BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478339

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10120.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   874    0.0  
  AT5G03890.1 | Symbols:  | unknown protein; INVOLVED IN: N-termi...   139    3e-32


> AT3G10120.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G03890.1); 
Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3130072-3130891 
FORWARD LENGTH=820
Length=820

 Score =  874 bits (473),  Expect = 0.0
 Identities = 566/608 (93%), Gaps = 18/608 (3%)
 Strand=Plus/Plus

Query  1    Caaaaaaatctctaaacacatctacaaaagaaggaatcacaaactaaa-ttaag-aaaaa  58
            ||||||||||||||||||||| |||   ||||| || ||||||||||| || || |||||
Sbjct  7    CAAAAAAATCTCTAAACACATATAC---AGAAGAAAGCACAAACTAAAGTT-AGAAAAAA  62

Query  59   acaaac--a-taagaaaaagTATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAG  115
            ||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   ACAAACAAACAAACAAAAAGTATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAG  122

Query  116  ATAATGAGAAATGATGGGAAAGTAGTTGAATACAGAGGACCCT-TGAAGGTTCATCACAT  174
            ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  123  ATAATGAGAAATGATGGGAAAGTAGTTGAATACAGAGGACC-TATGAAGGTTCATCACAT  181

Query  175  CCTCACCCAATtctctcctcactactctctctttgactctctctcCAACAATTGTCATCT  234
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  182  CCTCACCCAATTCTCTCCTCACTACTCTCTCTTTGACTCTCTCACCAACAATTGTCATCT  241

Query  235  TCATCCCCAAGCCAAGCTTCTCTGTGGGCGTCTCTACTATCTCTTGCCCCAGGAGACGA-  293
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | 
Sbjct  242  TCATCCCCAAGCCAAGCTTCTCTGTGGCCGTCTCTACTATCTATTGCCCCAGGAGACTAA  301

Query  294  CTAAAATCAAGCACGTgaagaagacgatgaagaaagtcaggtttgcaaatccagaggtgg  353
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  CTCAA-TCAAGCACATGAAGAAGACGATGAAGAAAGTCAGGTTTGCAAATCCAGAGGTGG  360

Query  354  aaaaagaagaa---gaagaagaTAGATTAACAGATTGTTGTGACAACACCAAGGAGAAGT  410
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  361  AAAAAGAAGAACAAGAAGAAGATAGATTAACAGATTGTTGTGACAACACCAAGGAGAAGA  420

Query  411  CTAATGGTGTTGTGAGGGTGAAGATGGTTGTGAGTAAGCAAGAGCTTGAAAAGCTGCTTC  470
            |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct  421  CTAATGGTGTTGTGAGAGTGAAGATGGTTGTGAGTAAGCAAGAGCTGGAGAAGCTGCTTC  480

Query  471  AAGGAGGTTCTGTCCATGAGATGGTTTATAGGACTCTTGCTAAGCAACATATATGTGCTG  530
            ||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| ||
Sbjct  481  AAGGAGGTTCTGTTCATGAAATGGTTTATAGGACTCTTGCTAAGCAACATCTGTGTGATG  540

Query  531  ATGATGATGA-TGATCATCATCAAGTCTGGAGACCTTTGTTAGATAGCATTCCTGAAACT  589
            |||||||||| || |||| |  ||| ||||||||||||||||||||||||||||||||||
Sbjct  541  ATGATGATGAGTG-TCATAAAGAAGGCTGGAGACCTTTGTTAGATAGCATTCCTGAAACT  599

Query  590  GATTAGCC  597
            ||||||||
Sbjct  600  GATTAGCC  607


> AT5G03890.1 | Symbols:  | unknown protein; INVOLVED IN: N-terminal 
protein myristoylation; LOCATED IN: cellular_component 
unknown; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT3G10120.1); Has 1807 Blast hits to 1807 proteins 
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; 
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes 
- 339 (source: NCBI BLink). | chr5:1047150-1047689 FORWARD 
LENGTH=540
Length=540

 Score =  139 bits (75),  Expect = 3e-32
 Identities = 114/132 (86%), Gaps = 5/132 (4%)
 Strand=Plus/Plus

Query  77   ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAATGAGAAATGATGGGAAA  136
            |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || 
Sbjct  1    ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAGATGATGGTAAG  60

Query  137  GTAGTTGAATACAGAGGACCC-TTGAAG-GTTCATCACATCCTCACCCAATtctctcctc  194
            ||| ||||||| |||| |||  || | | |||||||||||||| || |||||||||  ||
Sbjct  61   GTACTTGAATATAGAGAACCAATT-A-GTGTTCATCACATCCTTACTCAATTCTCTGGTC  118

Query  195  actac-tctctc  205
            ||| | ||||||
Sbjct  119  ACTCCATCTCTC  130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29688380877


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5