BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478336
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10080.1 | Symbols: | RmlC-like cupins superfamily protein ... 1160 0.0
> AT3G10080.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:3107275-3108177 REVERSE LENGTH=903
Length=903
Score = 1160 bits (628), Expect = 0.0
Identities = 690/720 (96%), Gaps = 3/720 (0%)
Strand=Plus/Plus
Query 2 ACCTCAAGTAAAATGGAAGCAAACACTCTGTTTCTTCTAAAGGCTCTTTGTCTTCTCTGT 61
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 7 ACCTCAAGTAAAATGGAAGCAAACACTTTGTTTCTTCTAAAAGCTCTTTGTCTTCTTTGT 66
Query 62 TTTAGTGTATGCTTCACATTGGCTTCCGACCCTGATCCCATCCAAGACTTCTGTATACCA 121
|||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 67 TTTAATGTATGCTTCACATTAGCTTCCGACCCTGATCCCATCCAAGACTTCTGCATACCA 126
Query 122 AAACCTATGACATCTCCTTATCATGACCATCACTTCTCCACCAATCTCCCTTGCAAAAAC 181
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 127 AAACCTGTGACATCTCCTTACCATGACCATCACTTCTCCACCAATCTCCCTTGCAAAAAC 186
Query 182 TCCTCCGAAGTAACCACCGAAGATTTTGTCTTTTCCGGTCTAAAAACTGCCGGAAACTTC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCCTCCGAAGTAACCACCGAAGATTTTGTCTTTTCCGGTCTAAAAACTGCCGGAAACTTC 246
Query 242 ACGGAGACTGGGTTCGCCACCGTCCCAGTAAGCCCGGCAAACTTCCCGGGCCTTAACACA 301
|||||||| ||||||||||||||||||||| |||| | ||||||||| |||||||| |||
Sbjct 247 ACGGAGACGGGGTTCGCCACCGTCCCAGTAGGCCCAGAAAACTTCCCCGGCCTTAATACA 306
Query 302 TTAGGCCTGTCGTTTGTCCGGGCTGATCTCAAACCAGGATCCATAAACCCACCACATTAC 361
|||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 307 TTAGGCATCTCGTTTGTCCGGGCTGATCTCAAACCCGGATCCATTAACCCACCACATTAC 366
Query 362 CACCCGCGGGCCACGGAAGTAGCCCACTTGGTTAAAGGACGGGTTTACTCCGGTTTTGTG 421
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 367 CATCCGCGGGCGACGGAAGTAGCCCACTTGGTTAAAGGACGGGTTTACTCTGGTTTTGTG 426
Query 422 GACTCGAACAATAAGGTTTACGCTAAAGTGATGGAAGAAGGAGAAATGATGGTTTACCCA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GACTCGAACAATAAGGTTTACGCTAAAGTGATGGAAGAAGGAGAAATGATGGTTTACCCA 486
Query 482 AAAGGGCTAGTGCATTTTCAGATGAACGTCGGAGATGTTACGGCCACGATTGTCGGCGGA 541
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AAAGGGCTTGTACATTTTCAGATGAACGTCGGAGATGTTACGGCCACGATTGTCGGCGGA 546
Query 542 CTTAATAGCCAAAACCCTGGTATTCAGAAGATACCGTCGGTTGTTTTTGGATCAGGGATC 601
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 547 CTTAATAGCCAAAACCCTGGTATTCAGAAGATACCGTCCGTGGTTTTTGGGTCAGGGATC 606
Query 602 AATGAGGAGTTGCTTATGAAAGCTTTTGGGTTGAGTCTTAAGCAGATTGGTACGTTGAAG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AATGAGGAGTTGCTTATGAAAGCTTTTGGGTTGAGTCTTAAGCAGATTGGTACGTTGAAG 666
Query 662 AAAAGATTTGATCCTGTCATGTCGAATGAACATTGATGTTTTCTCTTAA-GTTCTTGATC 720
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||
Sbjct 667 AAAAGATTTGATCCTGTCATGTCTAATGAACATTGATGTTTTCTCTTAAAGT-CTT-ATC 724
Score = 217 bits (117), Expect = 2e-55
Identities = 135/143 (94%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 710 AGTTCTTGATCATAATGTTATTTTATATATTTTGACCCAAAAAATGGTCATCTTTAGTTA 769
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 762 AGTTCTTGATCATAATGTTA-TTTATATATTTTGACCCAAACAATGGTCATCTTTAGCTA 820
Query 770 GACAATGTTTCTTTCTAAC-TGAATTATTATCGCTTATCCACACTTCACATATATAATCC 828
|||||||||||||||| || |||||||||||| |||||||||||||||||| || |||||
Sbjct 821 GACAATGTTTCTTTCT-ACATGAATTATTATCACTTATCCACACTTCACATTTAGAATCC 879
Query 829 TGAATTATTATCACTAAACCTAC 851
|||||||||||||||||||||||
Sbjct 880 TGAATTATTATCACTAAACCTAC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5