BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478316
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 619 1e-176
AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 163 2e-39
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 76.8 3e-13
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 619 bits (335), Expect = 1e-176
Identities = 548/643 (85%), Gaps = 45/643 (7%)
Strand=Plus/Plus
Query 278 GCGTCCTTGGTCAAAAGATATATGTAGCAGGATGTTACAACGATATACATTTAGATTCTT 337
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 573 GCGTCCTTGGTGAAAAGATATATGTAGCAGGATGTTACAGCGATATGCATTTAGGTTCTT 632
Query 338 CTTTCTTTGAGGTGTTCGACACAAAAACAAAAGTTTGGGTTAGTGAGCCCATCCCTTGCA 397
|||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 633 CTTTCTTTGAGGTGTTCGACACGAAAACGGAAGTTTGGGTTAGTGAG------CC---CA 683
Query 398 TCCCTTACAGCGAGAGAGAATTCAACTTTCTTCACTCCAAAAGCATTTGTATTGATAAAA 457
||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 684 TCCCTTACAGCGACAGAAAATACAACTTTCTTCACCCCAAAAGCATTTGTATTGATGGAA 743
Query 458 AGATCCATGTGGTGACTGACAGTGAGGGGGTGGTTGCTTACGATGCCAAGGAAGGTAGAT 517
|||||||||| |||||||||||||||||||| ||||||||| || |||||||| | | |
Sbjct 744 AGATCCATGTAGTGACTGACAGTGAGGGGGTTGTTGCTTACAATCCCAAGGAA-G--G-T 799
Query 518 GGGACCTGGTTGGACTACGGTTGGATTTGGATCAGCATATGCGTTCAGATTCTTATTGCG 577
| | | | ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 800 ---A------T--A-T--GGTTGGATTTGGATCAGTATATGCGTTCAGATTCTTATTGTG 845
Query 578 TGATGGA-GAATGTTTTGTACTCTGTTTATAACAGAATGGTCATATGGTATGACACTGAG 636
||| || | || |||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 846 AGATAGATG-ATATTTTGTACTCTGTTTATAGCAGAACGGTTATATGGTATGACACTGAG 904
Query 637 GCAAGCAGGTGGAGATATTTGGAGGGCTTGGCAGGACTACCTACGTTTCCTCTTGGTGGT 696
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 905 GCAAGCAGGTGGAGATATTTGGAGGGCTT---AGGACAACTTACGTTTCCTCTTGGTGCT 961
Query 697 TCTGTTAGATTGGGTGATTATGGTGGAAAGTTAGTGGTTTTGTGGGAAGAGGATTTGCTT 756
||| |||| || | | | || |||||||| |||||||||||| ||||||||||||
Sbjct 962 TCTATTAG---GGCT--T-A-GG---AAAGTTAGCGGTTTTGTGGGACGAGGATTTGCTT 1011
Query 757 TATTGTTTGTCTAGTTTCGTCCATAAGAATAAGATATGGTGTGCCGAGATTGCGCTTCAA 816
||| ||||| ||||||||||| ||||||| ||||| |||||||| |||||| ||||| ||
Sbjct 1012 TATGGTTTGACTAGTTTCGTCTATAAGAAGAAGATTTGGTGTGCGGAGATTTCGCTTGAA 1071
Query 817 AGACGCAAAAGTGGTGAAA-TTTATGGGAAAGTTGAGTGGTTAGATCATGTGCTTACAAT 875
||| |||||||| | |||| ||| |||||| ||||| ||||| ||||||||||||||| |
Sbjct 1072 AGAAGCAAAAGTTGCGAAAGTTT-TGGGAA-GTTGAATGGTTTGATCATGTGCTTACAGT 1129
Query 876 CCCTAAAGAATATGATTTGGTGAAGGTTCTTGCTGCTACTGTT 918
|||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 1130 GCCTAAAGAATGTGAATTGGTGAAAGTTCTTGCTGCTACTGTT 1172
Score = 433 bits (234), Expect = 2e-120
Identities = 261/274 (95%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 1 TGTCTCTATGTGTGCTTACGGTGCTTTCCTGGTTATCGCTGGTTCACCCTCTGTCGGAAG 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 236 TGTCTCTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAG 295
Query 61 CCTGATCAAACCCTAACCAATGACACCACT-AAGAAGAAGCCAAGTGGGTATGTTTTGGC 119
|| |||||||||||| |||||||||||||| || |||||| |||||||||||||||||||
Sbjct 296 CCAGATCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGC 354
Query 120 ACCAGTCCCGATTCCTAGTTTTCATAAACCGCACTTTTCGAGTCTCGTGGTGGTTGGTTC 179
| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 355 AACAGTCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTC 414
Query 180 TGATATCTACAACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGATATCTACTACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 474
Query 240 CACGTGGCGCAAGGTTCAAAGCTTGATTCTAGAT 273
|||||||||| |||||||||||| ||||||||||
Sbjct 475 CACGTGGCGCCAGGTTCAAAGCTCGATTCTAGAT 508
> AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2047305-2048553 REVERSE LENGTH=1249
Length=1249
Score = 163 bits (88), Expect = 2e-39
Identities = 216/273 (79%), Gaps = 28/273 (10%)
Strand=Plus/Plus
Query 1 TGTCTCTATGTGTGCTTACG-GTGCTT-TCCTGGTTATCGC-TGGTTCACCCTCTGTCGG 57
||||||||| ||| | || | ||| || ||||| ||||||| | |||||||||||| |||
Sbjct 244 TGTCTCTATCTGTCCATA-GCGTG-TTATCCTGATTATCGCAT-GTTCACCCTCTGCCGG 300
Query 58 AAGCCTGATCAAACCCTAACCA--A-TGA-CACCA--CTAAGAAGAAGCCAAGTGGGTAT 111
|| ||||||||||||||||||| | ||| | | |||||||| ||| ||| |||
Sbjct 301 AAACCTGATCAAACCCTAACCACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT 360
Query 112 GT-TTTGGCACCAGTCCC-GATTCCTAGTTTTCATAAACC-G-C-ACTTTTCGAGTCTCG 166
| |||||| |||||||| || ||| || ||| | | || | | |||| ||||||||||
Sbjct 361 -TATTTGGCTCCAGTCCCAGA-TCC-AG-ATTC-TCATCCTGTCTACTTCTCGAGTCTCG 415
Query 167 TGGTGGTTGGTTCTGATATCTACAACA-T-CC---ACGGGC-CCTCCTCTAACGTCTCGA 220
| ||||||||||||||||||||||| | || || | ||||||||||||||||||
Sbjct 416 TCACGGTTGGTTCTGATATCTACAACATTGCCGGTTCGCACGCCTCCTCTAACGTCTCGA 475
Query 221 TTCTGGATTGCCGGTCTCACACGTGGCGCAAGG 253
|||||||||||||||| ||||||||||| |||
Sbjct 476 TTCTGGATTGCCGGTCAAACACGTGGCGCGAGG 508
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 76.8 bits (41), Expect = 3e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 203 CCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCACACGTGGCGCAAGGTTCAAAGCT 262
||||||||| |||| | ||||||||||||||||||||||||||||| ||| || |||||
Sbjct 467 CCTCCTCTAGTGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCT 526
Query 263 TG 264
||
Sbjct 527 TG 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5