BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478335
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10070.1 | Symbols: TAF12, TAFII58 | TBP-associated factor 1... 3049 0.0
AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 191 2e-47
> AT3G10070.1 | Symbols: TAF12, TAFII58 | TBP-associated factor
12 | chr3:3103880-3106815 REVERSE LENGTH=1952
Length=1952
Score = 3049 bits (1651), Expect = 0.0
Identities = 1861/1959 (95%), Gaps = 27/1959 (1%)
Strand=Plus/Plus
Query 1 ACATTCACAACCTTCTCATGGATCAGCCACGGCAAAGCACGACGGCGTCTCAGCCACCGG 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ACATTCACAACCTTTTCATGGATCAGCCACGGCAAAGCTCGACGGCGTCTCAGCCACCGG 60
Query 61 AAACACCGCCTCAGCCGTCGGATTCAGCATCGAAACCAGCGACTTTAACACAGATTCAAC 120
||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 61 AAACACCTCCTCAGCCGTCGGA-T-----TCGAAACCATCGACTTTAACACAGATTCAAC 114
Query 121 CACCGCCTTCCACAAATCCGAGTCCCACCTCCGTTGTTTCCTCTATTCCTTCTTCCCCAG 180
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 115 CAACGCCTTCCACAAATCCGAGTCCCTCCTCCGTTGTTTCCTCTATTCCCTCTTCCCCAG 174
Query 181 CTCCACAATCACCATCGCTCAATCCAAACCCTAATCCTCCTCAATACGCGCGTCCGGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 CTCCACAATCACCATCGCTCAATCCAAACCCTAATCCTCCTCAATACACGCGTCCGGTGA 234
Query 241 CATCTCCGGCGACGCAACAGCAGCAACATCTCCCCCAGCCTTTGGTACGGCCACCTCCGC 300
|||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 235 CATCTCCGGCGACGCAACAGCAGCAACATCTCTCCCAGCCTTTAGTACGGCCGCCTCCGC 294
Query 301 AGGCGTACTCGAGACCATGGCAACAACACTCCTCTTACACTCACTTCTCCTCCCCTTCGT 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 AGGCGTACTCTAGACCATGGCAACAACACTCCTCTTACACTCACTTCTCCTCCGCTTCGT 354
Query 361 CGCCATTGTTATCTTCCTCATCAGCTCCGGCATCTTCGTCTTCGTCTTTACCTATTACTG 420
||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||
Sbjct 355 CGCCATTGTTATCTTCCTCATCAGCGCCAGCCTCTTCGTCTTCGTCTTTACCTATTAGTG 414
Query 421 GGCAACAAAGGGGTGGCATGGCGATTGGCGTTCCAGCTTCCCCAATTCCGAGTCCTTCTC 480
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 415 GGCAACAAAGAGGTGGTATGGCGATTGGCGTTCCGGCTTCCCCAATTCCGAGTCCTTCTC 474
Query 481 CTACTCCTTCTCAACATACGCCTTCTGCTTTTCCCGGCTCTTTTGGGCAGCAGTACGGCG 540
|||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 475 CTACACCTTCTCAACATTCGCCTTCTGCTTTTCCCGGCTCTTTTGGGCAACAATACGGCG 534
Query 541 GATTAGGTCGTGGAACTGTTGGAATGTCAGAAGCTACGTCCAATTCAAGTGCCCCTCAGG 600
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 535 GATTAGGTCGTGGAACTGTTGGAATGTCAGAAGCTACGTCCAATACAAGTTCCCCTCAGG 594
Query 601 TTAGGATGATGCAAGGATCTCAGGGAATTGGGATGATGGGGACACTTGGCTCAGGTTCCC 660
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 595 TTAGAATGATGCAAGGAACTCAGGGAATTGGGATGATGGGAACACTTGGCTCAGGTTCCC 654
