BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478326
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09990.1 | Symbols: | Nucleoside transporter family protein... 1803 0.0
> AT3G09990.1 | Symbols: | Nucleoside transporter family protein
| chr3:3072662-3075142 REVERSE LENGTH=1254
Length=1254
Score = 1803 bits (976), Expect = 0.0
Identities = 1170/1262 (93%), Gaps = 20/1262 (2%)
Strand=Plus/Plus
Query 1 ATGGATACTAGCATTGTAGCTGCAACGACCAATCCTAA-GGGAAAATACTGTGCTCTTGC 59
||||||||||||||| |||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct 1 ATGGATACTAGCATTCTAGCTGTGACGACCAATCCTAAGGGGAAAA-ACTATGCTCTTGC 59
Query 60 TGTTTGTTGGCTTCTTGG-GATTGGATGCCTTTTAGCATGGAACAGTATGCTCACAATTG 118
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTTGTTGGCTTCTTGGCG-TTGGATGCCTTTTAGCATGGAACAGTATGCTCACAATTG 118
Query 119 TGGATTATTACGCTTATTTGTTCCCCCGGTATCATCCATCGA-ATATCATTACCATAATT 177
|||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||
Sbjct 119 TGGATTATTACGCTTATTTGTTCCCCTGGTATCATCCATCGAGA-ATCCTTACCATAATT 177
Query 178 TATCAGTCATTTGCTATTGGAGCACTTAGTGTTCTTGTTCACAAAGAGGCAAGACTCAAT 237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TATCAGTCATTTTCTATTGGAGCACTTAGTGTTCTTGTTCACAAAGAGGCAAGACTCAAT 237
Query 238 ACCCGACGTCGAAATTTGTTTGGATACAGTCTCTTTTCCCTTGGCTCTCTTGCTGTCCTA 297
||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 238 ACCAGACGTCGAAATTTGTTTGGATATAGTCTTTTTTCCCTTGGTTCTCTTGCTGTCCTA 297
Query 298 GTGTTAGATTTAGCTACTTCGGGAAGAGGAGGGATTGGCTCTTTCATTGGAGTTTGTGTC 357
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 298 GTGTTAAATTTAGCTACTTCGGGGAGAGGAGGGATTGGCTCTTTCATTGGAGTATGTGTC 357
Query 358 ATTAGTGCGGCCTTTGGTCTAGGGGATGCACATG-TTCTCGGTGGAATGATTGGAGATCT 416
||||||||||| |||||||||| ||||||||||| || | ||||||||||| ||||||||
Sbjct 358 ATTAGTGCGGCGTTTGGTCTAGCGGATGCACATGTTTAT-GGTGGAATGATCGGAGATCT 416
Query 417 TTCTATGATGACACCAAAGTTTCTTCAGTCGTTTCTAGCTGGCTTAGCTGCTTCAGGAGC 476
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCTATGATGACACCCGAGTTTCTTCAGTCGTTTCTAGCTGGCTTAGCTGCTTCAGGAGC 476
Query 477 ATTAACCTCCGGCCTGAGGCTGGTCACAAAAGCAGCATTCAAAAACTCCAGGGATGGCCT 536
||||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 477 ATTAACCTCTGGACTGAGGCTGGTCATAAAAGCAGCATTCAAAAACTCAAGGGATGGCCT 536
Query 537 TCGCAAAGGAGCTATTTTATTCTTTGCCGTGTCTGCGTCGTTTGAGTTGGTTTGCGTCCT 596
|||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 537 TCGCAAAGGAGCTACTTTATTCTTTGCCATGTCTGCGTCGTTCGAGTTGGTTTGCGTTCT 596
Query 597 GTTATATGCATTTGTATTTCCCAGGATTCCGATCGTGAAGTACTACCGGGGAGAGGCTAT 656
||||||||||| ||||||||||||||| ||| ||||||||||||| || | | |||||||
Sbjct 597 GTTATATGCATATGTATTTCCCAGGATACCGGTCGTGAAGTACTATCGCGCAAAGGCTAT 656
Query 657 CCTCCAAGGAGCG-GAAACTGTA-GCGGCCGACCTTGCAGCTGGAGGAGGCACCCAAGTG 714
| | |||||| || | ||||||| | |||||||||||||||| ||||||| ||||||
Sbjct 657 CATTCAAGGATCGCG-AACTGTATG-GGCCGACCTTGCAGCT---GGAGGCATCCAAGT- 710
Query 715 GC-ACC---AACGCAGGACGTGGAAGCCCCACGATATGTTCGTCGGCTAAACAAAAGAGA 770
|| ||| ||| ||||||| ||||||| | |||||| || ||||||||||||| ||||
Sbjct 711 GCAACCAATAACCCAGGACGAGGAAGCCTTAAGATATGATCATCGGCTAAACAAAGGAGA 770
Query 771 CTTGATGCTACTCTACTCAGATCTTGCAGTTACCTTGTTCTCGGTGTATGTACTGACGTT 830
||||||| |||| |||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 771 CTTGATGTTACTGTACTCAGATCTTGCGGTTACCTTGTTCTTAGTGTATCTACTGACGTT 830
Query 831 TAGCATTTTCCCTGGATTTCTATCGGAGGACACGGGAAAACACAGTTTAGGAGACTGGTA 890
|||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 831 TAGCATTTTCCCTGGATTTCTATCGGAGGATACGGGAAAATACAGTTTAGGCGACTGGTA 890
Query 891 TGCACTAGTGTTGATAGCAGTGTTCAACGTGTCGGATTTGGTTGGGAGATACGTTCCCGT 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 891 TGCACTAGTGTTGATAGCAGTGTTCAACGTGTCGGATTTGGTTGGGAGATACGTTCCCAT 950
Query 951 GGTCAAGAAGTTGAAGATGAAGTCGAGGAGAGGTCTTTTGATAACATCATTGGGACGTCT 1010
||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||||
Sbjct 951 GGTCAAGAAGTTGAAGATGAAGTCGAGGAAATGTCTCTTGATAACGTCATTGGGACGTCT 1010
Query 1011 CTTGTTGATTCCAGCTTTCAACATCACAGGCATATATGGAAGCCAAGGCTGGATGATTTC 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTTGTTGATTCCAGCTTTCAACATCACAGGCATATATGGAAGCCAAGGCTGGATGATTTT 1070
Query 1071 CTTGATGTCCGTTTTAGGATTTAGCAATGGATATTTGACTGTTTGTGTCATAACATCAGC 1130
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CTTGATGTCCGTTTTGGGATTAAGCAATGGATATTTGACTGTTTGTGTCATAACATCAGC 1130
Query 1131 CACACATGATTTATTGGCACCGGAGCAAAATGCACTAGGAAACTTGTTGGTGTTCTTTAT 1190
| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1131 CCCATATGATTTATTGGCACCGGAGCAAAATGCACTAGGAAACTTGTTGGTGTTATATAT 1190
Query 1191 TTCTGGGGGGATGTTTGTAGGAGTCGCTTGTGATTGGCTTTGGTTAATTGGTAAAGATTG 1250
|| ||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1191 TTGTGGAGGGATGTTTGCAGGAGTCGCTTGTGATTGGCTTTGGTTAGTTGGTAAAGATTG 1250
Query 1251 GT 1252
||
Sbjct 1251 GT 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5