BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478325
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09980.1 | Symbols: | Family of unknown function (DUF662) ... 1568 0.0
AT5G03660.1 | Symbols: | Family of unknown function (DUF662) ... 479 2e-134
> AT3G09980.1 | Symbols: | Family of unknown function (DUF662)
| chr3:3069231-3071429 FORWARD LENGTH=948
Length=948
Score = 1568 bits (849), Expect = 0.0
Identities = 915/947 (97%), Gaps = 4/947 (0%)
Strand=Plus/Plus
Query 2 TTCAAAAAGAAAGCTCACTTAGCTATTTTCTCTACCACAGAAGAATCTAGACCCagagag 61
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTCAAAAAGAAAGCTCAGTTAGCTATTTTCTCTACCACAGAAGAATCTAGACCCAGAGAG 64
Query 62 agagagagagaaatagtgagagatcaattacgagagagtcaaagagaggagaTTTCAGTG 121
||||||||||| | || ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 65 AGAGAGAGAGAGAGAGAGAGAGATCAGTAACGAGAGAGTCAAAGAGAGGAGATTTCAGTG 124
Query 122 AAGATGAAGGAGATGCAGGCAATAGAGTCGTCGCAGTCGACGACGGTGGCTCCGGCGGTG 181
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 125 AAGATGAAGGAGATGCAGGCAATAGAGACGTCGCAGCCGACGACGGTGGCTCCGGCGGTG 184
Query 182 CATAGCCGACAATTGGGAGCTCAGTTATCGGGAAGTATGAGTTTCAGCAGCCAAATGTCG 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 185 CATAGCCGACAATTGGGAGCTCAGTTGTCGGGAAGTATGAGTTTCAGCAGCCAAATGTCG 244
Query 242 AAAGAAGACGAGGAGATGTCTAGGACTGCGTTATCTGCGTTTAGAGCGAAAGAGGAAGAG 301
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 245 AAGGAAGATGAGGAGATGTCTAGAACTGCGTTATCTGCGTTTAGAGCGAAAGAAGAAGAG 304
Query 302 ATCGAGAAGAAGAAGATGGAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTTGAA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 305 ATCGAGAAGAAGAAGATGGAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTCGAA 364
Query 362 GAAGAAACTAAGCGTCTTGCTTCGATCCGTGAGGAACTTGAAGGTTTAGCTGATCCCATG 421
||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 365 GAAGAGACTAAGCGTCTTGCTTTGATCCGTGAGGAACTTGAAGGATTAGCTGATCCCATG 424
Query 422 AGGAAAGAAGTTGCTTTGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCA 481
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCA 484
Query 482 TTGGGGCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAAC 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTGGGCCATACAGTTCAGAAAAAGGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAAC 544
Query 542 GAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGTTGGTGGGAGAAAGC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGTTGGTGGGAGAAAGC 604
Query 602 GAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGA 664
Query 662 CTTTGAATCCAAGACAGTACAAGAACTTCTTGGGCCAGAGATCATTCTCTGAGTGTTTTA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CTTTGAATCCAAGACAGTACAAGAACTTCTTGGGCCAGAGATCATTCTCTGAGTGTTTTA 724
Query 722 ACTCTACGTTTAGGTTTGGTGGTGGTGAATGTAATTTATATTTTATAATCGTCGTGTGTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ACTCTACGTTTAGGTTTGGTGGTGGTGAATGTAATTTATATTTTATAATCGTCGTGTGTT 784
Query 782 ATATTACTACTACTATTATTATCTTTTGTTAGGGTTTCTTGGAGAATT-ATAAGGGTAAT 840
||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 785 ATATTACTACTACAATTATTATCTTT-GTTAGGGGTTCTTGGAGAATTTATAAGTGTAAT 843
Query 841 GTGGtttttttAGGAAGTAACTTCAAAAAATACTCATCGAGACAGGTTTGTAACTAAACA 900
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 844 GTGGTTTTTTTAGGAAGTAACTTCAAAAAATACTCATCAAGACAGGTTTGTAACTAAACG 903
Query 901 cttctttttctcttttctctgaaccatttttctctctttATTGCCCT 947
|||||| |||| ||| |||||||| || ||||||||||||||| |||
Sbjct 904 CTTCTTCTTCT-TTT-CTCTGAACTATCTTTCTCTCTTTATTGTCCT 948
> AT5G03660.1 | Symbols: | Family of unknown function (DUF662)
| chr5:937977-940058 FORWARD LENGTH=860
Length=860
Score = 479 bits (259), Expect = 2e-134
Identities = 394/458 (86%), Gaps = 13/458 (3%)
Strand=Plus/Plus
Query 202 TCAGTTATCGGGA-AGTATGAGTTTCAGCAGCCAAATGTCGAAAGAAGACGAGGAGATGT 260
||||||||| ||| |||||||| ||||| ||||||||| ||| |||||||| ||| |||
Sbjct 151 TCAGTTATC-GGAGAGTATGAGCTTCAGTAGCCAAATGAAGAAGGAAGACGATGAGTTGT 209
Query 261 CTAGGACTGCGTTATCTGCGTT-TAGAGCGAAAGAGGAAGAGATCGAGAAGAAGAAGATG 319
| | || || || || ||||| || || ||||| || |||||||||||||||||||||
Sbjct 210 CGATGAAAGCTTTGTCGGCGTTCAAG-GCCAAAGAAGAGGAGATCGAGAAGAAGAAGATG 268
Query 320 GAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTTGAAGAAGAAACTAAGCGTCTT 379
||||| || ||||| ||||||||||||||||||||||||||||| || | ||||||||
Sbjct 269 GAGATCAGAGAAAGAGTTCAAGCTCAGCTTGGTCGTGTTGAAGATGAGTCCAAGCGTCTC 328
Query 380 GCT-TCGATCCGTGAGGAACTTGAAGGTTTAGCTGATCCCATGAGGAAAGAAGTTGCTTT 438
||| | ||| || ||||||||||||||||| ||||||||||||||||| |||||| || |
Sbjct 329 GCTAT-GATTCGCGAGGAACTTGAAGGTTTTGCTGATCCCATGAGGAAGGAAGTTACTAT 387
Query 439 GGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCATTGGGGCATACAGTTCA 498
||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 388 GGTGAGGAAGAAGATTGATTCTCTCGACAAAGAATTAAAGCCATTGGGGAATACAGTTCA 447
Query 499 GAAAAAGGAA-CGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGA 557
|||||||||| | ||||||||| || ||||||||||||||||| |||||||||| |||||
Sbjct 448 GAAAAAGGAAAC-AGAGTACAAGGATGCTCTTGAAGCATTCAATGAAAAGAACAAGGAGA 506
Query 558 AGGTGCAGCTAATCACCAGGCTA-ATGGAGTTGGTGGGAGAAAGCGAAAAGATG-AGAAT 615
||||| |||| ||||||| |||| | |||||||| |||||||||||| || || || |
Sbjct 507 AGGTGGAGCTGATCACCAAGCTACA-GGAGTTGGAGGGAGAAAGCGAGAA-ATTCAGGTT 564
Query 616 GAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTA 653
||||||||||| ||||||||||||||||| ||| |||
Sbjct 565 CAAGAAGCTGGAGGAGCTAAGCAAGAACATTGAT-CTA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5