BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478320
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09930.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1893 0.0
> AT3G09930.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:3053260-3055410 FORWARD LENGTH=1368
Length=1368
Score = 1893 bits (1025), Expect = 0.0
Identities = 1235/1334 (93%), Gaps = 23/1334 (2%)
Strand=Plus/Plus
Query 14 Aacacaaca-aaacac-acacacacacaAGTATTTTGGTCTGAATCTGATACCTCAATAC 71
||||| ||| | |||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 28 AACAC-ACACACACACAAAACACACACAAGCCTTTTGGTCTGAATCTGATACATCAATAC 86
Query 72 ACCAACAACAATGGAGTCACTAAAAATAttcatctctctttttctcttctcattctcatc 131
||||||||||||||||| || |||| |||| ||||| || ||||||||||||||||||||
Sbjct 87 ACCAACAACAATGGAGTTACCAAAACTATTAATCTCACTCTTTCTCTTCTCATTCTCATC 146
Query 132 tttcttcttAGGTGTTGAATCGGATCATCTTCAGCATAGTAACTTGAAGAGATTGAGACC 191
|||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 147 TTTCTTCTTAGGTGCTGAATCGGATTATCCTCAGCATAGTAACTTGAAGAGACTGAGACC 206
Query 192 GAATAGACTGTTCGTGTTTGGAGATTCCTATGCAGACACCGGAAACATAAGGAAGTCTCT 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 207 GAATAGACTGTTCGTGTTTGGAGATTCCTATGCAGACACCGGAAACATAAGGAAATCTCT 266
Query 252 CTCCGATTCTTGGAAAATTCCTTACGGCATCACTTTCCCCCAAAAACCCTCCGGTCGTTT 311
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 267 CTCCGATTCTTGGAAAATTCCTTACGGCATCACTTTCCCCCAAAAACCTTCCGGTCGTTT 326
Query 312 CTCCGATGGCCGCGTCGCCACAGATTTTCTAGCAAGATACTTGGGTATAAAGTCACCAAT 371
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 327 CTCCGATGGCCGCGTCGCCACCGATTTTCTAGCAAGATACTTGGGGATAAAGTCACCAAT 386
Query 372 TCCGTACACGTGGAAGAATTACGCGGGAAAGGAACGGCTATTGTATGGAATGAATTATGC 431
|||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||
Sbjct 387 TCCGTACACGTGGAAGGATTATGCCGGAAAGGAACGGCTATTGTACGGAATGAATTATGC 446
Query 432 GTATGGAGGAACAGGAGTGTTTAAGACTAAAGATAATCCTTTGCCAAACATGACAACTCA 491
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 447 GTATGGAGGAACAGGAGTGTTTAAGACTAAAGATAATCCATTGCCAAACATGACAACTCA 506
Query 492 GATTGATTATTTCCAACGCGTACTCGCCGCCGGAAATATCTACTCTCCCTCCGATCTCCC 551
|||||||||||||||||| || ||||||||||| ||||||||||| || |||||||||||
Sbjct 507 GATTGATTATTTCCAACGTGTCCTCGCCGCCGGCAATATCTACTCGCCTTCCGATCTCCC 566
Query 552 CTCCTCCCTCGCTCTCGTTAGCGTTGCCGGCAACGACTACGCCTCTTTCTTGGCCCTAAA 611
||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 567 CTCCTCCCTCGCTCTGGTCAGCGTCGCCGGCAACGACTACGCCACTTTCTTGGCCCTAAA 626
Query 612 ACGCCCACTGACCGAGTTACCGGCATTCATGAAGCAAGTTGTTGATCAAATTGCGGTAAA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 627 ACGCCCACTGACCGAGTTACCGGCATTCATGAAGCAAGTTGTTGATCAAATTGCGGTTAA 686