Query 661 AAATGAGACCGAGTGGGATGGCTCAGCATCAACAGAGACCAACTCAATCGTCTCTAAGAC 720
|||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 655 AAATAAGGCCGAGTGGGATGACTCAGCACCAACAGAGACCAACTCAATCGTCTCTAAGGC 714
Query 721 CAGCTTCCTCCCCAAGTACCCAATCTCCTGTTGCCCAAAACTTTCAAGGACATAGCCTTA 780
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 715 CAGCTTCCTCCACAAGTACCCAATCTCCTGTTGCTCAAAACTTTCAAGGACATAGCCTTA 774
Query 781 TGAGACCTTCACCTATTGGTTCTCCTAGTGTGCAATCTACTGGTGCATCACAACAAAGCT 840
||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 775 TGAGACCTTCACCTATTAGCTCTCCTAATGTCCAATCTACTGGTGCATCACAACAAAGCT 834
Query 841 TGCAAGCTATTAATCAACCTTGGTTATCATCTACTCCCCAAGGGAAGCCGCCTTTGCCAC 900
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGCAAGCTATCAATCAACCTTGGTTATCATCTACTCCCCAAGGGAAGCCGCCTTTGCCAC 894
Query 901 CTCCTTCGTATAGACCACAAGTAAATTCTCCCTCCATGCAACAAAGACCTCATATTCCTC 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 CTCCTTCGTATAGACCACAAGTAAATTCTCCCTCTATGCAACAAAGACCTCATATTCCTC 954
Query 961 AGCAACATCTTTCTACGTCAGCAGCAACTTCACAGCCTCAGCAACTACAATCTCAACAAC 1020
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 955 AGCAACATATTTCTACGTCAGCAGCAACTCCACAGCCTCAGCAACAACAATCTCAACAAC 1014
Query 1021 AACATCAGCCTCAAGAGCAACTTCAACAATTGAGATCTCCGCAGCAGCCTTTACCTCACC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 AACATCAGCCTCAAGAGCAACTTCAACAATTGAGATCTCCGCAGCAGCCTTTAGCTCACC 1074
Query 1081 CACATCAACCAACCCGGGTCCAAGGGTTGGTAAATCAGAAAGTTACTTCTCCGGTAATGC 1140
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 CACATCAACCAACCCGGGTCCAAGGTTTGGTAAATCAGAAAGTTACTTCTCCGGTAATGC 1134
Query 1141 CGAGCCAGCCTCCTGTGGCTCAACCAGGAAACCATGCTAAAACAGTTTCTGCAGAGAATG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 CGAGCCAGCCTCCTGTGGCTCAACCAGGAAACCATGCTAAAACAGTTTCTGCAGAGACCG 1194
Query 1201 AGACATCTGATGATCGTATCCTGGGGAAACGAAGCATCCATGAGCTACTTCAACAGATTG 1260
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGCCGTCTGATGATCGTATCCTGGGGAAACGAAGCATCCATGAGCTACTTCAACAGATTG 1254
Query 1261 ACCCGTCAGAGAAATTGGATCCAGAGGTTGAAGACATCCTTGCTGATATTGCTGAAGATT 1320
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1255 ACCCGTCAGAGAAATTGGATCCAGAGGTTGAAGACATCCTTTCTGATATTGCTGAAGATT 1314
Query 1321 TTGTGGAGTCAATCACAACTTTTGGCTGTTCTTTAGCCAAGCATAGAAAGTCAGATACTC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1315 TTGTGGAGTCAATCACAACTTTTGGCTGTTCTTTAGCCAAGCATAGAAAGTCAGATATTC 1374
Query 1381 TAGAGGCTAAGGACATCTTGCTCCATGTTGAAAGAAACTGGAATATCAGGCCTCCTGGTT 1440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1375 TAGAGGCTAAGGACATCTTGCTCCATGTTGAAAGAAACTGGAATATTAGGCCTCCTGGTT 1434
