BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478321
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09940.1 | Symbols: MDHAR, ATMDAR3, MDAR3, MDAR2 | monodehyd... 2292 0.0
> AT3G09940.1 | Symbols: MDHAR, ATMDAR3, MDAR3, MDAR2 | monodehydroascorbate
reductase | chr3:3056375-3059148 REVERSE LENGTH=1497
Length=1497
Score = 2292 bits (1241), Expect = 0.0
Identities = 1393/1464 (95%), Gaps = 20/1464 (1%)
Strand=Plus/Plus
Query 2 TTTATTCATTAATGGCGGAAGAGAAAAGCTACAAGTACGTGATCATTGGAGGTGGTGTAG 61
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 TTTATTAATTAATGGCGGAAGAGAAAAGCTACAAGTACGTGATCATTGGAGGTGGTGTAG 94
Query 62 CCGGCGGTTACGCGGCGAGAGAGTTTTCG-AATCAGGGCCTGAAGCCTGGTGAACTCGCA 120
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 95 CCGGCGGTTACGCGGCGAGAGAG-TTTAGTAATCAGGGCCTGAAGCCTGGTGAACTCGCA 153
Query 121 ATCATTTCCAAGGAACCAGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGCATATATC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 154 ATCATTTCCAAGGAACCAGTGCCTCCTTTTGAGCGTCCTGAACTAACCAAGGTATATATT 213
Query 181 GACCTCGAAGTCAATCCGACCCTTGCAAAGATCTATGTCTGTGCTGGAACTGGAGAAGCG 240
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 214 GACCTCGAAGTCAATCCGACCCTTGCAAATATCTATGTTTGTGCTGGAACTGGAGAAGCG 273
Query 241 AAGCAGTACCCTAACTGGTACAAAGAGAAAGGGATTGATCTAATTGTGAGCACAGAGATA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 274 AAGCAGTACCCTAACTGGTACAAAGAGAAAGGGATTGATCTAATTGTGGGCACAGAGATA 333
Query 301 GTCAAAGCAGATCTTGCTTCGAAGACACTTGTTAGTGATGATGGAAAAATTTACAAGTAC 360
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 334 GTCAAAGCAGATCTTGCTTCAAAGACACTTGTTAGTGATGATGGCAAAATTTACAAGTAC 393
Query 361 CAAACTTTGCTAATTGCAACCGGTTCTACTAACATAAGATTGTCAGAAATTGGCGTCCAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CAAACTTTGCTAATTGCAACCGGTTCTACTAACATAAGATTGTCAGAAATTGGCGTCCAA 453
Query 421 GAAGCAGATGTTAAGAATATATTCTACCTAAGAGAAATCGAAGATAGTGATGAGCTTTCG 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 454 GAAGCAGATGTTAAGAATATATTCTACCTAAGAGAAATCGAGGATAGTGATGAGCTTGCC 513
Query 481 TTTGCTATGGAACTATATGTGCAAAGGGGAAAGGCCGTGGTTATTGGCGGCGGTTTCTTA 540
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 514 TTGGCTATGGAACTATATGTGCAAAGGGGAAAGGCCGTCATCATTGGCGGCGGTTTCTTA 573
Query 541 GGGCTTGAGATAAGTTCTGCTCTAAGGGCTAATAATCATGAAGTGACCATGGTTTTTCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GGGCTTGAGATAAGTTCTGCTCTAAGGGCTAATAATCATGAAGTGACCATGGTTTTTCCA 633
Query 601 GAACCTTGGATTATACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGGGTTAC 660
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 634 GAACCTTGGCTTGTACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGAGTTAC 693
Query 661 TGTGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCCACTGGATTCAGCACCAAC 720
| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 694 TATGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCAACTGGATTTAGCACCAAC 753
Query 721 TCAGATGGAGAGGTCACGGAGGTGAAACTAGAGGATGGAAGAACCCTAGAAGCTAACATA 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCAGATGGAGAGGTCACTGAGGTGAAACTAGAGGATGGAAGAACCCTAGAAGCTAACATA 813
Query 781 GTGGTCGCCGGTGTCGGTGCTAGACCGGTCACCTCACTCTTCAAAGGCCAAGTTGAAGAG 840
|| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 814 GTTGTCGCTGGTGTCGGTGCTAGACCGGCCACCTCACTCTTCAAAGGCCAACTTGAAGAG 873
Query 841 GAGAAGGGTGGAATAAAGACTGATGGATTCTTCAAAACAAGTGTACCTGATGTATACGCA 900
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 874 GAGAAGGGTGGAATAAAGACTGATGGGTTCTTCAAAACAAGTGTGCCTGATGTATACGCA 933
Query 901 CTTGGAGATGTAGCTACATTCCCCATGAAAATGTATGGCGGGATGAGGCGTGTTGAACAC 960
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 934 CTTGGAGATGTAGCCACATTCCCAATGAAAATGTATGGCGGGACGAGGCGTGTTGAACAC 993
Query 961 GCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAAGCAATCAAAGCGGCTGAAGAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 994 GCCGACAATGCTCGCAAATCTGCTGCACAAGCAGTCAAAGCAATCAAAGCGGGTGAAGAA 1053
Query 1021 GGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGGTTTTTCAATCTC 1080
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1054 GGGAAAACGATCCCAGATTACGATTATCTTCCCTATTTCTACTCTCGATTTTTCAAACTA 1113
Query 1081 TCGTGGGAATTCTATGGGGACAATGTTGGAGAATCTGTACTGTTTGGAGATAATGACCCG 1140
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1114 TCGTGGGAATTCTATGGGGAAAACGTTGGAGAATCTGTACTGTTTGGAGATAATGACCCG 1173
Query 1141 AAATCTCCCAAGCCGAAGTTTGGGACGTATTGGGTTAAAGATGGGAAAGTAGTAGGGGTG 1200
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1174 AAATCTCCAAAGCCAAAGTTTGGGACGTATTGGGTTAAAGATGGGAAAGTAGTAGGAGTG 1233
Query 1201 TTTCTAGAAGGAGGAACTCAAGAGGAACACAAGGCTATTGCTAAAGTGGCACGAGCACAA 1260
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TTCCTAGAAGGAGGTACTCAAGAGGAACACAAGGCTATTGCTAAAGTGGCACGAGCACAA 1293
Query 1261 CCTTCCGTTGAGAGTCTTGACGTGTTATCAGAGGAAGGCCTTTCTTTCGCCACCAAGTTC 1320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1294 CCTTCCGTTGAGAGTCTTGACGTGTTATCCGAGGAAGGCCTTTCTTTCGCCACCAAGTTC 1353
Query 1321 TATAGCAGCTAGTCTCTTTGAGACATTGGGTCTTGTTCTTGGGTATAAGTCGCATTGATT 1380
||||||| || |||||||||||||||||||||||| | | ||| |||||||
Sbjct 1354 TATAGCACCT---CTCTTTGAGACATTGGGTCTTGTT-T-----A---GTCACATTGAT- 1400
Query 1381 GATGTAATAATCTCCTTTGTCCTTGATTTCAT--CGAGCCCCTATTATATTTGGCAAAAT 1438
| | |||||||||||||||| |||||||||| |||||||||||| ||||| | |||||
Sbjct 1401 G-T--AATAATCTCCTTTGTCTTTGATTTCATATCGAGCCCCTATTGTATTTCGAAAAAT 1457
Query 1439 AAATTAGATATAATAATGCATTTT 1462
|||||| |||||||||||||||||
Sbjct 1458 AAATTAAATATAATAATGCATTTT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5