BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478309
Length=2732
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division c... 4421 0.0
AT5G03340.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr... 2684 0.0
> AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division
cycle 48 | chr3:3019340-3023052 FORWARD LENGTH=2804
Length=2804
Score = 4421 bits (2394), Expect = 0.0
Identities = 2567/2652 (97%), Gaps = 6/2652 (0%)
Strand=Plus/Plus
Query 65 AAAAAGCTCTCAACTTTCTTCGATTTCTGC-GGGAACTCGTTCGTTATTCTCAAACTCAA 123
|||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||
Sbjct 94 AAAAAGCTCTCAACTTTCTTCGATTTCT-CAGGGAACTCTTTCGTTAATCTCAAACTCAA 152
Query 124 TCATGTCTACCCCAGCTGAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TCATGTCTACCCCAGCTGAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTA 212
Query 184 TTCTCGAGAGGAAGAAGTCTCCGAACCGTCTTGTCGTCGATGAGGCAATCAACGATGATA 243
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 213 TTCTCGAGAGGAAGAAGTCTCCGAACCGTCTCGTCGTCGATGAGGCTATCAACGATGATA 272
Query 244 ACTCCGTCGTCTCTCTTCACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACTCCGTCGTCTCTCTTCACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATA 332
Query 304 CCATTCTCATCAAGGGTAAGAAAAGGAAGGACACTGTCTGCATTGCTCTCGCCGATGAGT 363
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 333 CCATTCTCATCAAGGGTAAGAAGAGGAAGGACACTGTCTGCATTGCTCTTGCTGATGAGA 392
Query 364 CATGTGAGGAGCCAAAGATCAGAATGAACAAAGTAGTCAGATCTAACTTGAGGGTTAGAC 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 393 CATGTGAGGAGCCAAAGATCAGAATGAATAAAGTAGTCAGATCTAACTTGAGGGTTAGAC 452
Query 424 TGGGAGATGTTATTTCTGTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTGCACA 483
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 453 TGGGAGATGTTATATCTGTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTTCACA 512
Query 484 TCTTGCCTGTTGATGATACTGTTGAAGGAGTGACTGGAAACCTCTTTGATGCTTACCTGA 543
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 513 TCCTGCCTGTTGATGATACTGTTGAAGGAGTGACTGGAAACCTATTTGATGCTTACCTGA 572
Query 544 AACCTTATTTCCTGGAGGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAG 603
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AACCTTATTTCCTTGAGGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAG 632
Query 604 GAGGCATGAGGAGTGTGGAGTTCAAAGTCATAGAGACAGATCCTGCTGAGTACTGCGTGG 663
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 633 GAGGAATGAGGAGTGTGGAGTTCAAAGTTATAGAGACAGATCCTGCTGAGTACTGCGTGG 692
Query 664 TTGCTCCAGACACAGAGATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTGCTCCAGACACAGAGATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAA 752
Query 724 GGCTAGATGATGTAGGTTATGATGATGTTGGCGGTGTCAGGAAACAGATGGCTCAGATCA 783
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 753 GGCTAGATGATGTAGGTTATGATGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTA 812
Query 784 GAGAACTTGTTGAACTTCCCTTGAGGCATCCACAGCTATTCAAGTCAATTGGTGTTAAGC 843
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 813 GGGAACTTGTTGAACTTCCCTTGAGGCATCCACAGCTATTCAAGTCGATTGGTGTTAAGC 872
Query 844 CACCAAAGGGAATTCTTCTTTATGGACCACCTGGGTCCGGAAAGACTTTGATTGCTCGTG 903
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 873 CACCGAAGGGAATTCTTCTTTATGGACCACCTGGGTCTGGAAAGACTTTGATCGCTCGTG 932
Query 904 CTGTGGCTAATGAAACTGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCA 963
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CTGTGGCTAATGAAACGGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCA 992
Query 964 AACTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAAAATG 1023
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 993 AATTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTCGAGGAGGCTGAGAAAAATG 1052
Query 1024 CCCCTTCAATCATATTCATTGATGAGATTGACTCTATTGCACCCAAAAGAGAGAAGACGA 1083
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1053 CGCCTTCAATCATATTCATTGATGAGATCGACTCTATTGCACCGAAAAGAGAGAAGACTA 1112
Query 1084 ATGGCGAGGTTGAGAGGAGGATTGTGTCTCAGCTGCTTACGCTTATGGATGGACTGAAAT 1143
|||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1113 ATGGAGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTAATGGATGGACTGAAAT 1172
Query 1144 CGCGTGCTCATGTTATTGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTT 1203
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CTCGTGCTCATGTTATCGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTT 1232
Query 1204 TGAGAAGGTTTGGAAGATTTGACAGGGAGATCGATATTGGGGTTCCTGACGAAATTGGAC 1263
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1233 TGAGAAGGTTTGGAAGATTTGACAGGGAGATCGATATTGGAGTTCCTGACGAAATTGGAC 1292
Query 1264 GTCTTGAAGTTCTGAGGATCCATACAAAGAACATGAAGCTTGCTGAAGATGTGGATCTCG 1323
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1293 GTCTTGAAGTTCTGAGGATCCATACAAAGAACATGAAGCTGGCTGAAGATGTGGATCTCG 1352
Query 1324 AAAGGATCTCAAAGGATACACACGGTTACGTCGGCGCTGATCTTGCAGCTTTGTGCACAG 1383
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1353 AAAGGATCTCAAAGGACACACACGGTTACGTCGGTGCTGATCTTGCAGCTTTGTGCACAG 1412
Query 1384 AGGCCGCCCTGCAATGCATCAGGGAGAAGATGGATGTGATTGATTTGGAAGATGACTCCA 1443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1413 AGGCCGCCCTGCAATGCATCAGGGAGAAGATGGATGTGATTGATCTGGAAGATGACTCCA 1472
Query 1444 TAGATGCTGAAATCCTCAATTCCATGGCAGTGACTAATGAACATTTCCACACTGCTCTCG 1503
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1473 TAGACGCTGAAATCCTCAATTCCATGGCAGTCACTAATGAACATTTCCACACTGCTCTCG 1532
Query 1504 GGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTGGAAGTTCCCAACGTCTCTTGGA 1563
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1533 GGAACAGCAACCCATCTGCACTTCGTGAAACTGTTGTGGAGGTTCCCAACGTCTCTTGGA 1592
Query 1564 ATGATATTGGAGGTCTTGAGAATGTCAAGAGAGAGCTTCAGGAGACTGTTCAATACCCAG 1623
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1593 ATGATATTGGAGGTCTTGAGAATGTCAAGAGAGAGCTCCAGGAGACTGTTCAATACCCAG 1652
Query 1624 TCGAACACCCAGAGAAGTTTGAGAAATTCGGGATGTCTCCATCAAAGGGAGTACTTTTCT 1683
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1653 TCGAGCACCCAGAGAAGTTTGAGAAATTCGGGATGTCTCCATCAAAGGGAGTCCTTTTCT 1712
Query 1684 ACGGTCCTCCTGGATGTGGGAAAACTCTTTTGGCCAAAGCTATTGCCAACGAGTGCCAAG 1743
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1713 ACGGTCCTCCTGGATGTGGGAAAACCCTTTTGGCCAAAGCTATTGCCAACGAGTGCCAAG 1772
Query 1744 CTAATTTCATCAGTGTCAAGGGTCCCGAGCTTCTGACGATGTGGTTTGGAGAGAGTGAAG 1803
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1773 CTAATTTCATCAGTGTCAAGGGTCCCGAGCTTCTGACAATGTGGTTTGGAGAGAGTGAAG 1832
Query 1804 CGAATGTCCGTGAAATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCTTTTCTTCG 1863
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1833 CAAATGTTCGTGAAATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCTTTTCTTTG 1892
Query 1864 ATGAGCTTGACTCCATTGCGACTCAGAGAGGAGGCGGAAGTGGAGGCGATGGAGGCGGCG 1923
||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| || |
Sbjct 1893 ATGAGCTCGACTCCATTGCAACTCAGAGAGGAGGTGGAAGTGGTGGCGATGGAGGTGGTG 1952
Query 1924 CTGCGGATAGAGTGTTGAACCAGCTTTTGACTGAGATGGATGGAATGAACGCCAAGAAAA 1983
||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1953 CTGCGGACAGAGTCTTGAACCAGCTTTTGACTGAGATGGACGGAATGAATGCCAAGAAAA 2012
Query 1984 CTGTCTTCATCATTGGAGCAACCAACAGACCTGACATTATCGATTCGGCTCTTCTCCGTC 2043
| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2013 CCGTCTTCATCATCGGAGCTACCAACAGACCTGACATTATCGATTCAGCTCTTCTCCGTC 2072
Query 2044 CTGGAAGGCTTGACCAGCTCATTTACATTCCACTACCAGACGAGGATTCCCGTCTCAATA 2103
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2073 CTGGAAGGCTTGACCAGCTCATTTACATTCCACTACCAGATGAGGATTCCCGTCTCAATA 2132
Query 2104 TCTTCAAGGCCGCCTTGAGGAAATCTCCTATTGCTAAAGATGTTGACATCGCTGCACTCG 2163
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 2133 TCTTCAAGGCCGCCTTGAGGAAATCTCCTATTGCTAAAGATGTAGACATCGGTGCACTTG 2192
Query 2164 CTAAATACACTCAGGGATTCAGTGGTGCTGATATCACTGAGATTTGTCAGAGAGCTTGCA 2223
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2193 CTAAATACACTCAGGGTTTCAGTGGTGCTGATATCACTGAGATTTGCCAGAGAGCTTGCA 2252
Query 2224 AGTACGCCATCAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAGAGGAGGAGCGAGA 2283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 AGTACGCCATCAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAGAGGAGGAGCGAGA 2312
Query 2284 ACCCAGAGGCAATGGAGGAAGATGGAGTGGATGAAGTATCAGAGATCAAAGCTGCACACT 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2313 ACCCAGAGGCAATGGAGGAAGATGGAGTGGATGAAGTATCAGAGATCAAAGCTGCACACT 2372
Query 2344 TTGAGGAGTCGATGAAGTATGCACGTAGGAGTGTGAGTGATGCAGACATCAGGAAGTACC 2403
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2373 TTGAGGAGTCGATGAAGTATGCGCGTAGGAGTGTGAGTGATGCAGACATCAGGAAGTACC 2432
Query 2404 AAGCTTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTGAATTCAGGTTCGAGA 2463
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2433 AAGCCTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTGAGTTCAGGTTCGAGA 2492
Query 2464 ATTCTGCTGGTTCAGGTGCCACCACTGGAGTTGCAGATCCGTTTGCCACGTCTGCAGCCG 2523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2493 ATTCTGCTGGTTCAGGTGCCACCACTGGAGTCGCAGATCCGTTTGCCACGTCTGCAGCCG 2552
Query 2524 CTGCTGGGGACGATGATGATCTCTACAATTAGTGATAACTTCATTATCCtttttttttAT 2583
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2553 CTGCTGGGGACGATGATGATCTCTACAATTAGTGATAACTTCTTTATCCTTTTTTTTT-T 2611
Query 2584 ATTAAGTTT-AAAACTCGAATTCTCTACTTTTGGATTACTGGGGAAAGTGATACTGATTC 2642
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2612 -T-AAGTTTTAAAACTCGAATTCTCTACTTTTGGATTACTGGGGAAAGTGATACTGATTC 2669
Query 2643 TTTCCTCGTGTTTTTAAGTTATCCGAATTTCTTGTGATTGGGTTTTAATCAATGTTCTTA 2702
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2670 TTTCCTCGTGTTTTTAAGTTATCCGAATCTCTTGTGTTTGGGTTTTAATCAATGTTCTTA 2729
