BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478337

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   460    3e-129


> AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr3:3108810-3110026 REVERSE LENGTH=449
Length=449

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 286/304 (94%), Gaps = 2/304 (1%)
 Strand=Plus/Plus

Query  1    GCGTCTCTCGAATTAGGGTTCTAGTATCTCTGCTCTTTAAACTCTTATCGACGCTAAAAC  60
            |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct  15   GCGTCTCTCGAATTAGGGTTCTAGGATCTCTGCTCTTAAAACTCTTATCGCCGCTAAAAC  74

Query  61   TCTCTACCCATCGCAGAGCCTATCTACAGAATGGATTCTCAGATCAAACACGCCGTTGTA  120
            ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||
Sbjct  75   TCTCTACCCATCGCAGAGCCTCTCTAAAGAATGGATTCTCAGATCAAGCACGCTGTTGTA  134

Query  121  GTGAAAGTGATGGGTAGGACTGGGTCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTC  180
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  135  GTGAAAGTGATGGGAAGGACTGGATCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTC  194

Query  181  ACTGACTCGGACCGTTACATCATGAGGAACGTCAAAGGACCTGTTAGAGAGGGAGATATT  240
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  195  ACTGACTCGGACCGTTACATCATGAGGAACGTTAAAGGACCTGTCAGAGAGGGAGATATT  254

Query  241  CTCACCCTGCTCGAGTCTGAGAGAGAAGCTAGAAGACTGCGTTAATTCTTTCTTTGCAAA  300
            |||||| |||| ||||| |||||||||||||||||||| |||| |||||  |||||||||
Sbjct  255  CTCACCTTGCTGGAGTCCGAGAGAGAAGCTAGAAGACTTCGTTGATTCT--CTTTGCAAA  312

Query  301  TTGT  304
            ||||
Sbjct  313  TTGT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16688892668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5