BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478348
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10230.1 | Symbols: LYC | lycopene cyclase | chr3:3164075-31... 3046 0.0
AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:316... 222 9e-57
> AT3G10230.1 | Symbols: LYC | lycopene cyclase | chr3:3164075-3166038
REVERSE LENGTH=1964
Length=1964
Score = 3046 bits (1649), Expect = 0.0
Identities = 1866/1969 (95%), Gaps = 21/1969 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTTCTGCTTCTGGGTAA 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CTCTCTTTCTGGGAAGAAGATAATTGTCTCCATCTCCATGAAGCTACTGCTTCTGGGTAA 60
Query 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAG------AG-ATTTCATATTCGCAATCCCT 113
||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||||
Sbjct 61 GTTTTGTGGTCTTCGTTCATCTTTTCTCTAGCAATTTAGTATTCCATTTTCTCAATCCCT 120
Query 114 CTGGTTAGAAATCGTGTCTGGTGATTTTTGAATTATATCCTTTT-G-G------T-GATT 164
|||||||||||||||||| ||||||||||||||||||||||||| | | | ||||
Sbjct 121 CTGGTTAGAAATCGTGTCCGGTGATTTTTGAATTATATCCTTTTGGTGTTTTCTTCGATT 180
Query 165 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGGGGAATTCGATGGATACTCTGTTGAAAACACCCAACAAGCTCGATTTTTTCATCCC 240
Query 225 TCAGTTTCATGGGTTTGAGAGATTAAGCAGTAATAATCCAAACCCTGCAAGGGTTAGGCT 284
||||||||||||||||||||||||| ||||||| |||||| ||| | |||||||||||||
Sbjct 241 TCAGTTTCATGGGTTTGAGAGATTATGCAGTAACAATCCATACCATTCAAGGGTTAGGCT 300
Query 285 TGGTCTGAAGAAAAGGGCTATCAAAATTGGCTCTAGTGTTGCCAGTGGTAGTGCTGCTCT 344
|||| |||||||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 301 TGGTGTGAAGAAAAGGGCTATCAAAATTGTCTCTAGTGTAGTGAGTGGTAGCGCTGCTCT 360
Query 345 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTCGAGCTTCCTTTGTACGA 404
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TTTGGATCTTGTTCCTGAAACTAAGAAGGAGAATCTTGACTTTGAGCTTCCTTTGTACGA 420
Query 405 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACTTCCAAGAGTCAAGTTGTTGATTTGGCTATTGTTGGTGGTGGTCCTGCTGGTTTAGC 480
Query 465 TGTGGCTCAGCAGGTTTCTGAGGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCAAA 524
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CGTGGCTCAGCAGGTTTCTGAAGCTGGACTCTCTGTTTGTTCCATTGATCCTTCTCCTAA 540
Query 525 GCTCATATGGCCTAACAACTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 584
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCATATGGCCTAACAATTATGGAGTTTGGGTTGATGAGTTTGAGGCTATGGATTTACT 600
Query 585 AGATTGCTTAGACACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 644
||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGACTGCCTGGATACCACATGGTCTGGTGCTGTTGTCTATGTCGATGAAGGTGTCAAGAA 660
Query 645 GGATTTAAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 704
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATTTGAGCCGGCCTTATGGGAGAGTTAACCGGAAACAGCTCAAATCCAAAATGCTTCA 720
Query 705 GAAATGTATTACCAACGGTGTTAAGTTTCATCAGTCTAAGGTCACTAACGTGGTTCACGA 764
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 721 GAAATGTATTACCAACGGTGTTAAATTTCATCAGTCTAAGGTCACTAATGTGGTTCACGA 780
Query 765 GGAGGCAAACTCCACTGTGGTTTGCAGCGACGGTGTGAAGATTCAGGCTTCGGTGGTTCT 824
||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 781 GGAGGCAAACTCCACTGTGGTCTGCAGTGACGGTGTAAAGATTCAGGCTTCCGTGGTTCT 840
Query 825 TGATGCCACCGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCGTACAACCCTGGGTA 884
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 TGATGCCACTGGGTTTTCCCGATGCTTGGTTCAGTATGACAAACCTTACAACCCTGGGTA 900
Query 885 CCAAGTAGCTTACGGGATTATAGCTGAAGTCGATGGTCACCCTTTCGATGTAGACAAAAT 944
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 901 CCAAGTAGCTTACGGGATTGTAGCTGAAGTTGATGGTCACCCATTCGATGTAGACAAAAT 960
Query 945 GGTGTTCATGGATTGGAGAGACAGACATCTGGACTCATATCCTGAGCTTAAAGAACGGAA 1004
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 961 GGTGTTCATGGATTGGAGAGACAAACATCTGGACTCATATCCTGAGCTGAAAGAACGGAA 1020
Query 1005 CAGCAAGATCCCAACATTCTTGTACGCGATGCCGTTTTCTTCCAACCGAATATTTCTTGA 1064