Query 2703 ATTTTCGTTTCA 2714
||||||||||||
Sbjct 2730 ATTTTCGTTTCA 2741
> AT5G03340.1 | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:809948-813228
REVERSE LENGTH=2671
Length=2671
Score = 2684 bits (1453), Expect = 0.0
Identities = 2118/2439 (87%), Gaps = 45/2439 (2%)
Strand=Plus/Plus
Query 141 GAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTATTCTCGAGAGGAAGAAG 200
||||| || ||||||||| | ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 111 GAATCCTCCGACTCGAAAACTAAGAAGGATTTCAGTACTGCGATTCTAGAGAGGAAGAAG 170
Query 201 TCTCCGAACCGTCTTGTCGTCGATGAGGCAATCAACGATGATAACTCCGTCGTCTCTCTT 260
||||| ||||| ||||| |||||||| || || |||||||| ||||| || ||||||||
Sbjct 171 TCTCCAAACCGACTTGTTGTCGATGAAGCTATTAACGATGACAACTCTGTTGTCTCTCTC 230
Query 261 CACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATACCATTCTCATCAAGGGT 320
|| ||| | |||||||| || || ||||| ||||| || ||||| |||||||||||||||
Sbjct 231 CATCCTACTACCATGGAAAAACTCCAGCTTTTCCGAGGCGATACAATTCTCATCAAGGGT 290
Query 321 AAGAAAAGGAAGGACACTGTCTGCATTGCTCTCGCCGATGAGTCATGTGAGGAGCCAAAG 380
||||| |||||||||||||| |||||||| ||||| ||||| |||||||||| || |||
Sbjct 291 AAGAAGAGGAAGGACACTGTATGCATTGCCCTCGCTGATGAAACATGTGAGGAACCCAAG 350
Query 381 ATCAGAATGAACAAAGTAGTCAGATCTAACTTGAGGGTTAGACTGGGAGATGTTATTTCT 440
||||||||||| || || || || ||||||||||||||||| ||||||||||||||||||
Sbjct 351 ATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAGGGTTAGGCTGGGAGATGTTATTTCT 410
Query 441 GTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTGCACATCTTGCCTGTTGATGAT 500
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 411 GTTCACCAATGCCCAGATGTCAAGTATGGAAAGCGTGTTCACATCTTGCCTGTTGATGAT 470
Query 501 ACTGTTGAAGGAGTGACTGGAAACCTCTTTGATGCTTACCTGAAACCTTA-TTTCCTGGA 559
|| |||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 471 ACAGTTGAAGGCGTTACTGGAAACCTCTTTGATGCTTACCTGAAACCTTACTTT-CTGGA 529
Query 560 GGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAGGAGGCATGAGGAGTGT 619
||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 530 GGCGTACCGTCCAGTGAGGAAGGGAGATCTTTTCCTAGTGAGAGGAGGAATGAGGAGTGT 589
Query 620 GGAGTTCAAAGTCATAGAGACAGATCCTGCTGAGTACTGCGTGGTTGCTCCAGACACAGA 679
|||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 590 GGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTACTGTGTGGTGGCTCCAGATACAGA 649
Query 680 GATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAAGGCTAGATGATGTAGG 739
|||||||||||||||||| || || ||||| ||||| ||||||||||| ||||| || ||
Sbjct 650 GATTTTCTGTGAGGGTGAACCAGTTAAGAGGGAGGACGAAGAAAGGCTTGATGAGGTTGG 709
Query 740 TTATGATGATGTTGGCGGTGTCAGGAAACAGATGGCTCAGATCAGAGAACTT-GTTGAAC 798
|||||| |||||||| |||||||||||||||||||||||||| || ||| || |||||||
Sbjct 710 TTATGACGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGGGAA-TTGGTTGAAC 768
Query 799 TTCCCTTGAGGCATCCACAGCTATTCAAGTCAATTGGTGTTAAGCCACCAAAGGGAATTC 858
||||||||||||||||||| || || || ||||||||||| |||||||||||||||||||
Sbjct 769 TTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGGTGTGAAGCCACCAAAGGGAATTC 828
Query 859 TTCTTTATGGACCACCTGGGTCCGGAAAGACT-TTGATTGCTCGTGCTGTGGCTAATGAA 917
| ||||| ||||| ||||| ||||| |||||| || ||||||||||||||||||||||||
Sbjct 829 TGCTTTACGGACCTCCTGGATCCGGGAAGACTCTT-ATTGCTCGTGCTGTGGCTAATGAA 887
