BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478314
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase h... 1327 0.0
AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, R... 808 0.0
> AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase
homolog E1E | chr3:3034557-3036593 FORWARD LENGTH=1001
Length=1001
Score = 1327 bits (718), Expect = 0.0
Identities = 819/866 (95%), Gaps = 14/866 (2%)
Strand=Plus/Plus
Query 1 TCTCCGGCGAGAAGAGATTTTCC-GGGGAAAATAGCATGAGCTCTCGGTTTTAGTTTGTG 59
||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||
Sbjct 29 TCTCCGGCGAGAAGAGATTTTCCGGGGGAAAATAGCAAAAG--CTCGGTTTTAGTTTCTG 86
Query 60 TTTAGAAAGAGG--AC-G--TA--G----CTATTATCTTCTGTGATGGCGGTTGCGCCGG 108
|||||||||||| || | || | ||| ||||||| |||||||||||||||||
Sbjct 87 TTTAGAAAGAGGATACAGAATAGTGATTACTAACATCTTCTCCGATGGCGGTTGCGCCGG 146
Query 109 CAAGAGCTCGTTCAGACTATGATTACCTCATCAAGCTCCTCCTCATCGGCGATAGCGGTG 168
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 147 CAAGAGCTCGTTCAGACTATGATTATCTCATCAAGCTTCTCCTCATCGGTGATAGCGGTG 206
Query 169 TGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATGATACTTTTACCACGAGTTTCATTA 228
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 207 TGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGGATGATACTTTCACCACGAGTTTCATTA 266
Query 229 CTACCATTGGAATCGATTTCAAGATAAGAACAGTCGAACTTGATGGCAAGCGTATCAAAT 288
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 267 CTACCATTGGAATCGACTTCAAGATAAGAACAGTCGAACTTGATGGGAAGCGTATCAAAT 326
Query 289 TGCAGATTTGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACTACAGCATATTACA 348
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 327 TGCAGATATGGGACACTGCTGGACAAGAACGTTTTAGAACTATAACCACAGCATATTACA 386
Query 349 GAGGAGCTATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCTTTCAACAACA 408
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 387 GAGGAGCGATGGGTATATTACTCGTCTATGATGTAACAGATGAGTCATCATTCAACAACA 446
Query 409 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAAATATTGG 468
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 447 TTAGGAACTGGATGAAAAACATTGAGCAGCATGCGTCCGATAGTGTCAACAAGATATTGG 506
Query 469 TTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAGGGACAAG 528
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 507 TCGGTAACAAAGCCGACATGGACGAAAGCAAAAGGGCTGTCCCAACATCAAAAGGACAAG 566
Query 529 CTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAACGAGTGCAAAAACAAACCAGAATG 588
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 567 CTCTTGCTGATGAGTATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCAGAATG 626
Query 589 TCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAAAACAAAGGCTCACAGAAAGCGATA 648
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 627 TCGAGCAGGTTTTCCTTTCTATCGCTAAAGACATAAAACAAAGACTCACAGAAAGCGATA 686
Query 649 CAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAACAAGATGCTAACAAAGCCTCATCGT 708
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 CAAAAGCCGAGCCCCAAGGGATCAAGATCACTAAACAAGATGCTAACAAAGCCTCATCGT 746
Query 709 CTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGGACCTGTTT 768
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 747 CTTCTACAAATGAGAAATCAGCTTGCTGCAGTTATGTTTAGAAGTTCTCTGAACCTGTTT 806
Query 769 CTAATCTTTTACCGTCGTTAATCTTATTCGCATCATTCAAGAGATCGTCCTATGTTCTTA 828
||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 807 CTAATCTCTTACCGTCTTTAATCTTCTTCGCATCATTCAAGGGATCGTCCTATGTTCTTA 866
Query 829 TTAGTAGGAGGATAGACTTAATTGAT 854
||||||||||||||||||||||||||
Sbjct 867 TTAGTAGGAGGATAGACTTAATTGAT 892
> AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D,
RAB8C | RAB GTPase homolog 8C | chr5:883447-885425 FORWARD
LENGTH=1150
Length=1150
Score = 808 bits (437), Expect = 0.0
Identities = 593/669 (89%), Gaps = 7/669 (1%)
Strand=Plus/Plus
Query 86 TTCTG-TGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 144
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTCTGACGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 284
Query 145 TCCTCCTCATCGGCGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATG 204
| || ||||||||||||||||||||||| || ||||| |||||||| || ||||||||||
Sbjct 285 TTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCAGATG 344
Query 205 ATACTTTTACCACGAGTTTCATTACTACCATTGGAATCGATTTCAAGATAAGAACAGTCG 264
||||||| || || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct 345 ATACTTTCACTACAAGTTTCATTACTACCATTGGTATTGACTTCAAGATAAGAACTGTTG 404
Query 265 AACTTGATGGCAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGACAAGAACGTTTTA 324
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 405 AACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGTCAAGAACGTTTCA 464
Query 325 GAACTATAACTACAGCATATTACAGAGGAGCTATGGGTATATTACTCGTCTATGATGTAA 384
||||||| |||||||| |||||||| ||||| ||||||||||| || ||||| |||||||
Sbjct 465 GAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTACGATGTAA 524
Query 385 CAGATGAGTCATCTTTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAGCATGCGT 444
| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 525 CGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGAAGAACATTGAGCAACATGCCT 584
Query 445 CCGATAGTGTCAACAAAATATTGGTTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGG 504
| |||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 585 CAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGCAAAAGGG 644
Query 505 CTGTCCCAACATCAAAGGGACAAGCTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAA 564
|||| |||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 645 CTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGTATGGAATCAAATTCTTTGAGA 704
Query 565 CGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAA 624
|||||||||||||||||| |||||||| | |||||| | || ||||||||||||||||
Sbjct 705 CGAGTGCAAAAACAAACCTCAATGTCGAAAATGTTTTCATGTCAATCGCAAAAGACATAA 764
Query 625 AACAAAGGCTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAAC 684
||||||| | ||||||| ||| || || || ||||||||||| ||||||||||| ||||
Sbjct 765 AACAAAGATTGACAGAAACCGACACGAAGGCAGAGCCCCAAGGCATCAAGATCACTAAAC 824
Query 685 AAGATGCTAACAAAGCCTCATCGTCTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATG 744
||||| || ||| |||||||||||||| | ||||| ||||||||||| ||||| |
Sbjct 825 AAGATACT------GCCGCATCGTCTTCTACAGCCGAGAAGTCAGCTTGCTGTAGTTACG 878
Query 745 TTTAGAAGT 753
||||| |||
Sbjct 879 TTTAGGAGT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5