Query 1441 TTAGCAGTGATGAGTTCAAGACATTTCGAAAGCCATTGACAACAGATATTCACAAAGAGC 1500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1435 TTAGCAGTGATGAGTTCAAGACATTTCGGAAGCCATTGACAACAGATATTCACAAAGAGC 1494
Query 1501 GACTTGCGGCAATAAAGAAGTCGGTCACGGCAACAGAAGCAGCAAACGCCAGGAATCAGT 1560
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GACTTGCGGCTATAAAGAAGTCGGTCACGGCAACAGAAGCAGCAAACGCCAGGAATCAGT 1554
Query 1561 TTGGGCATGGGACTGCTAATGCAAGGGGCGGTCAGGCAAAGACGCCTTCTAATCCCTTGG 1620
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1555 TTGGGCATGGGACTGCTAATGCAAGAGGCGGTCAGGCAAAGACACCTTCTAATCCCATGG 1614
Query 1621 GCTCTACAACTTTCAATCACTGATGTATTAGATCAACCCTCCAATCGTGTTTTGTAGGAA 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1615 GCTCTACAACTTTCAATCACTGATGTATTAGATCAACCCTCCAATCGTGTTTGGTAGGAA 1674
Query 1681 TTTTCCATTACAAAGGTACGAA-TGTTGTAACACCCATTTTGTAC---A----G-TC-CA 1730
|||||||||| ||||||||||| | ||||| |||||||||||||| | | || ||
Sbjct 1675 TTTTCCATTAAAAAGGTACGAAAT-TTGTATCACCCATTTTGTACCCTATCTAGATCTCA 1733
Query 1731 -AG---A---TAACTACAAGCATGGAGGCTAGGCTAGATCTTAATTTTAACCATTAGTAA 1783
|| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CAGTCCAAGATAACTACAGGCATGGAGGCTAGGCTAGATCTTAATTTTAACCATTAGTAA 1793
Query 1784 AGTATCTTACCACCTTATGGGATTGAATTGATTCAATGTTTTGCAAAGCA-C-AAAGGTG 1841
||||||||||||||| ||||||||||||||||||||||||||||||| | | ||| |||
Sbjct 1794 AGTATCTTACCACCTCATGGGATTGAATTGATTCAATGTTTTGCAAAACGGCCAAAAGTG 1853
Query 1842 TATGAATTGAGAGATGAGACACAGTTATAAAGCGGTTACGAA-CCGGACTAGCTGGTATT 1900
||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1854 TATGAATTGAGTGATGAGACACAGTTATAAAGCGGTTACAAAACCGGACTAGCCGGTATA 1913
Query 1901 ATCCATTAAACAGATTCTTCTCATACAGTTGAATCTTCC 1939
|||||||||||||||||||||||||||||||||||||||
Sbjct 1914 ATCCATTAAACAGATTCTTCTCATACAGTTGAATCTTCC 1952
> AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:3102157-3104014 FORWARD LENGTH=1040
Length=1040
Score = 191 bits (103), Expect = 2e-47
Identities = 126/136 (93%), Gaps = 5/136 (4%)
Strand=Plus/Minus
Query 1808 GAATTGATTCAATGTTTTGC-AAA--GCACAAAGGTGTATGAATTGAGAGATGAGACACA 1864
|||||||||||||||||||| ||| || |||| |||||||||||||| |||||||||||
Sbjct 1040 GAATTGATTCAATGTTTTGCAAAACGGC-CAAAAGTGTATGAATTGAGTGATGAGACACA 982
Query 1865 GTTATAAAGCGGTTAC-GAACCGGACTAGCTGGTATTATCCATTAAACAGATTCTTCTCA 1923
|||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 981 GTTATAAAGCGGTTACAAAACCGGACTAGCCGGTATAATCCATTAAACAGATTCTTCTCA 922
Query 1924 TACAGTTGAATCTTCC 1939
||||||||||||||||
Sbjct 921 TACAGTTGAATCTTCC 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96033642585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5