BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478315
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase ... 1230 0.0
AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, ... 614 6e-175
> AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase
homolog C2B | chr3:3036714-3038429 REVERSE LENGTH=1076
Length=1076
Score = 1230 bits (666), Expect = 0.0
Identities = 742/778 (95%), Gaps = 8/778 (1%)
Strand=Plus/Plus
Query 225 TAGAGTGAGAGATTGT---AG-AAATGGGATCTTCTTCTGGGCAAAGTGGTTATGATCTA 280
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 285 TAGAGTGAGAGATTGTAGAAGAAAATGGGATCTTCTTCTGGGCAAAGTGGGTATGATCTA 344
Query 281 TCTTTTAAGATCTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGTAGCTTGCTTCTCAGC 340
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 345 TCTTTCAAGATCTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGC 404
Query 341 TTCATTTCTAGCTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGATTTTAAGATCAAA 400
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 405 TTCATTTCCAGCTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGACTTTAAGATCAAA 464
Query 401 CAGATGAAAGTGAGAGGGAAAAGACTAAAACTTACAATCTGGGACACAGCTGGACAAGAA 460
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 465 CAGATGAAAGTAAGAGGGAAAAGGCTGAAACTTACAATCTGGGACACAGCTGGACAAGAA 524
Query 461 AAGTTCAGAACATTGACAAGTTCTTATTTCAGGGGCTCCCAAGGAATCATTCTCGTTTAT 520
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 525 AAGTTCAGAACATTGACAAGTTCTTATTTCAGAGGCTCCCAAGGAATCATTCTCGTTTAT 584
Query 521 GATGTGACGAAAAGAGACACATTTATGAACTTGGCAGATGTTTGGGCTAAAGAGATTGAG 580
||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 585 GATGTCACGAAAAGAGAGACATTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAG 644
Query 581 CTATATTCGACTAACCATGACTGCATTAAGATGCTTGTTGGCAACAAAGTTGATAGAGAA 640
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 645 CTATATTCGACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTTGATAGAGAA 704
Query 641 TCTGAGAGGAAGGTTAGCCGGGAAGAAGGAATGACTCTAGCGAAAGAACTCAAGTGTTTG 700
|| || ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 705 TCAGAAAGGAAGGTTAGCCGGGAAGAAGGAATGGCTCTAGCGAAAGACCTCAATTGTTTG 764
Query 701 TTTCATGAATGTAGCGCAAGAACCAGAGAAAACGTGAACTGG-TGCTTCGAAGAGCTTGC 759
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 765 TTTCATGAATGTAGCGCAAGAACCCGAGAAAACGTGAAC-GGATGCTTCGAAGAGCTAGC 823
Query 760 TTTGAAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCTCTGTGAAGAGAAA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTTGAAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCTCTGTGAAGAGAAA 883
Query 820 ACCGGATTACCGATCTCATCAAGGCCGGTGTTGCAGCTCGTGAGTCACCTTGTTAAACCC 879
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 884 ACCGGATTACCGAGCTCATCAAGGCCGGTGTTGCAGCTCGTGAGTCACCTTGTTAAAATC 943
Query 880 GGGTCGGAAGTAGCCTCTTTTGTGTGTAAATTTCTCAAGCAGCTT-AGCTTCTCTGTAAA 938
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 944 GGGTCGGAAGTAGCCTCTTTTGTGTGTAAATTTCTCAAGAAGCTTGA-CTTCTCTGTAAA 1002
Query 939 TTTATCAATTCCTTGGATCTTTCTTCTTCTTGCCTCGGCTGAGATTGTGTAATAAGTT 996
