BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478316 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 619 1e-176 AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 163 2e-39 AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 76.8 3e-13 > AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | chr3:3039015-3040186 REVERSE LENGTH=1172 Length=1172 Score = 619 bits (335), Expect = 1e-176 Identities = 548/643 (85%), Gaps = 45/643 (7%) Strand=Plus/Plus Query 278 GCGTCCTTGGTCAAAAGATATATGTAGCAGGATGTTACAACGATATACATTTAGATTCTT 337 ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||| Sbjct 573 GCGTCCTTGGTGAAAAGATATATGTAGCAGGATGTTACAGCGATATGCATTTAGGTTCTT 632 Query 338 CTTTCTTTGAGGTGTTCGACACAAAAACAAAAGTTTGGGTTAGTGAGCCCATCCCTTGCA 397 |||||||||||||||||||||| ||||| ||||||||||||||||| || || Sbjct 633 CTTTCTTTGAGGTGTTCGACACGAAAACGGAAGTTTGGGTTAGTGAG------CC---CA 683 Query 398 TCCCTTACAGCGAGAGAGAATTCAACTTTCTTCACTCCAAAAGCATTTGTATTGATAAAA 457 ||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| || Sbjct 684 TCCCTTACAGCGACAGAAAATACAACTTTCTTCACCCCAAAAGCATTTGTATTGATGGAA 743 Query 458 AGATCCATGTGGTGACTGACAGTGAGGGGGTGGTTGCTTACGATGCCAAGGAAGGTAGAT 517 |||||||||| |||||||||||||||||||| ||||||||| || |||||||| | | | Sbjct 744 AGATCCATGTAGTGACTGACAGTGAGGGGGTTGTTGCTTACAATCCCAAGGAA-G--G-T 799 Query 518 GGGACCTGGTTGGACTACGGTTGGATTTGGATCAGCATATGCGTTCAGATTCTTATTGCG 577 | | | | ||||||||||||||||| |||||||||||||||||||||| | Sbjct 800 ---A------T--A-T--GGTTGGATTTGGATCAGTATATGCGTTCAGATTCTTATTGTG 845 Query 578 TGATGGA-GAATGTTTTGTACTCTGTTTATAACAGAATGGTCATATGGTATGACACTGAG 636 ||| || | || |||||||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 846 AGATAGATG-ATATTTTGTACTCTGTTTATAGCAGAACGGTTATATGGTATGACACTGAG 904 Query 637 GCAAGCAGGTGGAGATATTTGGAGGGCTTGGCAGGACTACCTACGTTTCCTCTTGGTGGT 696 ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct 905 GCAAGCAGGTGGAGATATTTGGAGGGCTT---AGGACAACTTACGTTTCCTCTTGGTGCT 961 Query 697 TCTGTTAGATTGGGTGATTATGGTGGAAAGTTAGTGGTTTTGTGGGAAGAGGATTTGCTT 756 ||| |||| || | | | || |||||||| |||||||||||| |||||||||||| Sbjct 962 TCTATTAG---GGCT--T-A-GG---AAAGTTAGCGGTTTTGTGGGACGAGGATTTGCTT 1011 Query 757 TATTGTTTGTCTAGTTTCGTCCATAAGAATAAGATATGGTGTGCCGAGATTGCGCTTCAA 816 ||| ||||| ||||||||||| ||||||| ||||| |||||||| |||||| ||||| || Sbjct 1012 TATGGTTTGACTAGTTTCGTCTATAAGAAGAAGATTTGGTGTGCGGAGATTTCGCTTGAA 1071 Query 817 AGACGCAAAAGTGGTGAAA-TTTATGGGAAAGTTGAGTGGTTAGATCATGTGCTTACAAT 875 ||| |||||||| | |||| ||| |||||| ||||| ||||| ||||||||||||||| | Sbjct 1072 AGAAGCAAAAGTTGCGAAAGTTT-TGGGAA-GTTGAATGGTTTGATCATGTGCTTACAGT 1129 Query 876 CCCTAAAGAATATGATTTGGTGAAGGTTCTTGCTGCTACTGTT 918 |||||||||| ||| |||||||| |||||||||||||||||| Sbjct 1130 GCCTAAAGAATGTGAATTGGTGAAAGTTCTTGCTGCTACTGTT 1172 Score = 433 bits (234), Expect = 2e-120 Identities = 261/274 (95%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 1 TGTCTCTATGTGTGCTTACGGTGCTTTCCTGGTTATCGCTGGTTCACCCTCTGTCGGAAG 60 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 236 TGTCTCTATGTGTGCTTACGGTGCTGTCCTGGTTATCGCTGGTTCACCCTGTGTCGGAAG 295 Query 61 CCTGATCAAACCCTAACCAATGACACCACT-AAGAAGAAGCCAAGTGGGTATGTTTTGGC 119 || |||||||||||| |||||||||||||| || |||||| ||||||||||||||||||| Sbjct 296 CCAGATCAAACCCTATCCAATGACACCACTGAA-AAGAAGTCAAGTGGGTATGTTTTGGC 354 Query 120 ACCAGTCCCGATTCCTAGTTTTCATAAACCGCACTTTTCGAGTCTCGTGGTGGTTGGTTC 179 | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 355 AACAGTCCCCATTCCTAGTTTTCATAAACCGCGCTTTTCGAGTCTCGTGGTGGTTGGTTC 414 Query 180 TGATATCTACAACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 239 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 TGATATCTACTACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCA 474 Query 240 CACGTGGCGCAAGGTTCAAAGCTTGATTCTAGAT 273 |||||||||| |||||||||||| |||||||||| Sbjct 475 CACGTGGCGCCAGGTTCAAAGCTCGATTCTAGAT 508 > AT3G06570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2047305-2048553 REVERSE LENGTH=1249 Length=1249 Score = 163 bits (88), Expect = 2e-39 Identities = 216/273 (79%), Gaps = 28/273 (10%) Strand=Plus/Plus Query 1 TGTCTCTATGTGTGCTTACG-GTGCTT-TCCTGGTTATCGC-TGGTTCACCCTCTGTCGG 57 ||||||||| ||| | || | ||| || ||||| ||||||| | |||||||||||| ||| Sbjct 244 TGTCTCTATCTGTCCATA-GCGTG-TTATCCTGATTATCGCAT-GTTCACCCTCTGCCGG 300 Query 58 AAGCCTGATCAAACCCTAACCA--A-TGA-CACCA--CTAAGAAGAAGCCAAGTGGGTAT 111 || ||||||||||||||||||| | ||| | | |||||||| ||| ||| ||| Sbjct 301 AAACCTGATCAAACCCTAACCACCAGTGAGGAGGAGGAGAAGAAGAAATCAAATGGTTAT 360 Query 112 GT-TTTGGCACCAGTCCC-GATTCCTAGTTTTCATAAACC-G-C-ACTTTTCGAGTCTCG 166 | |||||| |||||||| || ||| || ||| | | || | | |||| |||||||||| Sbjct 361 -TATTTGGCTCCAGTCCCAGA-TCC-AG-ATTC-TCATCCTGTCTACTTCTCGAGTCTCG 415 Query 167 TGGTGGTTGGTTCTGATATCTACAACA-T-CC---ACGGGC-CCTCCTCTAACGTCTCGA 220 | ||||||||||||||||||||||| | || || | |||||||||||||||||| Sbjct 416 TCACGGTTGGTTCTGATATCTACAACATTGCCGGTTCGCACGCCTCCTCTAACGTCTCGA 475 Query 221 TTCTGGATTGCCGGTCTCACACGTGGCGCAAGG 253 |||||||||||||||| ||||||||||| ||| Sbjct 476 TTCTGGATTGCCGGTCAAACACGTGGCGCGAGG 508 > AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:13098141-13099531 REVERSE LENGTH=1391 Length=1391 Score = 76.8 bits (41), Expect = 3e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 203 CCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCACACGTGGCGCAAGGTTCAAAGCT 262 ||||||||| |||| | ||||||||||||||||||||||||||||| ||| || ||||| Sbjct 467 CCTCCTCTAGTGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCT 526 Query 263 TG 264 || Sbjct 527 TG 528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5