Query 918 ACTGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCAAACTGGCTGGTGAG 977
|| || || || |||||||||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 888 ACCGGAGCATTCTTCTTCTGTATCAATGGACCGGAAATCATGTCGAAACTAGCTGGTGAG 947
Query 978 AGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAAAATGCCCCTTCAATCATA 1037
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 948 AGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAGAATGCCCCGTCTATCATA 1007
Query 1038 TTCATTGATGAGATTGACTCTATTGCACCCAAAAGAGAGAAGACGAATGGCGAGGTTGAG 1097
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1008 TTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGAGAAGACGAATGGTGAGGTTGAG 1067
Query 1098 AGGAGGATTGTGTCTCAGCTGCTTACGCTTATGGATGGACTGAAATCGCGTGCTCATGTT 1157
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1068 AGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGGACTAAAATCACGTGCCCATGTT 1127
Query 1158 ATTGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTTTGAGAAGGTTTGGA 1217
||||| ||||||||||| ||||| ||||||||||| || || ||||||||||||||||||
Sbjct 1128 ATTGTTATGGGAGCAACAAATCGTCCCAACAGTATTGATCCGGCTTTGAGAAGGTTTGGA 1187
Query 1218 AGATTTGACAGGGAGATCGATATTGGGGTTCCTGACGAAATTGGACGTCTTGAAGTTCTG 1277
||||| |||||||| || ||||| || |||||||| |||||||||||||||||||||||
Sbjct 1188 AGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGAAATTGGACGTCTTGAAGTTCTT 1247
Query 1278 AGGATCCATACAAAGAACATGAAGCTTGCTGAAGATGTGGATCTCGAAAGGATCTCAAAG 1337
|||||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||| |||
Sbjct 1248 AGGATCCACACGAAGAACATGAAGCTAGCTGAAGATGTTGATCTAGAAAGAATCTCCAAG 1307
Query 1338 GATACACACGGTTACGTCGGCGCTGATCTTGCAGCTTTGTGCACAGAGGCCGCCCTGCAA 1397
|| || || || || || || ||||||||||||||| | ||||| || || ||||| |||
Sbjct 1308 GACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCTATGCACTGAAGCTGCCCTTCAA 1367
Query 1398 TGCATCAGGGAGAAGATGGATGTGATTGATTTGGAAGATGACTCCATAGATGCTGAAATC 1457
|| ||||| |||||||||||||||||||| |||||||||||||| || || || ||||||
Sbjct 1368 TGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGATGACTCAATTGACGCCGAAATC 1427
Query 1458 CTCAATTCCATGGCAGTGACTAATGAACATTTCCACACTGCTCTCGGGAACAGCAACCCA 1517
|||||||||||||| ||| |||||||||| |||||||||||||| || ||||||||||||
Sbjct 1428 CTCAATTCCATGGCTGTGTCTAATGAACACTTCCACACTGCTCTTGGAAACAGCAACCCA 1487
Query 1518 TCTGCACTTCGTGAAACTGTTGTGGAAGTTCCCAACGTCTCTTGGAATGATATTGGAGGT 1577
|| || |||||||||||||||||||| ||||| || ||||| ||| | ||||||||||||
Sbjct 1488 TCCGCCCTTCGTGAAACTGTTGTGGAGGTTCCAAATGTCTCCTGGGAGGATATTGGAGGT 1547
Query 1578 CTTGAGAATGTCAAGAGAGAGCTTCAGGAGACTGTTCAATACCCAGTCGAACACCCAGAG 1637
|| |||||||| |||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 1548 CTCGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCAATACCCTGTGGAGCATCCAGAG 1607
Query 1638 AAGTTTGAGAAATTCGGGATGTCTCCATCAAAGGGAGTACTTTTCTACGGTCCTCCTGGA 1697
|| || ||||| || || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1608 AAATTCGAGAAGTTTGGTATGTCTCCATCAAAGGGAGTTCTTTTCTACGGTCCTCCTGGA 1667
Query 1698 TGTGGGAAAACTCTTTTGGCCAAAGCTATTGCCAACGAGTGCCAAGCTAATTTCATCAGT 1757
||||| ||||| || || ||||||||||| || |||||||||||||| || |||||||||
Sbjct 1668 TGTGGTAAAACCCTGTTAGCCAAAGCTATAGCAAACGAGTGCCAAGCAAACTTCATCAGT 1727
