 783 GAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAATACATGCCTAACCGAAGT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAATACATGCCTAACCGAAGT 889
Query 843 GTTGAATTCCACTTATCCCCTCGGTCACTCACAGTTCTTACTTGGGACCTTAGATTGAGA 902
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 890 GTTGAATTCCACTTATCCCCTCGGTCACTCACAGTTCTTACTTGGGACCTCAGACTGAGA 949
Query 903 ATCGCCCAAGATGCAGCTCGTGGCTTAACATACCTGCACGAAGAAATGGAGTTTCAGATA 962
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 950 ATCGCCCAAGATGCAGCTCGCGGATTAACATACCTGCATGAAGAAATGGAGTTTCAGATA 1009
Query 963 ATATTCCGGGATTTCAAGTCCTCGAACATTCTTTTGGATGAGGACTGGAAAGCAAAGCTC 1022
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATATTCCGCGATTTCAAGTCCTCGAACATTCTTTTGGATGAGGACTGGAAAGCAAAGCTC 1069
Query 1023 TCAGATTTCGGTTTGGCTCGTTTAGGTCCATCGGAAGGACTAACCCATGTTTCTACTGAT 1082
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1070 TCAGATTTCGGTTTGGCTCGTTTAGGTCCATCTGAAGGATTAACCCATGTTTCTACTGAT 1129
Query 1083 GTCGTTGGTACAATGGGTTATGCAGCACCTGAATACATTCAAACCGGTCGTCTCACATCG 1142
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1130 GTTGTAGGTACAATGGGTTATGCAGCACCTGAATACATTCAAACCGGCCGTCTCACATCG 1189
Query 1143 AAAAGCGATGTGTGGGGATATGGAGTCTTCCTCTATGAGCTTATCACAGGGAGACGACCG 1202
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1190 AAAAGCGATGTGTGGGGTTATGGAGTCTTCCTCTATGAGCTTATCACTGGGAGGCGACCG 1249
Query 1203 GTGGACAGAAACAGACCCAAGGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTATTTA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GTGGACAGAAACAGACCCAAGGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTATTTA 1309
Query 1263 TCTGACACAAGGAAGTTCAAGCTCATATTAGACCCGAGGCTCGAAGGAAAGTACCCAATC 1322
|||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||
Sbjct 1310 TCTGACACAAGGAAGTTCAAGCTCATATTAGATCCAAGGCTGGAAGGGAAGTACCCGATC 1369
Query 1323 AAATCGGTTCAAAAGCTAGCAGTTGTGGCCAACAGATGTTTGGTTAGGAACTCAAAGGCA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAATCGGTTCAAAAGCTAGCAGTTGTGGCCAACAGATGTTTGGTTAGGAACTCAAAGGCA 1429
Query 1383 CGTCCCAAGATGAGTGAGGTGTTAGAGATGGTGACCAAGATTGTGGAAGCTTCTTCAGGG 1442
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1430 CGTCCCAAGATGAGTGAGGTTTTAGAGATGGTGAACAAAATTGTGGAAGCTTCTTCAGGA 1489
Query 1443 AACGGCAGCCCGCAGCTAGTTCCGCTGAACAGTCTAAAAGCTTCGAGAGGCGCGGGAGGA 1502
|| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 1490 AATGGCAGCCCACAGCTAGTTCCGCTGAACAGTGTAAAAGCTTCGAGAGACGCGAGAGGA 1549
Query 1503 AAGAACAATGGTGGTAGCGGTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCGAAGACA 1562
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1550 AAGAACAATGGTGGTGGCGGTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCAAAGACA 1609
Query 1563 ATAAGAGCTTGTTGACTTCTT-TAGAATTCAACCTCTTCTTACA--AAAGAAAAGGACTC 1619
||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||| | ||
Sbjct 1610 ATAAGAGCTTGTTGACTGCTTATAGAATTCAACCTCTTCTTACAGCAAAAAAAAG-AGTC 1668
Query 1620 AAGAAAGGTTTTATGGAGATTGCAAAGCTTGAAGATTGTGGCGAGATCAAGATCAAGCTC 1679
||||||||||| ||||||||| | ||| ||||||||| | ||||||||||||| ||||||
Sbjct 1669 AAGAAAGGTTTCATGGAGATTCCGAAGGTTGAAGATTCTAGCGAGATCAAGATGAAGCTC 1728
Query 1680 AAGCTCGTATACATACATAAAGATAATTATATATGAAGATTTGTGAAAGATTCTAAAATG 1739
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 A---T---ATACATACATAAAGATAATTATATATGAAGATTTGTGAAAGATTCTAAAATG 1782
Query 1740 AT-ACAGCTTAATTA-GTAAGA--T-ATG--TA-TA--------T---TT--TA-G-TAT 1776
|| | | | | || ||| || | ||| || || | || || | |||
Sbjct 1783 ATGAAATATGATTTTTGTATGAACTTATGAATAGTAACCACAGCTAAATTAGTAAGATAT 1842
Query 1777 --ATA--A-GCAAGAATGGCTTATCAGAGTTTTTGTTCCAAAGCTGATCAATCTACTCGT 1831
||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1843 GTATATTAAGCAAGAACGGCTTATCAGAGTTTT-GTTCCAAAGCTGATCAATCTACTCGT 1901
Query 1832 GCTTAAGTGT 1841
||||||||||
Sbjct 1902 GCTTAAGTGT 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91113989175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5