BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478341
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10150.1 | Symbols: ATPAP16, PAP16 | purple acid phosphatase... 1838 0.0
> AT3G10150.1 | Symbols: ATPAP16, PAP16 | purple acid phosphatase
16 | chr3:3137362-3139056 REVERSE LENGTH=1244
Length=1244
Score = 1838 bits (995), Expect = 0.0
Identities = 1154/1229 (94%), Gaps = 18/1229 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAAACCGTCGTTGTTTCTGATCA-T-TT-TAGTGCTAAGCATA-C--CG---AC- 50
|||||||||||||||||||||| ||||| | || |||||||||||||| | || ||
Sbjct 1 ATGAAAAAACCGTCGTTGTTTCAGATCATTATTATAGTGCTAAGCATACCAACGACTACG 60
Query 51 -----GACGGTGGGCAATCTTCGGGTGCGGGAAGGATCACCGTTCAAGATCGCCATCTTT 105
||||||||| |||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 61 GGGAGGACGGTGGGAAATCTTCGGGTGCGGGAAGGATCACCTTTCAAGATCGCAATATTT 120
Query 106 GCAGACCTCCACTTCGGTGAAGACACGTGGACTGATTGGGGTCCTCGTCAAGATGTGAAC 165
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 121 GCAGACCTCCACTTCGGTGAAGACACGTGGACTGATTGGGGTCCTGGTCAGGATGTGAAC 180
Query 166 TCCGTTAACGTTATGTCCGCCGTTCTCCACGCTGAAACTCCAGATTTTGTGGTCTACTTG 225
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 181 TCCGTTAACGTTATGTCCGCCGTTCTCGACGCTGAAACTCCAGATTTTGTGGTCTATTTG 240
Query 226 GGAGATGTAGTAACAGCTAACAACATAGCAATCCAAAACGCAAGCTTGTTTTGGGACAAA 285
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGATGTTGTGACGGCTAACAACATAGCAATCCAAAACGCAAGCTTGTTTTGGGACAAA 300
Query 286 GCAATCTCTCCTACAAGAGACAGAGGCATTCCATGGGCTACTCTCTTTGGTAACCACGAC 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCAATCTCTCCTACAAGAGACAGAGGCATTCCATGGGCTACTCTCTTTGGTAACCATGAC 360
Query 346 GATGCTTCTTTTCTTTGGCCTTTGGATTGGTTCTCTTCCTCCGGTATTCCTCCCGTTCGC 405
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 361 GATGCTTCTTTTGTTTGGCCTTTGGATTGGTTGTCTTCCTCCGGTATTCCTCCCCTTCGT 420
Query 406 TGCCCTGCTGCATCGGATGATAATGGATGCGCGTTTAGAGGAACTACGCGAGTGGAATTG 465
|||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||| ||
Sbjct 421 TGCCCTGCAGCATCAGATGATGATGGATGCACGTTCAGAGGAACTACGCGAGTGGAACTG 480
Query 466 ATTCAAGAAGAGATAAAGTCATCCAGTGCACTCTCATACTCTATGATTGGTCCGAAGGAG 525
||||| ||||| ||||||||||||| ||||||||||||||| |||||| |||| ||||||
Sbjct 481 ATTCAGGAAGAAATAAAGTCATCCAATGCACTCTCATACTCCATGATTAGTCCTAAGGAG 540
Query 526 CTATGGCCAAGCGTATCTAACTATTTCCTTCTTGTGGAATCATCGGATCATTCAAAATCA 585
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 541 CTATGGCCAAGCGTATCTAACTATGTCCTTCTTGTGGAATCATCGGATCATTCGAAACCA 600
Query 586 CCTGTGGCAATACTATACTTTCTTGATTCGGGCGGTGGTTCATACCCGGAGGTTATCTCA 645
|| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGTGGCATTGCTATATTTTCTTGATTCGGGCGGTGGTTCATACCCGGAGGTTATCTCA 660
Query 646 AATGCTCAAGTGGAATGGTTTAAAACCATGTCTAATACTCTTAAT-CCTGATTTAAGGAT 704
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 661 AATGCTCAAGTGGAATGGTTTAAAACCAAGTCTAATACTCTTAATCCCT-ATTTAAGGAT 719
Query 705 CCCAGAGTTGATATTTTGGCACATACCTAGTAAAGCATACAAGAAAGTAGCCCCAAGGCT 764
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 720 CCCGGAGTTGATATTTTGGCACATACCTAGTAAAGCATACAAGAAAGTAGCTCCAAGGTT 779
Query 765 ATGGATAACAAAACCTTGCGTCGGATCAATCAACAAAGAGAAAGTTGCTGCTCAAGAAGC 824
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 780 ATGGATAACAAAACCTTGCGTTGGATCAATCAACAAAGAGAAAGTTGTTGCTCAAGAAGC 839
Query 825 TGAAAATGGGATGATGAGAGTTCTTGAGAACAGATCCTCCGTTAAGGCAGTGTTTGTAGG 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAAAATGGGATGATGAGAGTTCTTGAGAACAGATCCTCCGTTAAGGCAGTGTTTGTAGG 899
Query 885 ACACAACCATGGACTAGACTGGTGCTGTCCGTACAAAGATAAACTCTGGCTTTGCTTTGC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACACAACCATGGACTAGACTGGTGCTGTCCGTACAAAGATAAACTCTGGCTTTGCTTTGC 959
Query 945 GAGACACACAGGTTATGGTGGATATGGAAATTGGCCAAGAGGATCAAGGATTTTGGAGAT 1004
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GAGACACACAGGTTATGGTGGATATGGAAATTGGCCAAGGGGATCAAGGATTTTGGAGAT 1019
Query 1005 TTCTGAAATGCCCTTTCTTATTAAGACCTGGATTAGGATGGAAGATGGATCTGTCCACAG 1064
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCTGAAATGCCCTTTCGTATTAAGACCTGGATTAGGATGGAAGATGGATCTGTCCACAG 1079
Query 1065 TGAAGTTAATCTAACATATGATTAGTCTATTCATTACATATGTCAAACTTTGTAGAAGTG 1124
||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1080 TGAAGTTAACCTAACATATGATTAGTCTATTTATCACATATGTCAAACTTTGTAGAAGTA 1139
Query 1125 ATATTGCCTAGTAATTGTTGGTAGGTTTGGTCATTGTAGACTTGTTAAGTGACTAGAAAA 1184
||| |||||| || ||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1140 ATAGTGCCTA-TAGTTGTTGGTAGGTTTGGTCACTGTAAACTTGTTAAGTGACAAGAAAA 1198
Query 1185 ACTGATTTTAATAAGCCAATATATGAACT 1213
|||| ||| ||||||||||| |||||||
Sbjct 1199 ACTGCTTTCCATAAGCCAATAAATGAACT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59588046915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5