Query 1758 GTCAAGGGTCCCGAGCTTCTGACGATGTGGTTTGGAGAGAGTGAAGCGAATGTCCGTGAA 1817
|||||||| ||||||||||| || |||||||||||||| |||||||| || ||||| |||
Sbjct 1728 GTCAAGGGACCCGAGCTTCTCACAATGTGGTTTGGAGAAAGTGAAGCCAACGTCCGAGAA 1787
Query 1818 ATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCT-TTTCTTCGATGAGCTTGACTC 1876
||||| |||||||| |||||||| ||||| |||||||| ||| ||||||||||| |||||
Sbjct 1788 ATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCTGTTT-TTCGATGAGCTAGACTC 1846
Query 1877 CATTGCGACTCAGAGAGG-AGGCGGAAGTGGAGGCGATGGAGGCGGCGCTGCGGATAGAG 1935
|||||| ||||||||||| | | | | || | |||| ||||| || || || ||||
Sbjct 1847 CATTGCTACTCAGAGAGGGAA-CAGC-GCGG-GT-GATGCCGGCGGTGCAGCTGACAGAG 1902
Query 1936 TGTTGAACCAGCTTTTGACTGAGATGGATGGAATGAACGCCAAGAAAACTGTCTTCATCA 1995
||||||| ||||||||||| || |||||||||||||| || ||||| || || ||||| |
Sbjct 1903 TGTTGAATCAGCTTTTGACAGAAATGGATGGAATGAATGCAAAGAAGACGGTATTCATTA 1962
Query 1996 TTGGAGCAACCAACAGACCTGACATTATCGATTCGGCTCTTCTCCGTCCTGGAAGGCTTG 2055
|||||||||| |||||||| || || || ||||| |||||||| || |||||||| || |
Sbjct 1963 TTGGAGCAACTAACAGACCGGATATCATAGATTCAGCTCTTCTTCGACCTGGAAGACTCG 2022
Query 2056 ACCAGCTCATTTACATTCCACTACCAGACGAGGATTCCCGTCTCAATATCTTCAAGGCC- 2114
||||||| || |||||||| ||||| || || |||||||||||||||||||| ||||||
Sbjct 2023 ACCAGCTTATCTACATTCCTCTACCTGATGAAGATTCCCGTCTCAATATCTTTAAGGCCT 2082
Query 2115 GCCTTGAGGAAATCTCCTATTGCTAAAGATGTTGACATCGCTGCACTCGCTAAA-TACAC 2173
|| ||||| |||||||| | ||||||||||| || | |||||||||| ||| |||||
Sbjct 2083 GC-TTGAGAAAATCTCCCGTCGCTAAAGATGTAGATGTTACTGCACTCGC-AAAGTACAC 2140
Query 2174 TCAGGGATTCAGTGGTGCTGATATCACTGAGATTTGTCAGAGAGCTTGCAAGTACGCCAT 2233
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2141 TCAGGGATTCAGTGGTGCTGATATCACCGAGATCTGCCAGAGAGCTTGCAAGTACGCCAT 2200
Query 2234 CAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAG-AGGAGGAGCGAGAACCCAGAGG 2292
|||||||||||| || ||||| ||||| || ||| | || |||||| |||| |||||||
Sbjct 2201 CAGAGAAAACATCGAAAAGGATATTGAGAACGAGC-GTAGAAGGAGCCAGAATCCAGAGG 2259
Query 2293 CAATGGAGGAAGATG-GAGTGGATGA--A-GTATCAGAGATCAAAGCTGCACACTTT-GA 2347
| |||||||||||| | |||||||| | || |||||||| | |||||| || ||| ||
Sbjct 2260 CCATGGAGGAAGATATG-GTGGATGATGAAGTTTCAGAGATTAGAGCTGCTCA-TTTCGA 2317
Query 2348 GGAGTCGATGAAGTATGCACGTAGGAGTGTGAGTGATGCAGACAT-CAGGAAGTACCAAG 2406
||||||||||| |||||| | || |||||||||||||| || || | | ||||||||||
Sbjct 2318 AGAGTCGATGAAATATGCAAGGAGAAGTGTGAGTGATGCTGATATTC-GCAAGTACCAAG 2376
Query 2407 CTTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTGAATTCAGGTTCGAG--AA 2464
|||||||||||||| ||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 2377 CTTTTGCTCAGACGCTGCAGCAATCCAGAGGGTTTGGATCTGAGTTCAGGTTTGACTCAA 2436
Query 2465 TTCTGCTGGT-TCAGGT-GCCACCACTGGAGTTGCAG------ATCCGTTTGCCACGTCT 2516
| |||||| || || || |||||||| ||||||| |||| |||||||| |||
Sbjct 2437 C-C-GCTGGTGTC-GGACGC-ACCACTGGTGTTGCAGCCGCCGATCCCTTTGCCACTTCT 2492
Query 2517 GCAGCCGCTGCTGGGGACGATGATGATCTCTACAATTAG 2555
||||| || |||| ||||| ||| ||||||| ||||
Sbjct 2493 GCAGCTGCAGCTGATGACGACGAT---CTCTACAGTTAG 2528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135701580815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5