BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478332
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10040.1 | Symbols: | sequence-specific DNA binding transcr... 2242 0.0
> AT3G10040.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:3096415-3098071 REVERSE LENGTH=1657
Length=1657
Score = 2242 bits (1214), Expect = 0.0
Identities = 1521/1657 (92%), Gaps = 69/1657 (4%)
Strand=Plus/Plus
Query 1 AACTTCTTCAACACAAACTAAACAAAACTCAAAAGTAAGAACTCGAAGATACTGTAGTTA 60
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 10 AACATCTTCAACACAAACTAAACAAAACTTAAAAGTAAGAACTCGAAGATACTGTACTTA 69
Query 61 CAAATTCTTGTCGGAATTCTCTTACTTGGTCGGAAATTTCGAAATCTGGGTTTGTGGGAT 120
||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 70 CAAATTCCTGTCGGAATTCTCTTACTTCGTCGGAAA-TTCGAAATCTGGGTTTGTGGGAT 128
Query 121 T-CGTGTTGATTTATCTACTATTGTTTCCAATTTTCAAATTTTCT-T-CAATTTAGGGTT 177
| ||||||||||||||||| ||||||||||| |||| |||||| | | ||||||||||||
Sbjct 129 TCCGTGTTGATTTATCTACCATTGTTTCCAAGTTTC-AATTTTTTATCCAATTTAGGGTT 187
Query 178 CAGAGTTTGATGGAATCGAATGTGATGTTCTCTGGGTTTAGCCCAAGAATGTTGAGCTTA 237
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 188 CAGTGTTTGATGGAATCGAATGTGATGTTCTCTGGGTTTAGTCCAAGAATGTTGAGCTTA 247
Query 238 GAAATGCCGCAAAATCCACAAAAT--CC--AGTTC-A---A-TTCCAGCATCCTCATCCT 288
||||||||||||||||||| |||| || | ||| | | ||||||||||||||||||
Sbjct 248 GAAATGCCGCAAAATCCACCAAATCCCCAAAATTCAATTCAGTTCCAGCATCCTCATCCT 307
Query 289 TACACCACCTCCGGCGACCAACAAACTCAGCCGCCGATGAAACCCTTATACCCATACGCC 348
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 308 TACACCACCTCCGGCGACCAACAAACTCAGCCGCCGATAAAATCCTTATACCCATACGCC 367
Query 349 TCAAAACCCAAACAATTGTCACCCATAAGCGGTGGC-G--GCGACGACGAAGATCGCGGG 405
||||||||||||||| |||||||||| ||||||||| | |||||||||| |||||||||
Sbjct 368 TCAAAACCCAAACAAATGTCACCCATTAGCGGTGGCGGTTGCGACGACGAGGATCGCGGG 427
Query 406 TCGGGTTCCGGATCCGGTTGCAACCCTGAAGACAGCGCGGGAACCGACGGGAAGAGGAAA 465
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 428 TCGGGTTCCGGATCCGGTTGCAACCCTGAAGACAGCGCGGGAACTGACGGGAAGAGGAAA 487
Query 466 TTGTCTCAATGGCATAGAATGAAATGGACGGATACAATGGTTCGTCTTTTGATCATGGCG 525
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 488 TTGTCACAATGGCATAGAATGAAATGGACGGATACAATGGTTAGGCTTTTGATCATGGCG 547
Query 526 GTTTTCTACATCGGCGACGAAGCTGGTTTAAACGATCCAATTGACGCCAAGAAAAAGA-C 584
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
Sbjct 548 GTTTTCTACATCGGTGACGAAGCTGGTTTAAACGATCCAGTCGACGCCAAGAAAAAGACC 607
Query 585 --C---GGCGGTGGCGGC------GGAGGAGGGATGTTGCAGAAGAAAGGGAAGTGGAAA 633
| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 608 GGCGGTGGCGGTGGCGGCGGAGGAGGAGGAGGGATGTTGCAGAAGAAAGGGAAGTGGAAA 667
Query 634 TCAGTGTCGAGAGCTATGGTGGAGAAAGGTTTCTCTGTGTCGCCACAACAATGTGAAGAC 693
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 TCAGTGTCGAGAGCTATGGTGGAGAAAGGTTTCTCTGTGTCACCACAACAATGTGAAGAC 727
Query 694 AAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTTAACGACATTCTTGGTAAAGGAATC 753
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 AAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTTAACGATATTCTTGGTAAAGGAATC 787