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1021 CAGCAAGATCCCAACGTTCTTGTACGCTATGCCATTTTCTTCCAACCGAATATTTCTTGA 1080
Query 1065 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGCGTATGGACGATATCCAAGAAAGAATGGC 1124
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1081 AGAAACTTCTTTAGTTGCTAGACCTGGTCTGAGAATGGAAGATATCCAAGAAAGAATGGC 1140
Query 1125 TGCTAGACTGAAACATTTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGCTAGACTGAAACATCTGGGGATCAATGTGAAGAGGATTGAGGAAGACGAGCGTTGTGT 1200
Query 1185 GATCCCAATGGGCGGTCCTTTACCAGTCTTACCTCAACGAGTTGTCGGGATTGGTGGGAC 1244
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1201 GATCCCGATGGGCGGTCCTTTACCAGTCTTACCTCAACGGGTTGTGGGGATTGGTGGGAC 1260
Query 1245 AGCGGGAATGGTTCATCCCTCAACTGGTTACATGGTAGCTAGGACTCTTGCAGCTGCGCC 1304
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1261 AGCAGGAATGGTTCATCCTTCAACTGGTTACATGGTTGCTAGGACTCTTGCAGCTGCACC 1320
Query 1305 AATAGTTGCAAACGCCATTGTGAGATACCTCGGTTCACCGAGTAGTAACAGCCTAAGAGG 1364
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1321 AATAGTTGCAAATGCCATTGTGAGATACCTCGGTTCACCAAGTAGTAATAGCCTGAGAGG 1380
Query 1365 AGATCAACTCTCTGCTGAGGTATGGAGAGACTTGTGGCCTATTGAACGGCGCAGACAGAG 1424
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1381 AGATCAACTCTCTGCTGAGGTTTGGAGAGACTTGTGGCCTATCGAACGGCGTAGACAGAG 1440
Query 1425 GGAATTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCAACTTAGACGCTACTAGAAG 1484
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1441 GGAGTTCTTCTGTTTTGGAATGGATATTCTGCTGAAACTCGATTTAGACGCTACTAGAAG 1500
Query 1485 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTTCTTTGATGCATTCTTTGATCTGCAACCTCATTACTGGCACGGATTCTTGTCTTCCAG 1560
Query 1545 GCTGTTTCTCCCGGAACTGTTGTTCTTTGGGTTGTCGCTCTTCTCGCATGCTTCTAATAC 1604
|||||||||||||||||||||| |||| ||||||||||||||||| || ||||| |||||
Sbjct 1561 GCTGTTTCTCCCGGAACTGTTGGTCTTCGGGTTGTCGCTCTTCTCACACGCTTCCAATAC 1620
Query 1605 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTCAAGATTGGAGATCATGACAAAGGGGACTGTTCCTCTTGCTAAGATGATCAACAATTT 1680
Query 1665 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGTACAAGATAGAGACTAAGGACCAGAAACTTAGACATATAAGTACATCTGTTCTTTGGT 1740
Query 1725 TCTTGACCCAGTGGTATATCCGCATTGCAAGTCGTCGCATAATTGTGTATAAACCGCAGA 1784
|||||||| ||| |||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 1741 TCTTGACC-AGTAGTATATCCGCATTGCAAGTCGTTGGATAATTGTGTATAAACCACAGA 1799
Query 1785 TCATAACCTGAATCCTTGTGAAATCAAAGTGTTACTAGTTATTCTTCATTAAAATTAATA 1844
|||||||||||||||||||||||||||| |||||||| | | | | ||||||||||||||
Sbjct 1800 TCATAACCTGAATCCTTGTGAAATCAAATTGTTACTACT-AGT-T-CATTAAAATTAATA 1856
Query 1845 TTTTGTGCTGCATCGTGTTTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1904
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CTTTGTGCTGCATTGTGTTT-CACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTA 1915
Query 1905 ATAAGATAAAAGAATTGATGTTGAACACAAAAGCAACTCTTTCAAACTC 1953
||||||||||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 1916 ATAAGATAAAAGAGTGGATTTTGAACACAAAAGCAAATCTTTCAAACTC 1964
> AT3G10220.1 | Symbols: | tubulin folding cofactor B | chr3:3161757-3164231
FORWARD LENGTH=1058
Length=1058
Score = 222 bits (120), Expect = 9e-57
Identities = 148/161 (92%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 1793 TGAATCCTTGTGAAATCAAAGTGTTACTAGTTATTCTTCATTAAAATTAATATTTTGTGC 1852
|||||||||||||||||||| |||||||| || |||||||||||||||| |||||||
Sbjct 1058 TGAATCCTTGTGAAATCAAATTGTTACTA-CTA--GTTCATTAAAATTAATACTTTGTGC 1002
Query 1853 TGCATCGTGTTTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTAATAAGATA 1912
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGCATTGTG-TTTCACCAACTCTTGTAAATCCAAAACTAGAGGCAAAATGTAATAAGATA 943
Query 1913 AAAGAATTGATGTTGAACACAAAAGCAACTCTTTCAAACTC 1953
||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 942 AAAGAGTGGATTTTGAACACAAAAGCAAATCTTTCAAACTC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96736450215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5