|||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1003 TTTATCAATTCCTTCGATCTTTCTTCTTCTTGCCTCGGCGGAGATTTTGTAATAAGTT 1060
Score = 124 bits (67), Expect = 1e-27
Identities = 89/98 (91%), Gaps = 8/98 (8%)
Strand=Plus/Plus
Query 31 TATTTGTTC-A-AATTCT-AGTAAGCGTTTTTCATTA-TT-TTTTCTGCTCTGTAAAGAA 85
||||||||| | |||||| | ||| |||||||||||| || |||||||||||||||||||
Sbjct 59 TATTTGTTCAACAATTCTCATTAA-CGTTTTTCATTATTTGTTTTCTGCTCTGTAAAGAA 117
Query 86 TAAAGTTTCTTAATTTTGTTTGTATGAATCATAGATTT 123
|||||||||||||||| ||| |||||||||||||||||
Sbjct 118 TAAAGTTTCTTAATTT-GTT-GTATGAATCATAGATTT 153
> AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A,
RABC2A | RAB GTPase homolog C2A | chr5:885522-887390 REVERSE
LENGTH=1181
Length=1181
Score = 614 bits (332), Expect = 6e-175
Identities = 512/597 (86%), Gaps = 19/597 (3%)
Strand=Plus/Plus
Query 233 GAGATTGTAG-AAATGGGATCTTCTTCTGGGCAAAGTGGTTATGATCTATCTTTTAAGAT 291
||| || ||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 317 GAGGTTTTAGAAAATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGAT 376
Query 292 CTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGTAGCTTGCTTCTCAGCTTCATTTCTAG 351
|||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 377 CTTGTTGATTGGTGATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAG 436
Query 352 CTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGATTTTAAGATCAAACAGA-TGAAAG 410
||| || |||||||||||||| || |||||||||||||| ||||||||||| | ||| ||
Sbjct 437 CTCCGTTGAAGATCTTGCTCCTACTATTGGTGTTGATTTCAAGATCAAACA-ATTGACAG 495
Query 411 TGA-GAGGGAAAAGACTAAAACTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGA 469
| | |||| ||||| |||||||| ||||||||||||||||||||||| ||| ||| |||
Sbjct 496 T-AGGAGGCAAAAGGCTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGA 554
Query 470 ACATTGACAAGTTCTTATTTCAGGGGCTCCCAAGGAATCATTCTCGTTTATGATGTGACG 529
||| ||||||| ||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 555 ACACTGACAAGCTCTTACTACAGAGGCGCCCAAGGAATCATTCTCGTTTATGATGTGACG 614
Query 530 AAAAGAGACACATTTATGAACTTGGCAGATGTTTGGGCTAAAGAGATTGAGCTATATTCG 589
| ||| || ||||||| ||||| | |||||| |||| ||| ||||||||||| || ||
Sbjct 615 AGAAGGGAGACATTTACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTACTCC 674
Query 590 ACTAACCATGACTGCATTAAG-ATGCTTGTTGGCAACAAAGTTGATAGAGAATCTGAGAG 648
|| ||||| || || | ||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 675 ACAAACCAAGAATGTGT-AAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAG 733
Query 649 -GAAGGTTAGCCGGGAAGAAGGAAT-GACTCTAGCGAAAGAACTCAAGTGTTTGTTTCAT 706
| || | ||| | |||||||| || | ||||||| ||||||||||| || |||||| |
Sbjct 734 AGGAG-TAAGCAGAGAAGAAGGGATTG-CTCTAGCAAAAGAACTCAACTGCATGTTTCTT 791
Query 707 GAATGTAGCGCAAGAAC-CAGAGAAAACGTG-AACTGGTGCTTCGAAGAGCTTG-CTTTG 763
|| ||||| || ||||| | || |||||||| ||| | || ||||||||| ||| |||||
Sbjct 792 GAGTGTAGTGCTAGAACTC-GACAAAACGTGGAACAG-TGTTTCGAAGAG-TTGGCTTTG 848
Query 764 AAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCT-CTGTGAAGAGAAA 819
||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 849 AAGATAATGGAGGTACCTAGTCTCTTGGAAGAAGGATCAAG-TGCTGTGAAGAGAAA 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5