Query 754 GCTTGTCGTGTCGTAGAGAATCAAGGATTGTTAGAGAGTATGGATCATTTGACTGCGAAG 813
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 788 GCTTGTCGTGTCGTTGAGAATCAAGGATTGTTAGAGAGTATGGATCATTTGACTCCGAAG 847
Query 814 TTGAAAGATGAAGTCAAGAAGTTGCTTAATTCTAAGCATCTTTTCTTTAGAGAGATGTGT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTGAAAGATGAAGTCAAGAAGTTGCTTAATTCTAAGCATCTTTTCTTTAGAGAGATGTGT 907
Query 874 GCTTATCATAATAGTTGTGGTCATCTTGGTGGTCACGA-C--CAACCACCGCAACAGAAT 930
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 908 GCTTATCATAATAGTTGTGGTCATCTTGGTGGTCATGACCAACAACCACCGCAACAGAAT 967
Query 931 -C-----CGATTTCGATTCCGAGT---CAGCAGAACTGTTTTCACGCGGCGGAAGCAGGG 981
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 968 CCTATTTCGATTCCGATTCCGAGTCAGCAGCAGAACTGTTTTCACGCGGCGGAAGCAGGG 1027
Query 982 AAAATGGCGAGAATTGCGGAGCGTGTGGAGGTGGAGGAGGAAGTAGAGTCTGATATGGCG 1041
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1028 AAAATGGCGAGAATTGCGGAGAGGGTGGAGGTGGAGGAGGAAGTAGAGTCTGATATGGCG 1087
Query 1042 GGGGATTCGGAGTCTGAGATGGAGGAATCAGAGGAGGAGGTGGAAGAAGAGACGAGGAAG 1101
| |||||||||||| |||||||||||||| | || |||||||||||||||||||
Sbjct 1088 GAGGATTCGGAGTCAGAGATGGAGGAATC-----A-GA---GGAAGAAGAGACGAGGAAG 1138
Query 1102 AAGCAGAGGATATCAACGGCGGTGAAGCGGTTGAGGGAAGAAGCGACGCGTGTAGTGGAA 1161
|||| ||||||||| |||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 1139 AAGCGGAGGATATCGACGGCGGTGAAGAGGTTGAGGGAAGAAGCGGCAAGTGTAGTGGAA 1198
Query 1162 GATGTTGGGaagagcgtgtgggagaagaaagagtggatgaggagaaagatgttggagatt 1221
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 GATGTTGGGAAGAGTGTGTGGGAGAAGAAAGAGTGGATAAGGAGAAAGATGTTGGAGATT 1258
Query 1222 gaggagaagaagaTTGGGTATGAGTGGGAAGCAGtggagatggagaagcagagagtgaag 1281
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 GAGGAGAAGAAGATTGGGTATGAGTGGGAAGGAGTGGAGATGGAGAAGCAGAGAGTGAAG 1318
Query 1282 tggatgagatatagaagcaagaaggagagagagatggagaagGCTAAGCTTGACAATCAG 1341
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGGATGAGATATAGGAGCAAGAAAGAGAGAGAGATGGAGAAGGCTAAGCTTGACAATCAG 1378
Query 1342 CGACGGAGGCTTGAGACGGAGAGGATGGTTCTGAAT-TTACGGCGGAGTGAGATGGAGTT 1400
|||||||||||||||||||||||||| |||| | | |||||||||||||| || |||||
Sbjct 1379 AGACGGAGGCTTGAGACGGAGAGGATGATTCTCA-TGTTACGGCGGAGTGAAATTGAGTT 1437
Query 1401 GAATGAGTTACAGTCTTCGGGTAAACAGGTTGACCCGAGTTCCGCTAAGGGGTGAT-CGT 1459
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct 1438 GAATGAGTTACAGTCTTCGGGTACACGGGTTGACCCGAGTTCCGCTAAGGGGTGATGC-T 1496
Query 1460 GATTAGTGTTTCACAGATTAGAAATTTTAGA-AATTTT-TAGTTTCTAATGTGGAGGATG 1517
||||||| ||| | ||||||| ||||| | || ||| ||||||||||||| |
Sbjct 1497 GATTAGTATTT-AG-GATTAGAGATTTTTTACAACTTTGTAGTTTCTAATGT------T- 1547
Query 1518 CTAGGATTCTCACGTTTTGG-GACAGTAATCAGCAAACTAAAATCTTTAAAGTATGGACT 1576
|||||||||||||||| | |||| || ||| ||| |||| |||| |||||||| |||
Sbjct 1548 --AGGATTCTCACGTTTTAGTGACATTAGGCAGTAAATTAAA-TCTTAAAAGTATGTACT 1604
Query 1577 ATTGTAGACAGAAGGTCTTTAATCAGCAAATTGATTA 1613
|||||||||| ||||||||||||||||||||||||||
Sbjct 1605 ATTGTAGACAAAAGGTCTTTAATCAGCAAATTGATTA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5