Query 672 TGCGATGCGCATCCACAAGTTGGGAGTGAATAAGATATTGATTCCTTCAATGCAGCCACT 731
|| ||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||
Sbjct 687 CGCCATGCGCATCCACAAGTTGGGAGTAAATAAAATAGTAATTCCTTCAATGCAGCCACT 746
Query 732 CGGATGCCTCCCTAGCATTACAGTCTTTACTTCATTCCAACGTTGCAACGCCACAGACAA 791
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 747 CGGATGCCTCCCTAGCATCACAGTCTTTAATTCATTCCAACGTTGCAACGCCACAGATAA 806
Query 792 CGCATCAACCAAACTTCACAACTATTTGTTGCATAAAGCCGTCGCCAGGATTAACAATGA 851
||||||||| || ||||||||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 807 CGCATCAACGAATCTTCACAACTATTTGTTGCATAAAGCCATCGCTAGGCTTAATAATGA 866
Query 852 GACAAAGCCATCCACTTTCGTCGTTCTTGATCATTACAACGCCTTTTTGACCGTTTTCAA 911
|||||||||||||||||||||||||||||| || |||||||| || ||||| ||||||||
Sbjct 867 GACAAAGCCATCCACTTTCGTCGTTCTTGACCACTACAACGCGTTCTTGACTGTTTTCAA 926
Query 912 GAACAAAGGACCGGAACCTGGTGTTAT-GAGGTTTGGGAACCCGTTGAAACCGTGTTGTG 970
||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 927 GAACAAAGGACCGGAACCTGGTGTT-TCGAGGTTTGGGAACCCGTTAAAACCGTGTTGTG 985
Query 971 TCGGGGTCAACAGCAATTTCGACTGCTCAAACGTTGACGAGAAGGGTGAGAAGAAGTACA 1030
||||||||||||||| || |||||||||||| || || ||||||||||||||||||||||
Sbjct 986 TCGGGGTCAACAGCAGTTACGACTGCTCAAATGTGGATGAGAAGGGTGAGAAGAAGTACA 1045
Query 1031 CAATTTGTGAAGATCCAAAGGCTGCCTTCTTTTGGGACATCTTTCATCCGACTGAAGAAG 1090
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1046 TAATTTGTGAAGATCCAAAGGCTGCCTTCTTTTGGGACATCTTTCATCCGAGTGAAGAAG 1105
Query 1091 GATGGAGATCAGTTTACTCAGTTTTACACAAA-ACTCTAAAAGACG-TTTGGATTTAGGA 1148
|||||||||| |||||||||||| |||||||| | ||| |||| | |||||||||| ||
Sbjct 1106 GATGGAGATCTGTTTACTCAGTTCTACACAAACA-TCTCAAAG-CTATTTGGATTTAAGA 1163
Query 1149 GTAAGACTAATTATATGTTCTTAATTCTTTTTGATGTTTTTATATCTTCACTCAGTTGTC 1208
|||||||||||||||||||||| || |||| | | |||||||||||| |||||||||||
Sbjct 1164 GTAAGACTAATTATATGTTCTTC-TT-TTTT-G-T-TTTTTATATCTTTACTCAGTTGTC 1218
Query 1209 TCGGCTTGTCTTTGTAGTAAAGAGAGTTTCACAAGTCAAGCTCACTGGCTCGAGTCTCAA 1268
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 1219 TCGGCTTGTCTTTGTAGTAAAGAGAGTTTCACAAGTCAAGCTCACTGGTTCGAATGTCAA 1278
Query 1269 CACAA-ACAACTGGTGGATATTATAAGG-ATCGTCGAATTCATGGAT-AAAAA-----GC 1320
||| | | ||||||||| |||||||||| |||||||||||||| ||| ||||| ||
Sbjct 1279 CACCAGA-AACTGGTGGGTATTATAAGGGATCGTCGAATTCATAGATTAAAAAAAAAAGC 1337
Query 1321 AATGATTaaaaaaa 1334
|||||||| |||||
Sbjct 1338 AATGATTATAAAAA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65662312860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5